Workflow Entry: Fetch Dragon images from BioMoby

Created at: 05/03/08 @ 14:09:37 Last updated: 25/03/08 @ 14:42:00

Version 2 (latest) (of 2)

Version created on: 05/03/08 @ 14:09:35 by: Alan Williams | Revision comments Expand

Last edited on: 25/03/08 @ 14:41:59 by: Alan Williams

Title: Fetch Dragon images from BioMoby

Type: Taverna 1

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Description

Fetch images and annotations of snapdragons

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Download Workflow File/Package (SCUFL)

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Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/162/download?version=2
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Workflow Components

Inputs (0)

Processors (8)

Name	Type	Description
id	stringconstant
namespace	stringconstant
Decode_base64_to_byte	local
getJpegFromAnnotatedImage	biomobywsdl	This service takes in an annotated jpeg image and returns just the image.
getDragonSimpleAnnotatedImages	biomobywsdl	Consumes DragonDB allele identifiers and returns a collection of images of plants homozygous for that allele
Object	biomobyobject	an object
Parse_Moby_Data_JPEGImage	biomobyparser	Processor to parse the datatype b64_encoded_jpeg
Parse_Moby_Data_SimpleAnnotatedJPEGImage	biomobyparser	Processor to parse the datatype SimpleAnnotatedJPEGImage

Outputs (2)

Name	Description
images
annotations

Links (9)

Sink	Source
getDragonSimpleAnnotatedImages:Object(input)	Object:mobyData
Decode_base64_to_byte:base64	Parse_Moby_Data_JPEGImage:image_'content'
annotations	Parse_Moby_Data_SimpleAnnotatedJPEGImage:image_'Description'
Parse_Moby_Data_SimpleAnnotatedJPEGImage:mobyData('SimpleAnnotatedJPEGImage')	getDragonSimpleAnnotatedImages:SimpleAnnotatedJPEGImage(Collection - 'image' As Simples)
getJpegFromAnnotatedImage:SimpleAnnotatedJPEGImage(annotatedImage)	getDragonSimpleAnnotatedImages:SimpleAnnotatedJPEGImage(Collection - 'image' As Simples)
Parse_Moby_Data_JPEGImage:mobyData('b64_encoded_jpeg')	getJpegFromAnnotatedImage:b64_encoded_jpeg(image)
Object:id	id:value
Object:namespace	namespace:value
images	Decode_base64_to_byte:bytes