About | Mailing List | Publications

Give us Feedback |

Invite

Home
»
Workflows
»
ExampleWorkflow1

Workflow Entry: ExampleWorkflow1

Created at: 04/02/08 @ 14:19:24 Last updated: 04/02/08 @ 15:52:46

Version 2 (latest) (of 2)

Version created on: 04/02/08 @ 14:19:24 by: Andy Turner | Revision comments Expand

Last edited on: 04/02/08 @ 15:52:46 by: Andy Turner

Title: ExampleWorkflow1

Type: Taverna 1

Preview

(Click on the image to get the full size)

Download Scalable Diagram (SVG)

Description

This workflow was created based on the Leeds Taverna Workshop 2008-02-04 material developed by Katy.

Download

Download Workflow File/Package (SCUFL)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/138/download?version=2
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
geneIdentifier

Processors (6)

Name	Type	Description
Get_Protein_FASTA	local
searchSimple	arbitrarywsdl	Execute Blast See the Service entry for this web service.
database	stringconstant
program	stringconstant
pscan	soaplabwsdl	Scans proteins using PRINTS
patmatmotifs	soaplabwsdl	Search a PROSITE motif database with a protein sequence

Beanshells (0)

Outputs (4)

Name	Description
fastaSequence
blast_report
pscanout
patmatmotifsout

Links (10)

Source	Sink
geneIdentifier	Get_Protein_FASTA:id
Get_Protein_FASTA:outputText	patmatmotifs:sequence_direct_data
Get_Protein_FASTA:outputText	pscan:sequence_direct_data
Get_Protein_FASTA:outputText	searchSimple:query
database:value	searchSimple:database
patmatmotifs:outfile	patmatmotifsout
program:value	searchSimple:program
Get_Protein_FASTA:outputText	fastaSequence
pscan:outfile	pscanout
searchSimple:Result	blast_report

Coordinations (0)

Information Workflow Type

Taverna 1

Information Original Uploader

Andy Turner

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Katy Wolstencroft

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Original Uploader tags

test

Log in to add Tags

Information Shared with Groups (1)

Tutorial

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Ratings (0)

Current:

0.0 / 5

(0 ratings)

Log in to rate and see breakdown of ratings

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

809 viewings

985 downloads

[ see breakdown ]

Citations (0)

None

Version History

Earliest Version:
[1] - ExampleWorkflow1

Created on: Monday 04 February 2008 @ 14:19:24 (GMT)

Created by: Andy Turner

Last edited on: Monday 04 February 2008 @ 14:22:01 (GMT)

Last edited by: Andy Turner

Revision comments:

None

Latest Version:
[2] - ExampleWorkflow1

Created on: Monday 04 February 2008 @ 14:19:24 (GMT)

Created by: Andy Turner

Last edited on: Monday 04 February 2008 @ 15:52:46 (GMT)

Last edited by: Andy Turner

Revision comments:

This now works correctly I think... The tutorial is the basic one as per the workshop in Leeds on 2008-02-04 run by Katy.

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (50)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Original Uploader

Lebreton

retrieve protein sequence and do a high speed BLAST from DDBJ Web services (v1)

Created: 01/09/10 @ 17:16:24 | Last updated: 01/09/10 @ 17:18:45

Credits: Lebreton

Attributions: retrieve protein sequence and do a high speed BLAST and extract position from DDBJ Web services

License: Creative Commons Attribution-Share Alike 3.0 Unported License

retrieve protein sequence and do a high speed BLAST from DDBJ Web services informations on Web services available at http://xml.nig.ac.jp/index.html example accession : Q9NRA8 database : ddbjbct program : tblastn param : -b 100 -v 100

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 19 times | Downloaded: 13 times

Tags (6):