PubMed_Search_XPathsearch_term00 text/plain 2011-03-23 10:53:17.746 GMT 2011-03-23 10:53:17.747 GMT pubmed_result text/plain 2011-03-23 10:53:17.748 GMT XPath_Service_nodelistpubmed_databasevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.stringconstant.StringConstantActivity pubmed net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_eSearchparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.WSDLActivity http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl run_eSearch net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparametersXMLterm0db0output00net.sf.taverna.t2.activitieswsdl-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity db 0 'text/plain' java.lang.String true term 0 'text/plain' java.lang.String true WebEnv 0 'text/plain' java.lang.String true QueryKey 0 'text/plain' java.lang.String true usehistory 0 'text/plain' java.lang.String true tool 0 'text/plain' java.lang.String true email 0 'text/plain' java.lang.String true field 0 'text/plain' java.lang.String true reldate 0 'text/plain' java.lang.String true mindate 0 'text/plain' java.lang.String true maxdate 0 'text/plain' java.lang.String true datetype 0 'text/plain' java.lang.String true RetStart 0 'text/plain' java.lang.String true RetMax 0 'text/plain' java.lang.String true rettype 0 'text/plain' java.lang.String true sort 0 'text/plain' java.lang.String true output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="eSearchRequest" name="parameters" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/esearch}eSearchRequest"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="db" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="term" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="WebEnv" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="QueryKey" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="usehistory" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="tool" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="email" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="field" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="reldate" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="mindate" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="maxdate" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="datetype" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="RetStart" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="RetMax" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="rettype" qname="{http://www.w3.org/2001/XMLSchema}string" /><s:basetype optional="true" unbounded="false" typename="string" name="sort" qname="{http://www.w3.org/2001/XMLSchema}string" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.3-SNAPSHOTnet.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <eSearchResult xmlns="http://www.ncbi.nlm.nih.gov/soap/eutils/esearch"><Count>98765</Count><RetMax>20</RetMax><RetStart>0</RetStart><IdList> <Id>21424213</Id> <Id>21423557</Id> <Id>21423109</Id> <Id>21422535</Id> <Id>21422156</Id> <Id>21421499</Id> <Id>21420793</Id> <Id>21420681</Id> <Id>21420343</Id> <Id>21420106</Id> <Id>21418443</Id> <Id>21417097</Id> <Id>21414205</Id> <Id>21412625</Id> <Id>21411756</Id> <Id>21410606</Id> <Id>21410116</Id> <Id>21409434</Id> <Id>21407177</Id> <Id>21404449</Id> </IdList><TranslationSet><Translation> <From>Blood Clotting</From> <To>"blood coagulation"[MeSH Terms] OR ("blood"[All Fields] AND "coagulation"[All Fields]) OR "blood coagulation"[All Fields] OR ("blood"[All Fields] AND "clotting"[All Fields]) OR "blood clotting"[All Fields]</To> </Translation></TranslationSet><TranslationStack> <TermSet> <Term>"blood coagulation"[MeSH Terms]</Term> <Field>MeSH Terms</Field> <Count>45978</Count> <Explode>Y</Explode> </TermSet> <TermSet> <Term>"blood"[All Fields]</Term> <Field>All Fields</Field> <Count>2706307</Count> <Explode>Y</Explode> </TermSet> <TermSet> <Term>"coagulation"[All Fields]</Term> <Field>All Fields</Field> <Count>115155</Count> <Explode>Y</Explode> </TermSet> <OP>AND</OP> <OP>GROUP</OP> <OP>OR</OP> <TermSet> <Term>"blood coagulation"[All Fields]</Term> <Field>All Fields</Field> <Count>67156</Count> <Explode>Y</Explode> </TermSet> <OP>OR</OP> <TermSet> <Term>"blood"[All Fields]</Term> <Field>All Fields</Field> <Count>2706307</Count> <Explode>Y</Explode> </TermSet> <TermSet> <Term>"clotting"[All Fields]</Term> <Field>All Fields</Field> <Count>16382</Count> <Explode>Y</Explode> </TermSet> <OP>AND</OP> <OP>GROUP</OP> <OP>OR</OP> <TermSet> <Term>"blood clotting"[All Fields]</Term> <Field>All Fields</Field> <Count>2908</Count> <Explode>Y</Explode> </TermSet> <OP>OR</OP> <OP>GROUP</OP> </TranslationStack><QueryTranslation>"blood coagulation"[MeSH Terms] OR ("blood"[All Fields] AND "coagulation"[All Fields]) OR "blood coagulation"[All Fields] OR ("blood"[All Fields] AND "clotting"[All Fields]) OR "blood clotting"[All Fields]</QueryTranslation></eSearchResult> /default:eSearchResult/default:IdList default http://www.ncbi.nlm.nih.gov/soap/eutils/esearch net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3-SNAPSHOTnet.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_eSearchparametersparametersXMLoutputparametersXMLtermsearch_termparametersXMLdbpubmed_databasevalueXPath_Servicexml_textrun_eSearchparameterspubmed_resultrun_eSearchparametersXPath_Service_nodelistXPath_Servicenodelist PubMed Search XPath 2011-03-23 15:55:56.124 GMT XPath Pubmed Ids 2011-03-23 10:53:39.693 GMT Paul Fisher 2011-03-23 10:53:39.693 GMT dc1392b6-185d-4d7c-abf7-949563131ba3 2011-03-23 15:55:25.673 GMT This workflow takes in a number of search terms (as used in the normal PubMed interface) and retrieves a list of PubMed ids in a list format. 2011-03-23 10:53:39.693 GMT This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in a list format. 2011-03-23 11:01:57.516 GMT f7a0f1c0-c2b9-4085-92f6-3528e363997d 2011-03-23 15:56:32.578 GMT This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in xml. The xml is then parsed to retrieve a list of PubMed ids 2011-03-23 15:56:21.622 GMT PubMed Search 2011-03-23 11:01:49.517 GMT 4b15a2c1-e64b-426e-b544-64536fa11946 2011-03-23 11:02:33.82 GMT This workflow takes in a search term (as used in the normal PubMed interface) and retrieves a list of PubMed ids in xml 2011-03-23 11:02:03.779 GMT