Parsed_UniProt_to_PubMed_resultsparsed_uniprot00 The parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html). (File location) 2011-04-01 12:01:04.809 BST Uses the parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html) to retrieve information from PubMed. 2011-04-01 12:00:52.309 BST 2011-04-01 12:00:58.168 BST The parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html). 2011-04-01 12:00:54.981 BST PubMed_Results_2get_identifiers_from_uniprot_2_2identifier_name0parsed_uniprot0out111net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true parsed_uniprot 0 text/plain java.lang.String true identifier_name 0 text/plain 1 out1 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePubMedvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity PubMed net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesearchCitationsparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.WSDLActivity http://www.ebi.ac.uk/webservices/citexplore/v1.0/service?wsdl searchCitations net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesearchCitations_inputluceneQueryString0email0outputFormat0offSet0output00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="searchCitations" name="parameters" qname="{http://webservice.cdb.ebi.ac.uk/}searchCitations"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="luceneQueryString" qname="searchCitations&gt;luceneQueryString" /><s:basetype optional="true" unbounded="false" typename="string" name="outputFormat" qname="searchCitations&gt;outputFormat" /><s:basetype optional="false" unbounded="false" typename="int" name="offSet" qname="searchCitations&gt;offSet" /><s:basetype optional="true" unbounded="false" typename="string" name="email" qname="searchCitations&gt;email" /></s:elements></s:complextype></s:extensions> false luceneQueryString 0 'text/plain' false outputFormat 0 'text/plain' false offSet 0 'text/plain' false email 0 'text/plain' 0 output 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesearchCitations_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.2net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="searchCitationsResponse" name="parameters" qname="{http://webservice.cdb.ebi.ac.uk/}searchCitationsResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="resultListBean" name="return" qname="searchCitationsResponse&gt;return"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="hitCount" qname="resultListBean&gt;hitCount" /><s:basetype optional="false" unbounded="false" typename="int" name="offSet" qname="resultListBean&gt;offSet" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="resultBean" name="resultBeanCollection" qname="resultListBean&gt;resultBeanCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="resultBean" name="" qname="{http://webservice.cdb.ebi.ac.uk/}resultBean"><s:elements><s:complextype optional="true" unbounded="false" typename="citation" name="citation" qname="resultBean&gt;citation"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="abstractText" qname="citation&gt;abstractText" /><s:basetype optional="true" unbounded="false" typename="string" name="affiliation" qname="citation&gt;affiliation" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="author" name="authorCollection" qname="citation&gt;authorCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="author" name="" qname="{http://webservice.cdb.ebi.ac.uk/}author"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="citationId" qname="author&gt;citationId" /><s:basetype optional="true" unbounded="false" typename="string" name="collectiveName" qname="author&gt;collectiveName" /><s:basetype optional="true" unbounded="false" typename="string" name="fullName" qname="author&gt;fullName" /><s:basetype optional="true" unbounded="false" typename="string" name="initials" qname="author&gt;initials" /><s:basetype optional="true" unbounded="false" typename="string" name="initialsNonAscii" qname="author&gt;initialsNonAscii" /><s:basetype optional="true" unbounded="false" typename="string" name="lastName" qname="author&gt;lastName" /><s:basetype optional="true" unbounded="false" typename="string" name="lastNameNonAscii" qname="author&gt;lastNameNonAscii" /><s:basetype optional="true" unbounded="false" typename="short" name="orderIn" qname="author&gt;orderIn" /><s:basetype optional="true" unbounded="false" typename="string" name="suffix" qname="author&gt;suffix" /><s:basetype optional="true" unbounded="false" typename="string" name="suffixNonAscii" qname="author&gt;suffixNonAscii" /><s:basetype optional="true" unbounded="false" typename="string" name="valid" qname="author&gt;valid" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:complextype optional="true" unbounded="false" typename="bookOrReport" name="bookOrReportDetails" qname="citation&gt;bookOrReportDetails"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="citationId" qname="bookOrReport&gt;citationId" /><s:basetype optional="true" unbounded="false" typename="string" name="comprisingTitle" qname="bookOrReport&gt;comprisingTitle" /><s:basetype optional="true" unbounded="false" typename="string" name="comprisingTitleNonAscii" qname="bookOrReport&gt;comprisingTitleNonAscii" /><s:basetype optional="true" unbounded="false" typename="string" name="edition" qname="bookOrReport&gt;edition" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="editor" name="editorCollection" qname="bookOrReport&gt;editorCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="editor" name="" qname="{http://webservice.cdb.ebi.ac.uk/}editor"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="citationId" qname="editor&gt;citationId" /><s:basetype optional="true" unbounded="false" typename="string" name="collectiveName" qname="editor&gt;collectiveName" /><s:basetype optional="true" unbounded="false" typename="string" name="initials" qname="editor&gt;initials" /><s:basetype optional="true" unbounded="false" typename="string" name="initialsNonAscii" qname="editor&gt;initialsNonAscii" /><s:basetype optional="true" unbounded="false" typename="string" name="lastName" qname="editor&gt;lastName" /><s:basetype optional="true" unbounded="false" typename="string" name="lastNameNonAscii" qname="editor&gt;lastNameNonAscii" /><s:basetype optional="false" unbounded="false" typename="short" name="orderIn" qname="editor&gt;orderIn" /><s:basetype optional="true" unbounded="false" typename="string" name="suffix" qname="editor&gt;suffix" /><s:basetype optional="true" unbounded="false" typename="string" name="suffixNonAscii" qname="editor&gt;suffixNonAscii" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="extraInformation" qname="bookOrReport&gt;extraInformation" /><s:basetype optional="true" unbounded="false" typename="string" name="isbn10" qname="bookOrReport&gt;isbn10" /><s:basetype optional="true" unbounded="false" typename="string" name="isbn13" qname="bookOrReport&gt;isbn13" /><s:basetype optional="true" unbounded="false" typename="string" name="numberOfPages" qname="bookOrReport&gt;numberOfPages" /><s:basetype optional="true" unbounded="false" typename="byte" name="publicationDay" qname="bookOrReport&gt;publicationDay" /><s:basetype optional="true" unbounded="false" typename="byte" name="publicationMonth" qname="bookOrReport&gt;publicationMonth" /><s:basetype optional="true" unbounded="false" typename="short" name="publicationYear" qname="bookOrReport&gt;publicationYear" /><s:basetype optional="true" unbounded="false" typename="string" name="publisher" qname="bookOrReport&gt;publisher" /><s:basetype optional="true" unbounded="false" typename="string" name="seriesIssn" qname="bookOrReport&gt;seriesIssn" /><s:basetype optional="true" unbounded="false" typename="string" name="seriesName" qname="bookOrReport&gt;seriesName" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="dateTime" name="cachedAt" qname="citation&gt;cachedAt" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="chemical" name="chemicalCollection" qname="citation&gt;chemicalCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="chemical" name="" qname="{http://webservice.cdb.ebi.ac.uk/}chemical"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="id" qname="chemical&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="chemical&gt;name" /><s:basetype optional="true" unbounded="false" typename="string" name="registryNumber" qname="chemical&gt;registryNumber" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="comment" name="commentsAndCorrectionsCollection" qname="citation&gt;commentsAndCorrectionsCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="comment" name="" qname="{http://webservice.cdb.ebi.ac.uk/}comment"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="citationId" qname="comment&gt;citationId" /><s:basetype optional="true" unbounded="false" typename="string" name="externalId" qname="comment&gt;externalId" /><s:basetype optional="true" unbounded="false" typename="string" name="note" qname="comment&gt;note" /><s:basetype optional="false" unbounded="false" typename="byte" name="orderIn" qname="comment&gt;orderIn" /><s:basetype optional="true" unbounded="false" typename="string" name="reference" qname="comment&gt;reference" /><s:basetype optional="true" unbounded="false" typename="string" name="source" qname="comment&gt;source" /><s:basetype optional="true" unbounded="false" typename="string" name="type" qname="comment&gt;type" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="authorsConcatenation" name="concatenatedAuthorsCollection" qname="citation&gt;concatenatedAuthorsCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="authorsConcatenation" name="" qname="{http://webservice.cdb.ebi.ac.uk/}authorsConcatenation"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="authorsConcatenation" qname="authorsConcatenation&gt;authorsConcatenation" /><s:basetype optional="true" unbounded="false" typename="string" name="authorsConcatenation_clob" qname="authorsConcatenation&gt;authorsConcatenation_clob" /><s:basetype optional="true" unbounded="false" typename="int" name="citationId" qname="authorsConcatenation&gt;citationId" /><s:basetype optional="true" unbounded="false" typename="string" name="hasNonAsciiCharacters" qname="authorsConcatenation&gt;hasNonAsciiCharacters" /><s:basetype optional="true" unbounded="false" typename="string" name="validAuthorsConcatenation" qname="authorsConcatenation&gt;validAuthorsConcatenation" /><s:basetype optional="true" unbounded="false" typename="string" name="validAuthorsConcatenation_clob" qname="authorsConcatenation&gt;validAuthorsConcatenation_clob" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="crossReference" name="crossReferenceAltSpliceFunCollection" qname="citation&gt;crossReferenceAltSpliceFunCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="crossReference" name="" qname="{http://webservice.cdb.ebi.ac.uk/}crossReference"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="dataSource" qname="crossReference&gt;dataSource" /><s:basetype optional="true" unbounded="false" typename="string" name="externalId" qname="crossReference&gt;externalId" /><s:basetype optional="true" unbounded="false" typename="string" name="info1" qname="crossReference&gt;info1" /><s:basetype optional="true" unbounded="false" typename="string" name="info2" qname="crossReference&gt;info2" /><s:basetype optional="true" unbounded="false" typename="string" name="info3" qname="crossReference&gt;info3" /><s:basetype optional="true" unbounded="false" typename="string" name="info4" qname="crossReference&gt;info4" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="crossReference" name="crossReferenceAltSpliceSeqCollection" qname="citation&gt;crossReferenceAltSpliceSeqCollection"><s:elementtype><s:complextype id="{http://webservice.cdb.ebi.ac.uk/}crossReference" optional="false" unbounded="false" typename="crossReference" name="" /></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="crossReference" name="crossReferenceEMBLCollection" qname="citation&gt;crossReferenceEMBLCollection"><s:elementtype><s:complextype id="{http://webservice.cdb.ebi.ac.uk/}crossReference" optional="false" unbounded="false" typename="crossReference" name="" /></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="crossReference" name="crossReferenceInterproCollection" qname="citation&gt;crossReferenceInterproCollection"><s:elementtype><s:complextype id="{http://webservice.cdb.ebi.ac.uk/}crossReference" optional="false" unbounded="false" typename="crossReference" name="" /></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="crossReference" name="crossReferenceUniprotCollection" qname="citation&gt;crossReferenceUniprotCollection"><s:elementtype><s:complextype id="{http://webservice.cdb.ebi.ac.uk/}crossReference" optional="false" unbounded="false" typename="crossReference" name="" /></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="crossReference" name="crossReferencesChEBICollection" qname="citation&gt;crossReferencesChEBICollection"><s:elementtype><s:complextype id="{http://webservice.cdb.ebi.ac.uk/}crossReference" optional="false" unbounded="false" typename="crossReference" name="" /></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="crossReference" name="crossReferencesIntactCollection" qname="citation&gt;crossReferencesIntactCollection"><s:elementtype><s:complextype id="{http://webservice.cdb.ebi.ac.uk/}crossReference" optional="false" unbounded="false" typename="crossReference" name="" /></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="crossReference" name="crossReferencesMSDCollection" qname="citation&gt;crossReferencesMSDCollection"><s:elementtype><s:complextype id="{http://webservice.cdb.ebi.ac.uk/}crossReference" optional="false" unbounded="false" typename="crossReference" name="" /></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="dataSource" qname="citation&gt;dataSource" /><s:basetype optional="true" unbounded="false" typename="dateTime" name="dateOfCompletion" qname="citation&gt;dateOfCompletion" /><s:basetype optional="true" unbounded="false" typename="dateTime" name="dateOfCreation" qname="citation&gt;dateOfCreation" /><s:basetype optional="true" unbounded="false" typename="dateTime" name="dateOfRevision" qname="citation&gt;dateOfRevision" /><s:basetype optional="true" unbounded="false" typename="string" name="externalId" qname="citation&gt;externalId" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="geneOntology" name="geneOntologyCollection" qname="citation&gt;geneOntologyCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="geneOntology" name="" qname="{http://webservice.cdb.ebi.ac.uk/}geneOntology"><s:elements><s:basetype optional="true" unbounded="false" typename="decimal" name="citationId" qname="geneOntology&gt;citationId" /><s:basetype optional="true" unbounded="false" typename="string" name="goId" qname="geneOntology&gt;goId" /><s:basetype optional="true" unbounded="false" typename="string" name="goTerm" qname="geneOntology&gt;goTerm" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="grant" name="grantCollection" qname="citation&gt;grantCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="grant" name="" qname="{http://webservice.cdb.ebi.ac.uk/}grant"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="acronym" qname="grant&gt;acronym" /><s:basetype optional="true" unbounded="false" typename="string" name="agency" qname="grant&gt;agency" /><s:basetype optional="false" unbounded="false" typename="int" name="citationId" qname="grant&gt;citationId" /><s:basetype optional="true" unbounded="false" typename="string" name="grantId" qname="grant&gt;grantId" /><s:basetype optional="false" unbounded="false" typename="short" name="orderIn" qname="grant&gt;orderIn" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="int" name="id" qname="citation&gt;id" /><s:complextype optional="true" unbounded="false" typename="journalIssue" name="journalIssue" qname="citation&gt;journalIssue"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="dateOfPublication" qname="journalIssue&gt;dateOfPublication" /><s:basetype optional="true" unbounded="false" typename="int" name="id" qname="journalIssue&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="issue" qname="journalIssue&gt;issue" /><s:complextype optional="true" unbounded="false" typename="journal" name="journal" qname="journalIssue&gt;journal"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="ESSN" qname="journal&gt;ESSN" /><s:basetype optional="true" unbounded="false" typename="string" name="ISOAbbreviation" qname="journal&gt;ISOAbbreviation" /><s:basetype optional="true" unbounded="false" typename="string" name="ISSN" qname="journal&gt;ISSN" /><s:basetype optional="true" unbounded="false" typename="int" name="id" qname="journal&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="medlineAbbreviation" qname="journal&gt;medlineAbbreviation" /><s:basetype optional="true" unbounded="false" typename="string" name="NLMid" qname="journal&gt;NLMid" /><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="journal&gt;title" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="byte" name="monthOfPublication" qname="journalIssue&gt;monthOfPublication" /><s:basetype optional="true" unbounded="false" typename="string" name="volume" qname="journalIssue&gt;volume" /><s:basetype optional="true" unbounded="false" typename="short" name="yearOfPublication" qname="journalIssue&gt;yearOfPublication" /></s:elements></s:complextype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="keyword" name="keywordCollection" qname="citation&gt;keywordCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="keyword" name="" qname="{http://webservice.cdb.ebi.ac.uk/}keyword"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="eurofirCode" qname="keyword&gt;eurofirCode" /><s:basetype optional="true" unbounded="false" typename="int" name="id" qname="keyword&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="keyword" qname="keyword&gt;keyword" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="language" qname="citation&gt;language" /><s:complextype optional="true" unbounded="false" typename="medlineXml" name="medlineXML" qname="citation&gt;medlineXML"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="dataSource" qname="medlineXml&gt;dataSource" /><s:basetype optional="true" unbounded="false" typename="string" name="pubmedID" qname="medlineXml&gt;pubmedID" /><s:basetype optional="true" unbounded="false" typename="string" name="XML" qname="medlineXml&gt;XML" /></s:elements></s:complextype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="meshHeading" name="meshCollection" qname="citation&gt;meshCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="meshHeading" name="" qname="{http://webservice.cdb.ebi.ac.uk/}meshHeading"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="citationId" qname="meshHeading&gt;citationId" /><s:basetype optional="true" unbounded="false" typename="string" name="majorTopic_YN" qname="meshHeading&gt;majorTopic_YN" /><s:complextype optional="true" unbounded="false" typename="meshHeadingType" name="meshHeadingType" qname="meshHeading&gt;meshHeadingType"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="descriptor" qname="meshHeadingType&gt;descriptor" /><s:basetype optional="true" unbounded="false" typename="int" name="id" qname="meshHeadingType&gt;id" /></s:elements></s:complextype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="meshQualifier" name="meshQualifierCollection" qname="meshHeading&gt;meshQualifierCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="meshQualifier" name="" qname="{http://webservice.cdb.ebi.ac.uk/}meshQualifier"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="majorTopic_YN" qname="meshQualifier&gt;majorTopic_YN" /><s:complextype optional="true" unbounded="false" typename="meshQualifierType" name="meshQualifierType" qname="meshQualifier&gt;meshQualifierType"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="abbreviation" qname="meshQualifierType&gt;abbreviation" /><s:basetype optional="true" unbounded="false" typename="string" name="id" qname="meshQualifierType&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="qualifier" qname="meshQualifierType&gt;qualifier" /></s:elements></s:complextype></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="originalTitle" qname="citation&gt;originalTitle" /><s:basetype optional="true" unbounded="false" typename="string" name="pageInfo" qname="citation&gt;pageInfo" /><s:complextype optional="true" unbounded="false" typename="patentAbstractXml" name="patentAbstractXML" qname="citation&gt;patentAbstractXML"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="dataSource" qname="patentAbstractXml&gt;dataSource" /><s:basetype optional="true" unbounded="false" typename="string" name="patentNumber" qname="patentAbstractXml&gt;patentNumber" /><s:basetype optional="true" unbounded="false" typename="string" name="XML" qname="patentAbstractXml&gt;XML" /></s:elements></s:complextype><s:complextype optional="true" unbounded="false" typename="patentDetails" name="patentDetails" qname="citation&gt;patentDetails"><s:elements><s:basetype optional="true" unbounded="false" typename="int" name="citationId" qname="patentDetails&gt;citationId" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="patentClassifier" name="classifierCollection" qname="patentDetails&gt;classifierCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="patentClassifier" name="" qname="{http://webservice.cdb.ebi.ac.uk/}patentClassifier"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="classification" qname="patentClassifier&gt;classification" /><s:basetype optional="true" unbounded="false" typename="string" name="classificationType" qname="patentClassifier&gt;classificationType" /><s:basetype optional="true" unbounded="false" typename="string" name="hyperlink" qname="patentClassifier&gt;hyperlink" /><s:basetype optional="true" unbounded="false" typename="int" name="patentDetailId" qname="patentClassifier&gt;patentDetailId" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="country" qname="patentDetails&gt;country" /><s:basetype optional="true" unbounded="false" typename="string" name="countryCode" qname="patentDetails&gt;countryCode" /><s:basetype optional="true" unbounded="false" typename="int" name="patentDetailId" qname="patentDetails&gt;patentDetailId" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="secondaryNumber" name="secondaryNumberCollection" qname="patentDetails&gt;secondaryNumberCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="secondaryNumber" name="" qname="{http://webservice.cdb.ebi.ac.uk/}secondaryNumber"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="dataType" qname="secondaryNumber&gt;dataType" /><s:basetype optional="true" unbounded="false" typename="short" name="orderIn" qname="secondaryNumber&gt;orderIn" /><s:basetype optional="true" unbounded="false" typename="int" name="patentDetailId" qname="secondaryNumber&gt;patentDetailId" /><s:basetype optional="true" unbounded="false" typename="string" name="value" qname="secondaryNumber&gt;value" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="typeCode" qname="patentDetails&gt;typeCode" /><s:basetype optional="true" unbounded="false" typename="string" name="typeDescription" qname="patentDetails&gt;typeDescription" /></s:elements></s:complextype><s:basetype optional="true" unbounded="false" typename="string" name="pubModel" qname="citation&gt;pubModel" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="publicationType" name="pubTypeCollection" qname="citation&gt;pubTypeCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="publicationType" name="" qname="{http://webservice.cdb.ebi.ac.uk/}publicationType"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="description" qname="publicationType&gt;description" /><s:basetype optional="true" unbounded="false" typename="int" name="id" qname="publicationType&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="publicationType&gt;name" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="reference" name="referenceCollection" qname="citation&gt;referenceCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="reference" name="" qname="{http://webservice.cdb.ebi.ac.uk/}reference"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="authors" qname="reference&gt;authors" /><s:basetype optional="true" unbounded="false" typename="string" name="citationType" qname="reference&gt;citationType" /><s:basetype optional="false" unbounded="false" typename="int" name="citedOrder" qname="reference&gt;citedOrder" /><s:basetype optional="true" unbounded="false" typename="string" name="comments" qname="reference&gt;comments" /><s:basetype optional="true" unbounded="false" typename="string" name="doi" qname="reference&gt;doi" /><s:basetype optional="true" unbounded="false" typename="string" name="edition" qname="reference&gt;edition" /><s:basetype optional="true" unbounded="false" typename="string" name="editors" qname="reference&gt;editors" /><s:basetype optional="true" unbounded="false" typename="string" name="essn" qname="reference&gt;essn" /><s:basetype optional="true" unbounded="false" typename="string" name="externalId" qname="reference&gt;externalId" /><s:basetype optional="true" unbounded="false" typename="string" name="externalLink" qname="reference&gt;externalLink" /><s:basetype optional="true" unbounded="false" typename="decimal" name="id" qname="reference&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="isbn" qname="reference&gt;isbn" /><s:basetype optional="true" unbounded="false" typename="string" name="issn" qname="reference&gt;issn" /><s:basetype optional="true" unbounded="false" typename="string" name="issue" qname="reference&gt;issue" /><s:basetype optional="true" unbounded="false" typename="string" name="journalAbbr" qname="reference&gt;journalAbbr" /><s:basetype optional="true" unbounded="false" typename="string" name="match" qname="reference&gt;match" /><s:basetype optional="true" unbounded="false" typename="string" name="pageInfo" qname="reference&gt;pageInfo" /><s:basetype optional="false" unbounded="false" typename="int" name="parentId" qname="reference&gt;parentId" /><s:basetype optional="false" unbounded="false" typename="int" name="pubYear" qname="reference&gt;pubYear" /><s:basetype optional="true" unbounded="false" typename="string" name="publisherLoc" qname="reference&gt;publisherLoc" /><s:basetype optional="true" unbounded="false" typename="string" name="publisherName" qname="reference&gt;publisherName" /><s:basetype optional="true" unbounded="false" typename="string" name="refId" qname="reference&gt;refId" /><s:basetype optional="true" unbounded="false" typename="string" name="seriesName" qname="reference&gt;seriesName" /><s:basetype optional="true" unbounded="false" typename="string" name="source" qname="reference&gt;source" /><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="reference&gt;title" /><s:basetype optional="true" unbounded="false" typename="string" name="unstructuredInformation" qname="reference&gt;unstructuredInformation" /><s:basetype optional="true" unbounded="false" typename="string" name="volume" qname="reference&gt;volume" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="textFragment" name="refererCollection" qname="citation&gt;refererCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="textFragment" name="" qname="{http://webservice.cdb.ebi.ac.uk/}textFragment"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="citationId" qname="textFragment&gt;citationId" /><s:basetype optional="false" unbounded="false" typename="int" name="lineNum" qname="textFragment&gt;lineNum" /><s:basetype optional="false" unbounded="false" typename="int" name="orderInReference" qname="textFragment&gt;orderInReference" /><s:basetype optional="true" unbounded="false" typename="string" name="referencedBy_ExternalId" qname="textFragment&gt;referencedBy_ExternalId" /><s:basetype optional="true" unbounded="false" typename="string" name="referencedBy_Source" qname="textFragment&gt;referencedBy_Source" /><s:basetype optional="true" unbounded="false" typename="string" name="text" qname="textFragment&gt;text" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="subSet" name="subsetCollection" qname="citation&gt;subsetCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="subSet" name="" qname="{http://webservice.cdb.ebi.ac.uk/}subSet"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="code" qname="subSet&gt;code" /><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="subSet&gt;name" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="citation&gt;title" /><s:basetype optional="true" unbounded="false" typename="string" name="titleNonAscii" qname="citation&gt;titleNonAscii" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="fullTextURL" name="urlCollection" qname="citation&gt;urlCollection"><s:elementtype><s:complextype optional="false" unbounded="false" typename="fullTextURL" name="" qname="{http://webservice.cdb.ebi.ac.uk/}fullTextURL"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="availability" qname="fullTextURL&gt;availability" /><s:basetype optional="true" unbounded="false" typename="string" name="availabilityCode" qname="fullTextURL&gt;availabilityCode" /><s:basetype optional="true" unbounded="false" typename="string" name="documentStyle" qname="fullTextURL&gt;documentStyle" /><s:basetype optional="true" unbounded="false" typename="string" name="externalId" qname="fullTextURL&gt;externalId" /><s:basetype optional="true" unbounded="false" typename="string" name="id" qname="fullTextURL&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="site" qname="fullTextURL&gt;site" /><s:basetype optional="true" unbounded="false" typename="string" name="source" qname="fullTextURL&gt;source" /><s:basetype optional="true" unbounded="false" typename="string" name="url" qname="fullTextURL&gt;url" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype><s:basetype optional="false" unbounded="false" typename="float" name="score" qname="resultBean&gt;score" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elements></s:complextype></s:extensions> java.lang.String false input 0 'text/xml' 0 return 0 'text/xml' net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeemailvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity m.l.taschuk@ncl.ac.uk net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecorevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity core net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokezerovalue00net.sf.taverna.t2.activitiesstringconstant-activity1.2net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedeXMLerin10out100net.sf.taverna.t2.activitiesbeanshell-activity1.2net.sf.taverna.t2.activities.beanshell.BeanshellActivity workflow java.lang.String true in1 0 text/plain 0 out1 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringdata1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.2net.sf.taverna.t2.activities.localworker.LocalworkerActivity org.embl.ebi.escience.scuflworkers.java.StringListMerge workflow java.lang.String true seperator 0 'text/plain' java.lang.String true data 1 text/plain 0 concatenated 0 UserNameHere 2011-03-30 16:29:15.546 BST UserNameHere 2011-03-30 16:27:49.467 BST UserNameHere 2011-03-30 16:25:55.280 BST UserNameHere 2011-03-30 16:51:40.964 BST net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.2net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_identifiers_from_uniprot_2_2identifier_namePubMedvalueget_identifiers_from_uniprot_2_2parsed_uniprotparsed_uniprotsearchCitationsparameterssearchCitations_inputoutputsearchCitations_inputluceneQueryStringget_identifiers_from_uniprot_2_2out1searchCitations_inputemailemailvaluesearchCitations_inputoutputFormatcorevaluesearchCitations_inputoffSetzerovaluesearchCitations_outputinputsearchCitationsparametersdeXMLerin1searchCitations_outputreturnMerge_String_List_to_a_StringdatadeXMLerout1PubMed_Results_2Merge_String_List_to_a_Stringconcatenated 531a8205-e72e-4a14-b99e-d72154909b92 2011-03-31 20:50:26.494 BST 4a513a74-4ff9-43e4-b869-e48ac1ac8ac5 2011-04-01 11:57:24.815 BST 627bcf2b-9512-4e79-9f6b-470f3910b765 2011-03-31 22:53:29.457 BST Parsed UniProt to 2011-04-01 12:02:01.186 BST b485a670-0c3e-4b3b-b0e8-9c969011217f 2011-03-30 20:05:24.997 BST b7314f4a-d93a-4582-b782-a1aef5b386f2 2011-03-25 15:22:44.991 GMT 5c7ab668-f89d-4da0-a35a-8f08cf5348a6 2011-03-30 20:28:06.400 BST b44d1586-4b9f-46e8-84e1-8bc9f901faa3 2011-03-31 23:45:25.780 BST 8a4f5011-5f78-4264-a899-ce5fda4644c4 2011-04-01 12:02:51.794 BST 2c17cf54-dbb3-42e5-8e1e-ee7d0360b768 2011-03-31 17:38:23.5 BST faee7798-f653-4d07-b6bb-1c4e71e4222e 2011-04-01 11:27:03.849 BST 781051a8-81d5-4b14-9e4c-09c95ad8c9f8 2011-04-01 00:21:45.475 BST c8ffe6bc-0577-4a7a-8f5a-5a29d311f809 2011-03-30 20:25:19.255 BST fc0f8722-ba6e-43bb-b1dd-0c2444028c30 2011-04-01 10:36:43.985 BST ad1f7543-4798-46d6-9811-3cab9cc8bf2e 2011-04-01 11:59:19.784 BST 6353f76e-d241-4b18-910a-d4d19ec2ed71 2011-03-31 21:25:39.593 BST 806afaae-4232-4141-97af-5dbd5a437fa3 2011-04-01 02:57:41.919 BST 882b7448-8cd8-4abc-9474-168d797ade7e 2011-04-01 01:54:29.114 BST d009369e-c283-403f-9b0e-f0554631e1da 2011-03-31 23:47:20.574 BST 50b9c052-1ee1-423b-bc8c-05eeb82d39f2 2011-03-30 10:42:56.949 BST a149bb84-02f1-4295-a75b-ed7282796efd 2011-03-31 17:32:24.433 BST 40ee0320-dc68-48e4-9ff8-2a8be39a3308 2011-03-31 21:48:34.121 BST efe69d39-5ebc-4cd6-9102-ef61d7a3913e 2011-03-30 10:47:51.219 BST 08be2a06-ae0a-47c6-a0ec-306b17161c36 2011-03-31 15:42:08.915 BST f93a61d2-330c-4418-a4bf-31434b3298b3 2011-03-31 23:55:41.429 BST 8f8386df-6385-453c-9550-9c24583c9249 2011-03-28 13:56:08.131 BST f6558964-cc08-45b1-8ead-2700014d51df 2011-03-25 19:11:46.295 GMT 595cc410-b061-4ba6-967d-9fe586132561 2011-03-31 23:51:38.227 BST Uses the parsed Uniprot results (see workflow http://www.myexperiment.org/workflows/26.html) to retrieve information from PubMed. 2011-04-01 12:02:41.316 BST 299440f3-f6cb-4917-90a8-f9e27b4f9792 2011-03-30 20:34:33.670 BST daf61cd4-8796-4f36-bc20-e765960d9f4b 2011-03-31 19:23:55.564 BST c50df741-8cbb-402a-a3aa-ce106a8a622b 2011-04-01 01:54:00.923 BST 71f23402-77b6-4c3e-bbea-d07686d36de9 2011-03-31 20:25:08.531 BST 7cd5bdbd-66f3-4c98-9367-7126756d2f54 2011-04-01 00:51:28.171 BST dc46f972-c7a8-409d-993a-7c3edb1e504c 2011-04-01 11:54:48.474 BST ff808d5b-0681-427f-b2a3-90f89b5b9128 2011-03-31 22:49:45.469 BST 5c4c34f7-7cea-4ace-9973-4051ecb08c85 2011-03-31 23:18:50.41 BST 63826d21-9052-48ee-9725-0f828b9c6875 2011-03-31 23:57:29.611 BST 1d3a29d6-0fa8-43ab-b83a-fcad500c3a34 2011-03-31 20:40:24.959 BST b45c784f-e7d7-41e2-a19f-84365ccc64e5 2011-04-01 00:56:47.15 BST 40329737-b8f1-41ed-839c-27d919202a35 2011-03-31 20:05:43.488 BST Comparison of the genome of <i>Bacillus anthracis</i> to closely related strains will allow the discovery of proteins which may be involved in pathogenicity. Based on the biochemical pathways where the protein interacts, vaccines can be designed for these unique proteins. By gaining insight into the biochemical pathways that the unique proteins are involved in, the proteins can also be assessed for potential quality as vaccines. The key components of the vaccine finding system are the following: The vaccine finding system reads in at least two annotated whole genome sequences in EMBL or GenBank format; the source (non-pathogen) and the target (<i>Bacillus anthracis</i>). At this point, the workflow runs a BlastP search to compare the two strains of bacteria. Assessment of the evolutionary relationship between the two genomes ascertains whether they are closely related enough to derive meaningful comparisons. The vaccine finding system then parses the proteins from the data set that are only coded for in the target genome <i>Bacillus anthracis</i>, giving a new data set of unique proteins which can then be assessed in the KEGG PATHWAY database. The position of the unique proteins in the pathways will give a good indication of the enzymatic role of the proteins in <i>Bacillus anthracis</i>. The vaccine finding system then records its findings in an HTML file, as well as additional information such as annotations from Gene Ontology, functional annotations and literature references. 2011-03-31 23:46:02.101 BST The drug repurposing workflow system screens at least 20 bacterial proteomes against this set of proteins that are already being treated against using established drugs. By screening the bacterial proteomes it will be possible to find proteins of highly similar structure to those that are existing drug protein targets and so this will infer that it is highly likely that the drugs can be used as antimicrobials against these proteins of highly similar structure. Proteomes that will be screened belong to Gram positive bacteria, with special focus on <i>Staphylococcus aureus</i>. We look at a variety of species and strains as the company advised. A mixture of screening targets could potentially identify targets for broad-spectrum antimicrobial development. The drug repurposing workflow shows where in the KEGG pathways the proteins are active and therefore where the action of the drug will be in the biochemical pathways of the bacteria. The workflow will update the Ondex database where new information on Gene Ontology annotations, functional annotation and literature references are available. All information about each unique protein is made available in an HTML document. 2011-03-31 22:53:28.880 BST 2b36819c-4f4a-45f2-996c-e02cda810018 2011-03-31 16:41:25.315 BST Vaccine Targets Workflow 2011-03-31 23:46:11.901 BST Parsed UniProt to PubMed results 2011-04-01 12:02:33.659 BST Drug Re-Purposing Workflow 2011-03-31 22:53:13.693 BST