Workflow Entry: Fetch PDB flatfile from RCSB server

Created at: 05/03/08 @ 14:13:25 Last updated: 31/03/08 @ 16:01:42

Version 1 (of 1)

Version created on: 05/03/08 @ 14:13:24 by: Alan Williams | Revision comments Expand

Last edited on: 31/03/08 @ 16:01:41 by: Alan Williams

Title: Fetch PDB flatfile from RCSB server

Type: Taverna 1

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Fetch_pdb_flatfile_from_rcsb_server_27474_1

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Description

Given an identifier such as ‘1crn’ fetches the PDB format flatfile and returns the corresponding 3D image of the protein.

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Option 1:

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Option 2:

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http://www.myexperiment.org/workflows/167/download?version=1
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Workflow Components

Inputs (1)

Name	Description
pdbID	PDB identifier such as '1crn'

Processors (5)

Name	Type	Description
RCSBSuffix	stringconstant
RCSBPrefix	stringconstant
FetchPage	local
AddSuffix	local
AddPrefixToID	local

Outputs (1)

Name	Description
pdbFlatFile

Links (6)

Sink	Source
AddPrefixToID:string1	RCSBPrefix:value
AddPrefixToID:string2	pdbID
AddSuffix:string1	AddPrefixToID:output
AddSuffix:string2	RCSBSuffix:value
FetchPage:url	AddSuffix:output
pdbFlatFile	FetchPage:contents