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KEGG pathways common to both QTL and microarray based investigations

Workflow Entry: KEGG pathways common to both QTL and microarray based investigations

Created at: 03/10/07 @ 18:35:58 Last updated: 13/11/07 @ 16:22:14

Version 2 (latest) (of 2)

Version created on: 03/10/07 @ 18:35:58 by: Paul Fisher | Revision comments Expand

Last edited on: 13/11/07 @ 16:22:14 by: Paul Fisher

Title: KEGG pathways common to both QTL and microarray based investigations

Type: Taverna 1

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Kegg_pathways_common_to_both_qtl_and_microarray_based_investigations_27627

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Description

This workflow takes in two lists of KEGG pathway ids. These are designed to come from pathways found from genes in a QTL (Quantitative Trait Loci) region, and from pathways found from genes differentially expressed in a microarray study. By identifying the intersecting pathways from both studies, a more informative picture is obtained of the candidate processes involved in the expression of a phenotype

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Workflow Components

Inputs (2)

Name	Description
qtl_pathways
microarray_pathways

Processors (2)

Name	Type	Description
kegg_pathways	arbitrarywsdl
common_pathways	soaplabwsdl	Two lists of KEGG pathways are compared and common pathways extracted - for use with QTL and microarray derived pathways

Outputs (1)

Name	Description
intersecting_pathways

Links (4)

Sink	Source
common_pathways:microarray_pathways_direct_data	microarray_pathways
common_pathways:qtl_pathways_direct_data	qtl_pathways
kegg_pathways:string	common_pathways:output
intersecting_pathways	kegg_pathways:return

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Taverna 1 workflow

Information Original Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under the Creative Commons Attribution-NoDerivs 3.0 License.

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Information Favourited By (1)

Jan Aerts

Statistics

887 viewings

730 downloads

Citations (1)

1. Fisher P, Hedeler C, Wolstencroft K, Hulme H, Noyes H, Kemp S, Stevens R, Brass A, A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis., Nucleic Acids Research, 20 August 2007, http://nar.oxfordjournals.org/cgi/content/full/35/16/5625

Version History

Earliest Version:
[1] - KEGG pathways common to both QTL and microarray based investigations

Created on: Wednesday 03 October 2007 @ 18:35:58 (BST)

Created by: Paul Fisher

Revision comments:

None

Latest Version:
[2] - KEGG pathways common to both QTL and microarray based investigations

Created on: Wednesday 03 October 2007 @ 18:35:58 (BST)

Created by: Paul Fisher

Last edited on: Tuesday 13 November 2007 @ 16:22:14 (GMT)

Last edited by: Paul Fisher

Revision comments: