Remove_compression_from_compressed_TIFF_files__Tool_service_version__url_to_textfile_with_image_urls00
URL of a textfile that contains a list of urls serving as the input of this workflow. It contains compressed and uncompressed images.
2011-06-14 10:52:14.951 BST
http://fue.onb.ac.at/tmp/aqua/list.txt
2011-06-13 15:59:21.45 BST
csresult_regex00
.*Group 4 Fax.*
2011-06-14 13:48:32.308 BST
Regular expression for the compression scheme value
2011-06-14 13:49:18.9 BST
2_group_4_fax_compressed_images1_characterisation_result
Characterisation result
2011-06-14 13:56:40.424 BST
3_uncompressed_result_image4_processing_log5_uncompressed_characterisationGet_list_of_imagesinputUrl0list11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.3net.sf.taverna.t2.activities.xpath.XPathActivity
<?xml version="1.0" encoding="UTF-8"?>
<fits xmlns="http://hul.harvard.edu/ois/xml/ns/fits/fits_output" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hul.harvard.edu/ois/xml/ns/fits/fits_output http://hul.harvard.edu/ois/xml/xsd/fits/fits_output.xsd" version="0.5.0" timestamp="13.06.11 16:54">
<identification status="CONFLICT">
<identity format="Tagged Image File Format" mimetype="image/tiff">
<tool toolname="Jhove" toolversion="1.5"/>
<tool toolname="Droid" toolversion="3.0"/>
<tool toolname="file utility" toolversion="4.26"/>
<tool toolname="NLNZ Metadata Extractor" toolversion="3.4GA"/>
<tool toolname="ffident" toolversion="0.2"/>
<version toolname="Jhove" toolversion="1.5" status="CONFLICT">5.0</version>
<version toolname="Droid" toolversion="3.0" status="CONFLICT">3</version>
<version toolname="Droid" toolversion="3.0" status="CONFLICT">4</version>
<version toolname="Droid" toolversion="3.0" status="CONFLICT">6</version>
<externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/7</externalIdentifier>
<externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/8</externalIdentifier>
<externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/9</externalIdentifier>
<externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/10</externalIdentifier>
</identity>
<identity format="TIFF EXIF" mimetype="image/tiff">
<tool toolname="Exiftool" toolversion="7.74"/>
</identity>
</identification>
<fileinfo>
<size toolname="Jhove" toolversion="1.5">146462</size>
<creatingApplicationName toolname="Jhove" toolversion="1.5">SRZ Proscan Book V2.1.44</creatingApplicationName>
<lastmodified toolname="Exiftool" toolversion="7.74" status="SINGLE_RESULT">2011:06:13 16:54:21+02:00</lastmodified>
<filename toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">/usr/local/java/apache-tomcat-6.0.26/temp/fits050-tmp-store/fromurl5856905574101931580.tif</filename>
<md5checksum toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">3f2f48316ed25282f605ca2bcc00a003</md5checksum>
<fslastmodified toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">1307976861000</fslastmodified>
</fileinfo>
<filestatus>
<well-formed toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">true</well-formed>
<valid toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">true</valid>
</filestatus>
<metadata>
<image>
<byteOrder toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">little endian</byteOrder>
<compressionScheme toolname="Jhove" toolversion="1.5">T6/Group 4 Fax</compressionScheme>
<imageWidth toolname="Jhove" toolversion="1.5">2960</imageWidth>
<imageHeight toolname="Jhove" toolversion="1.5">4715</imageHeight>
<colorSpace toolname="Jhove" toolversion="1.5">WhiteIsZero</colorSpace>
<orientation toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">normal*</orientation>
<samplingFrequencyUnit toolname="Jhove" toolversion="1.5">in.</samplingFrequencyUnit>
<xSamplingFrequency toolname="Jhove" toolversion="1.5">400</xSamplingFrequency>
<ySamplingFrequency toolname="Jhove" toolversion="1.5">400</ySamplingFrequency>
<bitsPerSample toolname="Jhove" toolversion="1.5">1</bitsPerSample>
<samplesPerPixel toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">1</samplesPerPixel>
<imageProducer toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">Cambridge University Library</imageProducer>
<scanningSoftwareName toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">SRZ Proscan Book V2.1.44</scanningSoftwareName>
</image>
</metadata>
</fits>
/default:fits/default:metadata/default:image/default:compressionScheme
default
http://hul.harvard.edu/ois/xml/ns/fits/fits_output
xsi
http://www.w3.org/2001/XMLSchema-instance
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
inputlist
2
l(l(''))
[B
true
outputlist
1
l('')
1
workflow
org.embl.ebi.escience.scuflworkers.java.FlattenList
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBeanshelltiff_images_in_list1charactres_in_list1csresult_regex0tiff_images_out_list11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity
tiff_images_in_list
1
text/plain
java.lang.String
true
charactres_in_list
1
text/plain
java.lang.String
true
csresult_regex
0
text/plain
java.lang.String
true
tiff_images_out_list
1
1
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconvertTIFFtoTIFFinput0output00STDERR00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity
default
D0A4CDEB-DD10-4A8E-A49C-8871003083D8
work
<?xml version="1.0" encoding="UTF-8"?>
<sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation>
38fdc85e-9ff0-4c48-b225-f4c78f09d67d
ConvertTIFFtoTIFF
Image Conversion
Removes compression from a TIFF file.
convert input +compress output
1200
1800
input
input
true
false
false
MacRoman
false
false
false
output
output
true
false
true
true
0
false
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFileinput0output00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity
default
D0A4CDEB-DD10-4A8E-A49C-8871003083D8
work
<?xml version="1.0" encoding="UTF-8"?>
<sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation>
7480c87c-baaa-43f9-b6fd-4eb2c9d2ae7d
Characterise File
Characterise a file using the File Information Tool Set (FITS) (http://code.google.com/p/fits/)
fits.sh -i input -o output
1200
1800
input
input
true
false
true
MacRoman
false
false
false
output
output
false
false
true
true
0
false
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_3input0output00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity
default
D0A4CDEB-DD10-4A8E-A49C-8871003083D8
work
<?xml version="1.0" encoding="UTF-8"?>
<sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation>
7480c87c-baaa-43f9-b6fd-4eb2c9d2ae7d
Characterise File
Characterise a file using the File Information Tool Set (FITS) (http://code.google.com/p/fits/)
fits.sh -i input -o output
1200
1800
input
input
true
false
true
MacRoman
false
false
false
output
output
false
false
true
true
0
false
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefetchUrlinputUrl0output00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity
default
D0A4CDEB-DD10-4A8E-A49C-8871003083D8
work
<?xml version="1.0" encoding="UTF-8"?>
<sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation>
61209c74-eba2-481e-9ed0-aac11cc35d30
Fetch URL
Downloads a URL and saves to a file.
wget %%inputUrl%% -O output
1200
1800
inputUrl
inputUrl
inputUrl
false
false
false
MacRoman
false
false
false
output
output
true
false
true
true
0
false
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefetchUrl_2inputUrl0output00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity
default
D0A4CDEB-DD10-4A8E-A49C-8871003083D8
work
<?xml version="1.0" encoding="UTF-8"?>
<sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation>
61209c74-eba2-481e-9ed0-aac11cc35d30
Fetch URL
Downloads a URL and saves to a file.
wget %%inputUrl%% -O output
1200
1800
inputUrl
inputUrl
inputUrl
false
false
false
MacRoman
false
false
false
output
output
true
false
true
true
0
false
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_list_of_imagesinputUrlXPath_Servicexml_textFlatten_ListinputlistBeanshelltiff_images_in_listBeanshellcharactres_in_listBeanshellcsresult_regexconvertTIFFtoTIFFinputcharacteriseFileinputcharacteriseFile_3inputfetchUrlinputUrlfetchUrl_2inputUrl2_group_4_fax_compressed_images1_characterisation_result3_uncompressed_result_image4_processing_log5_uncompressed_characterisation
5347bc26-645d-4e46-a9dd-d196db1c9271
2011-05-24 19:01:48.199 BST
56760ccc-c3ac-4c17-bf64-7bdca9d8d68d
2011-11-29 14:49:27.879 GMT
5e852dee-5735-479c-87e0-795dc9e2c685
2011-06-08 10:50:11.827 BST
ee29adcc-ec1a-40f5-bdf1-f93f8c560753
2011-06-14 13:53:04.976 BST
Sven Schlarb
David Withers
2011-11-29 14:41:44.848 GMT
f83d86a2-37a3-4ac8-8050-36a8ba1b008e
2011-05-24 19:03:09.295 BST
b1bfdb56-f5c7-4073-b2e1-581e3dbb1e4f
2011-05-24 19:11:51.822 BST
c182daa6-20a7-4e2d-9173-361fbcba956b
2011-06-08 10:42:40.698 BST
b2766403-ab64-4c58-8433-4e38d0812a19
2011-06-14 10:52:17.881 BST
a43a502c-f6de-4927-8cbd-7b676c5687a5
2011-05-24 18:59:15.479 BST
9d57aced-0792-4cc5-93c2-ef59694896d9
2011-06-08 10:40:30.735 BST
5b7477df-53a1-45fa-8b61-e133690b783a
2011-05-20 18:19:17.530 BST
e6491f04-30e6-430f-b6d0-213e0ec3b8cd
2011-05-20 18:47:35.880 BST
2babaa95-daab-48fd-8a1e-61bf9a7564d6
2011-05-24 18:58:30.367 BST
8eceae9c-171d-4fee-b995-a0c585b190e5
2011-11-14 14:30:56.953 GMT
502a83ee-2d56-4202-b672-d9e2c8f1dc63
2011-05-24 19:24:39.957 BST
Remove compression from compressed TIFF files (Tool service version).
2011-11-29 14:46:12.253 GMT
6cd82798-ec87-4184-90f0-4976838596db
2011-05-20 18:22:35.730 BST
c530a2b8-a230-4799-97d7-4290eed28b56
2011-06-13 16:07:17.331 BST
9a9675ab-9ab5-4119-8ca0-820166228a42
2011-11-14 14:33:42.133 GMT
52761dd2-f95e-4b2b-8a3d-7a4fb9f29ca4
2011-06-14 16:44:02.560 BST
55d89e61-71a0-4f92-9238-f3a0e2445499
2011-06-14 09:40:57.778 BST
1aeaed9b-0e7e-4012-87d8-1de69bb7f719
2011-06-14 10:46:54.175 BST
742a958f-d36a-4701-b5f5-f97dbd058949
2011-06-14 09:40:47.603 BST
14928323-b9dd-4df1-9b23-220926cffe57
2011-11-14 13:44:07.339 GMT
1408beac-5169-4434-90a3-93c8c0178612
2011-06-14 10:55:00.393 BST
8b0b7415-3f8b-444e-8ca6-e2a3ab442bfc
2011-06-14 09:11:29.531 BST
d8eeab68-d1df-43fd-9ce8-9a29452e3a81
2011-06-08 11:06:10.608 BST
The workflow takes a list of TIFF images as input, identifies the "Group 4 Fax" comressed TIFF images and converts them to uncompressed TIFF images using convert. Finally it characterises the converted image.
This version of the workflow replaces the web services of the original workflow with tool services.
2011-11-29 14:45:54.758 GMT
b6c6a7b6-18dc-41b8-ae8d-91f7b973dfa9
2011-06-14 10:44:44.262 BST
8c6aa67f-cccc-4479-8504-b430e6a21e87
2011-05-24 18:54:49.135 BST
44cb2ccd-a2bb-4af7-9023-be82c454a7af
2011-06-14 13:56:41.626 BST
0384175d-5917-48b9-a2d1-d9b0b07bf8f4
2011-05-24 19:07:37.518 BST
67cfd9b3-1c02-4804-851e-7d20ab9e8ecc
2011-05-20 18:01:29.927 BST
fbeeb7b4-d5a4-4068-9c2a-26a394abe2b5
2011-10-03 10:42:08.581 BST
4b5befbe-7445-4885-afba-99391adebcf8
2011-05-20 18:54:00.855 BST
af20eff3-a496-43be-b399-e25761e9bf64
2011-05-24 19:19:08.557 BST
b8e3e12c-edcd-47c6-a809-7f729670f613
2011-05-24 19:18:20.830 BST
f3348811-d253-48e8-a843-c7b3dbdbf364
2011-06-14 10:20:02.572 BST
d92861f6-60fb-49c2-b0e5-53a5a82b0c33
2011-10-20 16:39:40.975 BST
6d761be3-2598-4f02-a55c-47ca6ed2b28d
2011-05-20 18:16:55.194 BST
8ca7fc2f-ad35-4cf1-821a-0819a34eda0d
2011-05-24 19:05:44.382 BST
61c38721-268a-4112-8091-1b434efd0828
2011-05-20 20:21:10.589 BST
263dc828-87c6-4271-8b05-dd06b3abfc3b
2011-05-20 18:19:57.722 BST
6683fbfd-cb69-49d6-a969-861b65e69fb4
2011-05-20 18:45:26.56 BST
73429999-7ce3-4c5e-a71b-3b8aee6f8693
2011-11-14 18:03:13.704 GMT
cef06a3d-6e6b-448c-9175-3421bc552440
2011-05-24 19:09:20.230 BST
bb2d377d-c2b0-4c56-a24d-07779268711d
2011-05-24 18:57:28.326 BST
f12ff27c-9eaa-4505-99c4-259bcea008fc
2011-06-14 13:52:25.452 BST
6ceb291e-e640-4b1b-b8d9-3d13356e48bc
2011-06-14 13:56:25.317 BST
6aa27f1c-27bc-40fe-8f26-3ba127305c1e
2011-05-24 19:42:58.715 BST
d34b08c7-65e2-463a-8a10-963cb43c3417
2011-05-20 18:12:19.780 BST
fd676fe3-5795-4e98-9e83-3ff98366f885
2011-05-20 18:46:33.32 BST
339e6600-5720-471e-b5cb-8073328e116d
2011-06-13 13:34:21.72 BST
053a6241-c703-4a1b-ae52-f3d2c7813589
2011-06-08 11:09:19.625 BST
414c4034-c801-4f9c-b1b5-ae04defc983c
2011-05-20 18:27:24.353 BST
20efa529-a6e1-4bad-b02d-c8a9e5030dfa
2011-11-14 14:29:16.346 GMT
bd857da1-aee2-4d6c-abb5-ae0db279873b
2011-05-20 18:06:56.434 BST
58d2897d-6e81-457c-9efc-f75ed27d290f
2011-05-20 18:13:55.2 BST
986df3df-dc30-420f-be8b-901642259dc5
2011-06-14 13:49:51.858 BST
5e20a2ce-96f8-4cc7-bb3e-fa8bf870024c
2011-11-14 15:05:29.870 GMT
670cc62b-be83-4332-bd17-f3121a8946fd
2011-05-20 18:24:20.754 BST
a2b6e9f7-440c-4032-bdb9-807e6bfb515b
2011-05-20 18:42:20.163 BST
4781657a-2148-43b3-86f8-0e1692169aa6
2011-05-20 18:46:19.288 BST
9393e120-9359-4db8-8bca-fbedd857be2e
2011-05-24 19:27:07.349 BST
40b3aaf0-7846-495e-9527-ef6166b01cc7
2011-11-14 13:50:18.904 GMT
dc5c6bc1-fc5c-4480-bf71-b0f20c030b78
2011-06-14 09:43:57.718 BST
acfbe5e2-30f4-4a20-b464-4f9e7aacd0fe
2011-06-08 10:49:26.418 BST
590d33da-4b4f-43bd-b80f-653ff515acb2
2011-06-14 10:17:05.740 BST
4fbba9a3-72e2-4b4f-97c6-021d66d04518
2011-11-14 18:22:05.611 GMT
38004f79-4752-4ed3-b193-2ee8145b320b
2011-06-08 11:09:42.493 BST
870f91ba-c7c8-4a06-b57f-2c0471a87a52
2011-05-20 18:34:52.313 BST
94dc91a1-56c7-4fc1-a152-c2c8f537a4a8
2011-05-20 18:15:10.274 BST
a82b096a-deea-43e4-92c2-f11897cfe3e3
2011-06-13 13:31:03.884 BST
34b2e51d-9627-43f8-90d6-dfec69ab6fec
2011-05-20 18:23:43.34 BST
e715c5a8-3b1e-4f60-871c-02b2db0b8787
2011-11-29 14:38:37.676 GMT
4cce8465-0fc2-44e2-830f-b5f38b1d6036
2011-11-14 15:03:24.674 GMT
05014386-cfca-49c8-9f32-04fbf6becdbc
2011-05-20 18:03:54.539 BST
9dbfec2f-b0c4-4a13-a74e-38db19981461
2011-05-20 18:44:45.912 BST
bc40b370-a673-4e85-a55f-77a27d3092d6
2011-06-08 11:03:48.600 BST
21aac78a-dfcd-45fd-ac7c-584e60160268
2011-11-29 14:46:30.182 GMT
ebd73727-fd5b-43fc-9745-5df8ffd5124a
2011-05-20 18:22:06.938 BST
2c05e055-502f-498e-922d-b03c0de6ba6e
2011-05-20 18:29:29.153 BST
74def5f8-3e6b-47b6-98c5-30e05fc7765b
2011-11-14 14:27:00.205 GMT
bda49262-0b32-47ab-bce1-eed86f14855a
2011-06-14 10:41:32.830 BST
735faf55-ba64-4233-9575-754c0d1a8f38
2011-05-20 18:05:34.475 BST
5d4608e7-25bd-4a3c-bcf9-d769f308cbe8
2011-05-20 18:18:58.90 BST
05d20443-c75c-41b3-82f0-a8c9842b0c3a
2011-11-14 14:24:46.567 GMT
65c2b74e-30cb-4b9f-bae1-cb5665b7dace
2011-05-20 20:25:07.4 BST
b8814a5c-878a-4535-bc28-8fa5ca68e877
2011-05-20 18:21:14.650 BST
d9f629b0-9130-4763-ba45-e397a5f24a91
2011-06-13 16:05:56.421 BST
959ba3c2-3d9f-4b10-9d8c-f88fb0f4ccc9
2011-06-13 13:36:24.68 BST
dc1d6910-9820-41ef-b473-083f9b64cfed
2011-11-14 14:38:33.375 GMT
c448ac22-cf14-43cc-8918-4f8ec5cd2cbf
2011-06-13 15:59:39.929 BST
7af32d26-7945-4f16-9f03-76541f23aaf3
2011-05-20 18:04:53.635 BST
3c42b026-1009-4f42-a4c3-632e8b3ce888
2011-11-14 18:23:54.340 GMT
e2b7d3d1-8790-44c1-b2d5-b9af9144c031
2011-11-14 14:10:48.352 GMT
29726383-9d41-4520-816c-a1f14c703485
2011-06-14 09:53:32.263 BST
64fd0adc-a20f-4f29-a15a-292e12d75dd7
2011-05-24 18:54:02.188 BST
7000fc77-52a8-42fe-a745-82a708e6cf47
2011-05-20 19:04:15.462 BST
e6e83a58-c482-43b3-b9f2-f6e5b6db19c4
2011-06-14 10:27:18.716 BST
952fb021-f9cb-4c0e-aa6e-d490a0030803
2011-06-14 09:49:10.500 BST
IMPACT_URL_to_ListinputUrl00
http://fue.onb.ac.at/impact/testdata/5_URLs_from_PRIMA_PAGE-XML_files.txt
2011-02-04 00:27:13.895 GMT
URL to a list with references to either images or ground truth files from the PRImA database. Typically this is the tinyurl obtained by using the download option of the shopping cart mechanism.
2011-02-17 23:10:03.214 GMT
listURL2Liststring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
split
1
1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2010-09-03 12:44:07.151 BST
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokereadFilefileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
fileurl
0
'text/plain'
java.lang.String
true
filecontents
0
'text/plain'
0
workflow
net.sourceforge.taverna.scuflworkers.io.TextFileReader
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeURL2ListstringURL2ListregexreadFilefileurllist
IMPACT
2011-02-02 21:06:53.669 GMT
8e9da86b-cddc-4bdf-8a27-cdfc3e4391f0
2010-07-21 14:22:26.863 BST
IMPACT URL to List
2011-02-17 23:10:24.685 GMT
4fa5dc6c-f4a1-491b-a3af-084aa98e1621
2011-02-02 21:13:51.528 GMT
fef6695d-e68d-4387-8ba2-aeb6ea049d1c
2010-07-21 14:22:56.298 BST
e38d16b8-698b-4892-bf62-52f2466faea8
2010-09-03 12:44:44.53 BST
db5e468a-1ace-4b71-a928-cc90ea1563e4
2011-02-02 21:13:34.393 GMT
364a2fa1-7f73-46c1-abe3-1078823b4a71
2011-02-17 23:11:38.511 GMT
f7c1877e-4817-4fdc-9001-5822f9797cb4
2011-02-04 00:27:14.65 GMT
Read a URL with references to files and convert them into a list suitable for processing with Taverna.
2011-02-17 23:10:58.415 GMT
e06b2577-f49c-4dfb-bc2e-c142d6b949df
2010-09-06 10:01:30.551 BST
ebb7de4f-434e-4aaf-8ae1-25bf54ebd2e8
2011-02-02 21:12:51.357 GMT