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Workflow Entry: Fetch PDB flatfile from RCSB server
| Citations (0) | Version History | Reviews (1) | Comments (2) |
 Version 1
(of 1)
|
Version created on:
25/01/08 @ 11:52:38
by:
Katy Wolstencroft
|
Revision comments 
Last edited on: 05/03/08 @ 16:11:13 by: Katy Wolstencroft
Title: Fetch PDB flatfile from RCSB server
Type: Taverna 1
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Description
Given aPDB identifier such as ‘1crn’, this workflow fetches the PDB format flatfile from the RCSB
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Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/133/download?version=1
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Workflow Components
All versions of this Workflow are licensed under the Creative Commons Attribution-Share Alike 3.0 License.
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406 viewings
305 downloads
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Earliest Version:
[1] - Fetch PDB flatfile from RCSB server
This Workflow only has one version.
Reviews
(1)
ViewCopyright (c) 2007 - 2008 The University of Manchester and University of Southampton
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It would be good to have some sort of md5 check - because when you use batch downloads, sometimes you can have network problems and not be aware of it.
Also, you can save the date of the download and the version of pdb database, to make the experiment easier to reproduce.
Also, it could give an error message when the pdb protein doesnt' exists (e.g. un-existing ids, keywords, etc..)