Workflow Entry: Split multi-sequence FASTA file into list

Created at: 16/03/10 @ 17:46:06

Version 1 (of 1)

Version created on: 16/03/10 @ 17:46:06 by: White duncan100 | Revision comments Expand

Title: Split multi-sequence FASTA file into list

Type: Taverna 2

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Splits a flat file containing multiple fasta sequences into a list of fasta sequences.

Option 1:

Authors (0)

Titles (0)

Descriptions (0)

Inputs (1)

Name	Description
flat_fastas

Processors (6)

Name	Type	Description
Split_string_into_string_list_by_regular_expression	localworker
greater_than_symbol	stringconstant
non_empty_fasta	stringconstant
Concatenate_two_strings	localworker
Filter_List_of_Strings_by_regex	localworker
String_List_Difference	localworker

Beanshells (0)

Outputs (1)

Name	Description
list_of_fastas

Datalinks (9)

Source	Sink
greater_than_symbol:value	Split_string_into_string_list_by_regular_expression:regex
flat_fastas	Split_string_into_string_list_by_regular_expression:string
greater_than_symbol:value	Concatenate_two_strings:string1
Split_string_into_string_list_by_regular_expression:split	Concatenate_two_strings:string2
Concatenate_two_strings:output	Filter_List_of_Strings_by_regex:stringlist
non_empty_fasta:value	Filter_List_of_Strings_by_regex:regex
Filter_List_of_Strings_by_regex:filteredlist	String_List_Difference:list1
Concatenate_two_strings:output	String_List_Difference:list2
String_List_Difference:difference	list_of_fastas