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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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1000
5000
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecarry_on_if_similar_enoughsourceIn0targetIn0carry_on0targetOut00sourceOut00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
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carry_on
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0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow36similarity_thresholdWorkflow36Sequence2Workflow36Sequence1carry_on_if_similar_enoughsourceIncarry_on_if_similar_enoughtargetIncarry_on_if_similar_enoughcarry_onpathogen_proteins_pathnon_pathogen_proteins_pathWorkflow36Sequence100Sequence200similarity_threshold00continuerunMGCATcommand0workingdir0args0net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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l('text/plain')
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UserNameHere
2010-03-16 16:21:54.265 GMT
UserNameHere
2010-03-16 20:34:16.471 GMT
UserNameHere
2010-03-16 21:02:05.625 GMT
UserNameHere
2010-03-16 20:45:44.987 GMT
UserNameHere
2010-03-16 16:20:34.383 GMT
UserNameHere
2010-03-16 20:27:21.661 GMT
UserNameHere
2010-03-16 20:44:41.769 GMT
UserNameHere
2010-03-16 20:38:23.832 GMT
UserNameHere
2010-03-16 20:49:11.432 GMT
UserNameHere
2010-03-16 20:47:19.965 GMT
UserNameHere
2010-03-16 16:19:21.614 GMT
UserNameHere
2010-03-16 20:42:11.268 GMT
UserNameHere
2010-03-16 20:46:31.676 GMT
UserNameHere
2010-03-16 20:29:02.574 GMT
UserNameHere
2010-03-16 20:42:41.149 GMT
UserNameHere
2010-03-16 16:24:57.923 GMT
UserNameHere
2010-03-16 20:41:02.274 GMT
UserNameHere
2010-03-16 20:33:31.554 GMT
UserNameHere
2010-03-16 16:21:13.44 GMT
UserNameHere
2010-03-16 20:40:07.800 GMT
UserNameHere
2010-03-16 16:23:31.917 GMT
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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1000
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0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorking_Dirvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
D:\blastdb\
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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1000
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0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_Text_Filefileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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fileurl
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filecontents
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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regex
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split
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l('text/plain')
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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\n
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1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_List_of_Strings_by_regexstringlist1regex10regex20file20group0file0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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UserNameHere
2010-03-16 21:29:56.300 GMT
UserNameHere
2010-03-16 21:38:29.187 GMT
UserNameHere
2010-03-16 21:29:13.59 GMT
UserNameHere
2010-03-16 19:58:36.225 GMT
UserNameHere
2010-03-16 21:37:27.450 GMT
UserNameHere
2010-03-16 21:35:15.777 GMT
UserNameHere
2010-03-16 19:56:51.562 GMT
UserNameHere
2010-03-16 20:06:18.820 GMT
UserNameHere
2010-03-16 21:26:18.741 GMT
UserNameHere
2010-03-16 17:08:09.856 GMT
UserNameHere
2010-03-16 20:20:57.123 GMT
UserNameHere
2010-03-16 20:00:15.477 GMT
UserNameHere
2010-03-16 19:57:29.691 GMT
UserNameHere
2010-03-16 20:06:50.350 GMT
UserNameHere
2010-03-16 21:28:23.481 GMT
UserNameHere
2010-03-16 21:06:42.478 GMT
UserNameHere
2010-03-16 19:59:13.375 GMT
UserNameHere
2010-03-16 17:19:56.20 GMT
UserNameHere
2010-03-16 21:27:44.184 GMT
UserNameHere
2010-03-16 21:10:59.598 GMT
UserNameHere
2010-03-16 21:18:09.286 GMT
UserNameHere
2010-03-16 20:01:11.947 GMT
UserNameHere
2010-03-16 19:53:25.572 GMT
UserNameHere
2010-03-16 17:31:11.731 GMT
UserNameHere
2010-03-16 21:20:26.475 GMT
UserNameHere
2010-03-16 17:07:30.131 GMT
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRegex2value00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
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1000
5000
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_stringsstringlist1output00net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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stringlist
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'text/plain'
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0
UserNameHere
2010-03-16 20:12:12.586 GMT
UserNameHere
2010-03-16 20:13:24.460 GMT
UserNameHere
2010-03-16 20:16:21.695 GMT
UserNameHere
2010-03-16 20:14:42.471 GMT
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGroupvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
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1000
5000
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_Text_File_2fileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
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java.lang.String
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UserNameHere
2010-03-16 22:18:02.467 GMT
UserNameHere
2010-03-16 22:29:02.510 GMT
UserNameHere
2010-03-16 22:25:43.329 GMT
UserNameHere
2010-03-16 22:27:39.980 GMT
UserNameHere
2010-03-16 22:26:37.122 GMT
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expression_2string0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
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0
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split
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l('text/plain')
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1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1group0regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity1.0net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.RegularExpressionStringList
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l('text/plain')
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regex
0
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0
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UserNameHere
2010-03-16 22:45:13.563 GMT
UserNameHere
2010-03-16 22:45:05.540 GMT
UserNameHere
2010-03-16 22:45:51.185 GMT
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
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net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGroup1value00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
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1.0
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5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex2value00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
Total.coverage.among.all.sequences.(.*)\%
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeThresholderseqSim0reqSim0cont00net.sf.taverna.t2.activitiesbeanshell-activity1.0net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
seqSim
0
text/plain
java.lang.String
true
reqSim
0
text/plain
0
cont
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeINI_Pathvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.0net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
D:\mgcat_v15b\mgcat.ini
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.0net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerunMGCATcommandrunMGCATworkingdirrunMGCATargsRead_Text_FilefileurlSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexFilter_List_of_Strings_by_regexstringlistFilter_List_of_Strings_by_regexregex1Filter_List_of_Strings_by_regexregex2Filter_List_of_Strings_by_regexfile2Filter_List_of_Strings_by_regexgroupFilter_List_of_Strings_by_regexfileWrite_Text_FilefilecontentsWrite_Text_FileoutputFileConcatenate_stringsstringlistRead_Text_File_2fileurlSplit_string_into_string_list_by_regular_expression_2stringSplit_string_into_string_list_by_regular_expression_2regexFilter_list_of_strings_extracting_match_to_a_regexstringlistFilter_list_of_strings_extracting_match_to_a_regexgroupFilter_list_of_strings_extracting_match_to_a_regexregexThresholderseqSimThresholderreqSimcontinue