EMBOSS-Matcher Pipeline Workflow

This page contains a number of bioinformatics workflows based on the advanced EMBOSS informatics package. This page describes as Pipeline modules several bioinformatics tools from the EMBOSS suite and demonstrates the construction of a couple of integrated pipeline workflows (end-to-end bioinformatics solutions via the LONI Pipeline).

Matcher finds the best local alignments between two sequences. It can be used to compare two sequences looking for local sequence similarities using a rigorous algorithm. Matcher is based on Bill Pearson's 'lalign' application.

URL: http://www.loni.ucla.edu/twiki/bin/view/CCB/PipelineWorkflows_BioinfoEMBOSS

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