Workflow Entry: EBI WU-BLAST with prompt

Created at: 30/05/08 @ 22:56:50 Last updated: 02/06/08 @ 21:30:43

Version 2 (latest) (of 2)

Version created on: 30/05/08 @ 22:56:49 by: Hamish McWilliam | Revision comments Expand

Last edited on: 02/06/08 @ 21:30:43 by: Hamish McWilliam

Title: EBI WU-BLAST with prompt

Type: Taverna 1

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Description

Run a BLAST analysis using the EBI’s WSWUBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/wublast). This workflow wraps the EBI_WU-BLAST workflow to provide a basic user interface which prompts for the required inputs: sequence, database, BLAST program and user e-mail. Other parameters (e.g. matrix, sort, gap penalties, etc.) are allowed to default.

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Download Workflow File/Package (SCUFL)

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Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/198/download?version=2
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Workflow Components

Inputs (0)

Processors (7)

Name	Type	Description
Ask_for_sequence	local	Ask for the input sequence (fasta format recommended) or a sequence Id in "database:id" format (e.g. uniprot:wap_rat).
Make_database_list	local	A list of database names to use in a select.
Select_program	local	Select the BLAST program to use for the search.
Select_database	local	Select the database to search.
Ask_for_email	local	Ask for the user's e-mail address.
Make_program_list	local	A liast or program names to use in the select.
EBI_WU_BLAST	workflow	Run a BLAST analysis using the EBI's WU-BLAST service (see http://www.ebi.ac.uk/Tools/webservices/services/wublast).

Outputs (1)

Name	Description
BLAST Report	Output report of the BLAST analysis.

Links (7)

Sink	Source
EBI_WU_BLAST:E-mail Address	Ask_for_email:answer
EBI_WU_BLAST:Sequence or ID	Ask_for_sequence:answer
Select_database:valueList	Make_database_list:split
Select_program:valueList	Make_program_list:split
EBI_WU_BLAST:Search Database	Select_database:answer
EBI_WU_BLAST:BLAST Program	Select_program:answer
BLAST Report	EBI_WU_BLAST:Text Result