filesimilarityentrezurlsdf00
OpenBabel07141012222D
2 1 0 0 0 0 0 0 0 0999 V2000
0.0000 0.0000 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0
0.0000 0.0000 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0
1 2 1 0 0 0 0
M END
$$$$
2010-07-14 12:26:28.278 BST
A chemical compound in SDF format
2010-07-14 12:26:39.510 BST
threshold00
Parameter to define cut off for similarity
2010-07-14 13:04:26.565 BST
95
2010-07-14 13:04:02.302 BST
format00
Format of input chemical structure
2010-07-14 13:05:01.603 BST
eFormat_SDF
2010-07-14 13:04:50.170 BST
URL
text/plain
2010-05-27 15:32:58.234 BST
SuccesscheckStatusKeyIn0status00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop
<activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.2</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns="">
<script>loop = "" + status.equals("eStatus_Running");
if ("true".matches(loop)) {
Thread.sleep(10000);
}</script>
<dependencies />
<classLoaderSharing>workflow</classLoaderSharing>
<localDependencies />
<artifactDependencies />
<inputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
<translatedElementType>java.lang.String</translatedElementType>
<allowsLiteralValues>true</allowsLiteralValues>
<name>status</name>
<depth>0</depth>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean>
</inputs>
<outputs>
<net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
<granularDepth>0</granularDepth>
<name>loop</name>
<depth>0</depth>
</net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean>
</outputs>
</net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity>
true
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
10000
10000
100
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEntrezUrlwebenv0key0db0url00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeencodebytes0base6400net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity
org.embl.ebi.escience.scuflworkers.java.EncodeBase64
commons-codec:commons-codec:1.3
workflow
commons-codec
commons-codec
1.3
1635363350
[B
true
bytes
0
'application/octet-stream'
0
base64
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEntrezKeylistKey0webenv00key00db00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedoSimilaritySearch2DstrKey0threshold0listKey00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateInputStructureBase64structure0format0strKey00net.sf.taverna.t2.activitiesdataflow-activity1.2net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecheckStatusKeyIngetEntrezUrlwebenvgetEntrezUrlkeygetEntrezUrldbencodebytesgetEntrezKeylistKeydoSimilaritySearch2DstrKeydoSimilaritySearch2DthresholdcreateInputStructureBase64structurecreateInputStructureBase64formatURLSuccess
fbda0408-6d0a-4f57-bcb1-7dc08c4c39bd
2010-07-14 13:07:40.470 BST
2010-05-27 15:32:58.343 BST
file-similarity-entrez-url
2010-05-27 15:32:58.343 BST
976dcb20-9c8d-42e2-9bf1-68b69b9a0cc2
2010-07-14 12:52:27.179 BST
db0d3bb1-0168-4a1a-a352-d568d142bf60
2010-07-14 12:16:55.442 BST
42b4a2df-6942-4cb4-ae4b-c9e016b3cde8
2010-07-14 12:32:04.471 BST
5a512754-6c59-4ff7-b8e4-34626d4c9f21
2010-07-14 12:13:48.958 BST
fe42c67d-0a77-4d77-8490-713ee66796a7
2010-07-14 12:59:11.839 BST
4767154a-bcdf-4f0a-a58c-3b6d710c2450
2010-07-14 13:05:09.997 BST
232022e0-70f2-4268-8c77-92c95d669395
2010-07-14 12:14:39.202 BST
ed4a1b93-e939-49ef-92d6-fb15dc4b0f18
2010-07-14 12:26:41.724 BST
2010-05-27 15:32:58.343 BST
0ca3cc51-48b9-4d2d-9c34-9075a62cf93f
2010-07-14 13:01:57.180 BST
Workflow7listKey00webenvkeydbGetEntrezKeyparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl
GetEntrezKey
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezKey_inputListKey0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetEntrezKey" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetEntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="ListKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}>GetEntrezKey>ListKey" /></s:elements></s:complextype></s:extensions>
false
ListKey
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezKey_outputinput0EntrezKey00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetEntrezKeyResponse" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetEntrezKeyResponse"><s:elements><s:complextype optional="false" unbounded="false" typename="EntrezKey" name="EntrezKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}>GetEntrezKeyResponse>EntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>db" /><s:basetype optional="false" unbounded="false" typename="string" name="key" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>key" /><s:basetype optional="false" unbounded="false" typename="string" name="webenv" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>webenv" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
EntrezKey
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezKey_EntrezKeyinput0webenv00key00db00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="EntrezKey" name="EntrezKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}>GetEntrezKeyResponse>EntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>db" /><s:basetype optional="false" unbounded="false" typename="string" name="key" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>key" /><s:basetype optional="false" unbounded="false" typename="string" name="webenv" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>webenv" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
db
0
'text/plain'
0
key
0
'text/plain'
0
webenv
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezKeyparametersGetEntrezKey_inputListKeyGetEntrezKey_outputinputGetEntrezKey_EntrezKeyinputwebenvkeydb
8d10f4bc-3c7c-4556-bde4-0b74884edd6a
2010-07-14 12:51:42.938 BST
Workflow26structure00format00strKeyInputStructureBase64parameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl
InputStructureBase64
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInputStructureBase64_inputstructure0format0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="InputStructureBase64" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}InputStructureBase64"><s:elements><s:basetype optional="false" unbounded="false" typename="base64Binary" name="structure" qname="{http://pubchem.ncbi.nlm.nih.gov/}>InputStructureBase64>structure" /><s:basetype optional="false" unbounded="false" typename="string" name="format" qname="{http://pubchem.ncbi.nlm.nih.gov/}>InputStructureBase64>format" /></s:elements></s:complextype></s:extensions>
false
structure
0
'application/octet-stream'
false
format
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInputStructureBase64_outputinput0StrKey00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="InputStructureBase64Response" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}InputStructureBase64Response"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="StrKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}>InputStructureBase64Response>StrKey" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
StrKey
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInputStructureBase64parametersInputStructureBase64_inputstructureInputStructureBase64_inputformatInputStructureBase64_outputinputstrKey
ce46a296-02ea-4c69-b05b-f92a94eabb71
2010-07-14 13:01:32.254 BST
Workflow15strKey00threshold00listKeySimilaritySearch2Dparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl
SimilaritySearch2D
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSimilaritySearch2D_inputStrKey0simOptions0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="SimilaritySearch2D" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearch2D"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="StrKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}>SimilaritySearch2D>StrKey" /><s:complextype optional="false" unbounded="false" typename="SimilaritySearchOptions" name="simOptions" qname="{http://pubchem.ncbi.nlm.nih.gov/}>SimilaritySearch2D>simOptions"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="threshold" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearchOptions>threshold" /><s:basetype optional="true" unbounded="false" typename="string" name="ToWebEnv" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearchOptions>ToWebEnv" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="LimitsType" name="limits" qname="{http://pubchem.ncbi.nlm.nih.gov/}>SimilaritySearch2D>limits"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="seconds" qname="{http://pubchem.ncbi.nlm.nih.gov/}LimitsType>seconds" /><s:basetype optional="true" unbounded="false" typename="int" name="maxRecords" qname="{http://pubchem.ncbi.nlm.nih.gov/}LimitsType>maxRecords" /><s:basetype optional="true" unbounded="false" typename="string" name="ListKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}LimitsType>ListKey" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions>
false
StrKey
0
'text/plain'
false
simOptions
0
'text/xml'
false
limits
0
'text/xml'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSimilaritySearch2D_outputinput0ListKey00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="SimilaritySearch2DResponse" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearch2DResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="ListKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}>SimilaritySearch2DResponse>ListKey" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
ListKey
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSimilaritySearch2D_simOptionsthreshold0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="SimilaritySearchOptions" name="simOptions" qname="{http://pubchem.ncbi.nlm.nih.gov/}>SimilaritySearch2D>simOptions"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="threshold" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearchOptions>threshold" /><s:basetype optional="true" unbounded="false" typename="string" name="ToWebEnv" qname="{http://pubchem.ncbi.nlm.nih.gov/}SimilaritySearchOptions>ToWebEnv" /></s:elements></s:complextype></s:extensions>
false
threshold
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'text/plain'
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ToWebEnv
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'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSimilaritySearch2DparametersSimilaritySearch2D_inputStrKeySimilaritySearch2D_inputsimOptionsSimilaritySearch2D_outputinputSimilaritySearch2D_simOptionsthresholdlistKey
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2010-07-14 12:58:49.9 BST
92995696-6411-4e91-a336-8998494996dc
2010-07-14 12:56:58.679 BST
statuscheckKeyIn00
2010-05-27 15:29:09.484 BST
text/plain
2010-05-27 15:29:09.484 BST
statusGetOperationStatus_inAnyKey0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetOperationStatus" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetOperationStatus"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="AnyKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}AnyKeyType>AnyKey" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
AnyKey
0
'text/plain'
0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetOperationStatus_outinput0status00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetOperationStatusResponse" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetOperationStatusResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="status" qname="{http://pubchem.ncbi.nlm.nih.gov/}>GetOperationStatusResponse>status" /></s:elements></s:complextype></s:extensions>
java.lang.String
true
input
0
'text/xml'
0
status
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetOperationStatusparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl
GetOperationStatus
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetOperationStatus_inAnyKeyGetOperationStatus_outinputGetOperationStatusparametersstatus
2010-05-27 15:29:10.171 BST
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2010-07-14 13:06:38.102 BST
2010-05-27 15:29:10.171 BST
c0856817-d989-448a-b8ba-5804e9ea7ccf
2010-07-14 12:13:49.149 BST
status-check
2010-05-27 15:29:10.171 BST
Workflow50db00key00webenv00urlGetEntrezUrlparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl
GetEntrezUrl
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezUrl_outputinput0url00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetEntrezUrlResponse" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetEntrezUrlResponse"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="url" qname="{http://pubchem.ncbi.nlm.nih.gov/}>GetEntrezUrlResponse>url" /></s:elements></s:complextype></s:extensions>
java.lang.String
false
input
0
'text/xml'
0
url
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezUrl_inputEntrezKey0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="GetEntrezUrl" name="parameters" qname="{http://pubchem.ncbi.nlm.nih.gov/}GetEntrezUrl"><s:elements><s:complextype optional="false" unbounded="false" typename="EntrezKey" name="EntrezKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}>GetEntrezUrl>EntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>db" /><s:basetype optional="false" unbounded="false" typename="string" name="key" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>key" /><s:basetype optional="false" unbounded="false" typename="string" name="webenv" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>webenv" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions>
false
EntrezKey
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output
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezUrl_EntrezKeydb0key0webenv0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="EntrezKey" name="EntrezKey" qname="{http://pubchem.ncbi.nlm.nih.gov/}>GetEntrezUrl>EntrezKey"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="db" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>db" /><s:basetype optional="false" unbounded="false" typename="string" name="key" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>key" /><s:basetype optional="false" unbounded="false" typename="string" name="webenv" qname="{http://pubchem.ncbi.nlm.nih.gov/}EntrezKey>webenv" /></s:elements></s:complextype></s:extensions>
false
db
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false
key
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false
webenv
0
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0
output
0
'text/xml'
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetEntrezUrlparametersGetEntrezUrl_outputinputGetEntrezUrl_inputEntrezKeyGetEntrezUrl_EntrezKeydbGetEntrezUrl_EntrezKeykeyGetEntrezUrl_EntrezKeywebenvurl
aedca46d-a10e-49ac-8f08-3801147debc5
2010-07-14 12:12:41.914 BST
58692b78-a496-4a55-8654-bf69484ab194
2010-07-14 12:30:29.373 BST