Remove_compression_from_compressed_TIFF_files__Tool_service_version__url_to_textfile_with_image_urls00 URL of a textfile that contains a list of urls serving as the input of this workflow. It contains compressed and uncompressed images. 2011-06-14 10:52:14.951 BST http://fue.onb.ac.at/tmp/aqua/list.txt 2011-06-13 15:59:21.45 BST csresult_regex00 .*Group 4 Fax.* 2011-06-14 13:48:32.308 BST Regular expression for the compression scheme value 2011-06-14 13:49:18.9 BST 2_group_4_fax_compressed_images1_characterisation_result Characterisation result 2011-06-14 13:56:40.424 BST 3_uncompressed_result_image4_processing_log5_uncompressed_characterisationGet_list_of_imagesinputUrl0list11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.3net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <fits xmlns="http://hul.harvard.edu/ois/xml/ns/fits/fits_output" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://hul.harvard.edu/ois/xml/ns/fits/fits_output http://hul.harvard.edu/ois/xml/xsd/fits/fits_output.xsd" version="0.5.0" timestamp="13.06.11 16:54"> <identification status="CONFLICT"> <identity format="Tagged Image File Format" mimetype="image/tiff"> <tool toolname="Jhove" toolversion="1.5"/> <tool toolname="Droid" toolversion="3.0"/> <tool toolname="file utility" toolversion="4.26"/> <tool toolname="NLNZ Metadata Extractor" toolversion="3.4GA"/> <tool toolname="ffident" toolversion="0.2"/> <version toolname="Jhove" toolversion="1.5" status="CONFLICT">5.0</version> <version toolname="Droid" toolversion="3.0" status="CONFLICT">3</version> <version toolname="Droid" toolversion="3.0" status="CONFLICT">4</version> <version toolname="Droid" toolversion="3.0" status="CONFLICT">6</version> <externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/7</externalIdentifier> <externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/8</externalIdentifier> <externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/9</externalIdentifier> <externalIdentifier toolname="Droid" toolversion="3.0" type="puid">fmt/10</externalIdentifier> </identity> <identity format="TIFF EXIF" mimetype="image/tiff"> <tool toolname="Exiftool" toolversion="7.74"/> </identity> </identification> <fileinfo> <size toolname="Jhove" toolversion="1.5">146462</size> <creatingApplicationName toolname="Jhove" toolversion="1.5">SRZ Proscan Book V2.1.44</creatingApplicationName> <lastmodified toolname="Exiftool" toolversion="7.74" status="SINGLE_RESULT">2011:06:13 16:54:21+02:00</lastmodified> <filename toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">/usr/local/java/apache-tomcat-6.0.26/temp/fits050-tmp-store/fromurl5856905574101931580.tif</filename> <md5checksum toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">3f2f48316ed25282f605ca2bcc00a003</md5checksum> <fslastmodified toolname="OIS File Information" toolversion="0.1" status="SINGLE_RESULT">1307976861000</fslastmodified> </fileinfo> <filestatus> <well-formed toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">true</well-formed> <valid toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">true</valid> </filestatus> <metadata> <image> <byteOrder toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">little endian</byteOrder> <compressionScheme toolname="Jhove" toolversion="1.5">T6/Group 4 Fax</compressionScheme> <imageWidth toolname="Jhove" toolversion="1.5">2960</imageWidth> <imageHeight toolname="Jhove" toolversion="1.5">4715</imageHeight> <colorSpace toolname="Jhove" toolversion="1.5">WhiteIsZero</colorSpace> <orientation toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">normal*</orientation> <samplingFrequencyUnit toolname="Jhove" toolversion="1.5">in.</samplingFrequencyUnit> <xSamplingFrequency toolname="Jhove" toolversion="1.5">400</xSamplingFrequency> <ySamplingFrequency toolname="Jhove" toolversion="1.5">400</ySamplingFrequency> <bitsPerSample toolname="Jhove" toolversion="1.5">1</bitsPerSample> <samplesPerPixel toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">1</samplesPerPixel> <imageProducer toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">Cambridge University Library</imageProducer> <scanningSoftwareName toolname="Jhove" toolversion="1.5" status="SINGLE_RESULT">SRZ Proscan Book V2.1.44</scanningSoftwareName> </image> </metadata> </fits> /default:fits/default:metadata/default:image/default:compressionScheme default http://hul.harvard.edu/ois/xml/ns/fits/fits_output xsi http://www.w3.org/2001/XMLSchema-instance net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBeanshelltiff_images_in_list1charactres_in_list1csresult_regex0tiff_images_out_list11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity tiff_images_in_list 1 text/plain java.lang.String true charactres_in_list 1 text/plain java.lang.String true csresult_regex 0 text/plain java.lang.String true tiff_images_out_list 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeconvertTIFFtoTIFFinput0output00STDERR00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity default D0A4CDEB-DD10-4A8E-A49C-8871003083D8 work <?xml version="1.0" encoding="UTF-8"?> <sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation> 38fdc85e-9ff0-4c48-b225-f4c78f09d67d ConvertTIFFtoTIFF Image Conversion Removes compression from a TIFF file. convert input +compress output 1200 1800 input input true false false MacRoman false false false output output true false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFileinput0output00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity default D0A4CDEB-DD10-4A8E-A49C-8871003083D8 work <?xml version="1.0" encoding="UTF-8"?> <sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation> 7480c87c-baaa-43f9-b6fd-4eb2c9d2ae7d Characterise File Characterise a file using the File Information Tool Set (FITS) (http://code.google.com/p/fits/) fits.sh -i input -o output 1200 1800 input input true false true MacRoman false false false output output false false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecharacteriseFile_3input0output00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity default D0A4CDEB-DD10-4A8E-A49C-8871003083D8 work <?xml version="1.0" encoding="UTF-8"?> <sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation> 7480c87c-baaa-43f9-b6fd-4eb2c9d2ae7d Characterise File Characterise a file using the File Information Tool Set (FITS) (http://code.google.com/p/fits/) fits.sh -i input -o output 1200 1800 input input true false true MacRoman false false false output output false false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefetchUrlinputUrl0output00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity default D0A4CDEB-DD10-4A8E-A49C-8871003083D8 work <?xml version="1.0" encoding="UTF-8"?> <sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation> 61209c74-eba2-481e-9ed0-aac11cc35d30 Fetch URL Downloads a URL and saves to a file. wget %%inputUrl%% -O output 1200 1800 inputUrl inputUrl inputUrl false false false MacRoman false false false output output true false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefetchUrl_2inputUrl0output00net.sf.taverna.t2.activitiesexternal-tool-activity1.3net.sf.taverna.t2.activities.externaltool.ExternalToolActivity default D0A4CDEB-DD10-4A8E-A49C-8871003083D8 work <?xml version="1.0" encoding="UTF-8"?> <sshInvocation><sshNode><host>rpc269.cs.man.ac.uk</host><port>22</port><directory>/tmp/</directory><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand><copyCommand>/bin/cp %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</copyCommand></sshNode></sshInvocation> 61209c74-eba2-481e-9ed0-aac11cc35d30 Fetch URL Downloads a URL and saves to a file. wget %%inputUrl%% -O output 1200 1800 inputUrl inputUrl inputUrl false false false MacRoman false false false output output true false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_list_of_imagesinputUrlurl_to_textfile_with_image_urlsXPath_Servicexml_textcharacteriseFile_3outputFlatten_ListinputlistXPath_ServicenodelistBeanshelltiff_images_in_listGet_list_of_imageslistBeanshellcharactres_in_listFlatten_ListoutputlistBeanshellcsresult_regexcsresult_regexconvertTIFFtoTIFFinputfetchUrl_2outputcharacteriseFileinputconvertTIFFtoTIFFoutputcharacteriseFile_3inputfetchUrloutputfetchUrlinputUrlGet_list_of_imageslistfetchUrl_2inputUrlBeanshelltiff_images_out_list2_group_4_fax_compressed_imagesBeanshelltiff_images_out_list1_characterisation_resultFlatten_Listoutputlist3_uncompressed_result_imageconvertTIFFtoTIFFoutput4_processing_logconvertTIFFtoTIFFSTDERR5_uncompressed_characterisationcharacteriseFileoutput 5347bc26-645d-4e46-a9dd-d196db1c9271 2011-05-24 19:01:48.199 BST 56760ccc-c3ac-4c17-bf64-7bdca9d8d68d 2011-11-29 14:49:27.879 GMT 5e852dee-5735-479c-87e0-795dc9e2c685 2011-06-08 10:50:11.827 BST ee29adcc-ec1a-40f5-bdf1-f93f8c560753 2011-06-14 13:53:04.976 BST Sven Schlarb David Withers 2011-11-29 14:41:44.848 GMT f83d86a2-37a3-4ac8-8050-36a8ba1b008e 2011-05-24 19:03:09.295 BST b1bfdb56-f5c7-4073-b2e1-581e3dbb1e4f 2011-05-24 19:11:51.822 BST c182daa6-20a7-4e2d-9173-361fbcba956b 2011-06-08 10:42:40.698 BST b2766403-ab64-4c58-8433-4e38d0812a19 2011-06-14 10:52:17.881 BST a43a502c-f6de-4927-8cbd-7b676c5687a5 2011-05-24 18:59:15.479 BST 9d57aced-0792-4cc5-93c2-ef59694896d9 2011-06-08 10:40:30.735 BST 5b7477df-53a1-45fa-8b61-e133690b783a 2011-05-20 18:19:17.530 BST e6491f04-30e6-430f-b6d0-213e0ec3b8cd 2011-05-20 18:47:35.880 BST 2babaa95-daab-48fd-8a1e-61bf9a7564d6 2011-05-24 18:58:30.367 BST 8eceae9c-171d-4fee-b995-a0c585b190e5 2011-11-14 14:30:56.953 GMT 502a83ee-2d56-4202-b672-d9e2c8f1dc63 2011-05-24 19:24:39.957 BST Remove compression from compressed TIFF files (Tool service version). 2011-11-29 14:46:12.253 GMT 6cd82798-ec87-4184-90f0-4976838596db 2011-05-20 18:22:35.730 BST c530a2b8-a230-4799-97d7-4290eed28b56 2011-06-13 16:07:17.331 BST 9a9675ab-9ab5-4119-8ca0-820166228a42 2011-11-14 14:33:42.133 GMT 52761dd2-f95e-4b2b-8a3d-7a4fb9f29ca4 2011-06-14 16:44:02.560 BST 55d89e61-71a0-4f92-9238-f3a0e2445499 2011-06-14 09:40:57.778 BST 1aeaed9b-0e7e-4012-87d8-1de69bb7f719 2011-06-14 10:46:54.175 BST 742a958f-d36a-4701-b5f5-f97dbd058949 2011-06-14 09:40:47.603 BST 14928323-b9dd-4df1-9b23-220926cffe57 2011-11-14 13:44:07.339 GMT 1408beac-5169-4434-90a3-93c8c0178612 2011-06-14 10:55:00.393 BST 8b0b7415-3f8b-444e-8ca6-e2a3ab442bfc 2011-06-14 09:11:29.531 BST d8eeab68-d1df-43fd-9ce8-9a29452e3a81 2011-06-08 11:06:10.608 BST The workflow takes a list of TIFF images as input, identifies the "Group 4 Fax" comressed TIFF images and converts them to uncompressed TIFF images using convert. Finally it characterises the converted image. This version of the workflow replaces the web services of the original workflow with tool services. 2011-11-29 14:45:54.758 GMT b6c6a7b6-18dc-41b8-ae8d-91f7b973dfa9 2011-06-14 10:44:44.262 BST 8c6aa67f-cccc-4479-8504-b430e6a21e87 2011-05-24 18:54:49.135 BST 44cb2ccd-a2bb-4af7-9023-be82c454a7af 2011-06-14 13:56:41.626 BST 0384175d-5917-48b9-a2d1-d9b0b07bf8f4 2011-05-24 19:07:37.518 BST 67cfd9b3-1c02-4804-851e-7d20ab9e8ecc 2011-05-20 18:01:29.927 BST fbeeb7b4-d5a4-4068-9c2a-26a394abe2b5 2011-10-03 10:42:08.581 BST 4b5befbe-7445-4885-afba-99391adebcf8 2011-05-20 18:54:00.855 BST af20eff3-a496-43be-b399-e25761e9bf64 2011-05-24 19:19:08.557 BST b8e3e12c-edcd-47c6-a809-7f729670f613 2011-05-24 19:18:20.830 BST f3348811-d253-48e8-a843-c7b3dbdbf364 2011-06-14 10:20:02.572 BST d92861f6-60fb-49c2-b0e5-53a5a82b0c33 2011-10-20 16:39:40.975 BST 6d761be3-2598-4f02-a55c-47ca6ed2b28d 2011-05-20 18:16:55.194 BST 8ca7fc2f-ad35-4cf1-821a-0819a34eda0d 2011-05-24 19:05:44.382 BST 61c38721-268a-4112-8091-1b434efd0828 2011-05-20 20:21:10.589 BST 263dc828-87c6-4271-8b05-dd06b3abfc3b 2011-05-20 18:19:57.722 BST 6683fbfd-cb69-49d6-a969-861b65e69fb4 2011-05-20 18:45:26.56 BST 73429999-7ce3-4c5e-a71b-3b8aee6f8693 2011-11-14 18:03:13.704 GMT cef06a3d-6e6b-448c-9175-3421bc552440 2011-05-24 19:09:20.230 BST bb2d377d-c2b0-4c56-a24d-07779268711d 2011-05-24 18:57:28.326 BST f12ff27c-9eaa-4505-99c4-259bcea008fc 2011-06-14 13:52:25.452 BST 6ceb291e-e640-4b1b-b8d9-3d13356e48bc 2011-06-14 13:56:25.317 BST 6aa27f1c-27bc-40fe-8f26-3ba127305c1e 2011-05-24 19:42:58.715 BST d34b08c7-65e2-463a-8a10-963cb43c3417 2011-05-20 18:12:19.780 BST fd676fe3-5795-4e98-9e83-3ff98366f885 2011-05-20 18:46:33.32 BST 339e6600-5720-471e-b5cb-8073328e116d 2011-06-13 13:34:21.72 BST 053a6241-c703-4a1b-ae52-f3d2c7813589 2011-06-08 11:09:19.625 BST 414c4034-c801-4f9c-b1b5-ae04defc983c 2011-05-20 18:27:24.353 BST 20efa529-a6e1-4bad-b02d-c8a9e5030dfa 2011-11-14 14:29:16.346 GMT bd857da1-aee2-4d6c-abb5-ae0db279873b 2011-05-20 18:06:56.434 BST 58d2897d-6e81-457c-9efc-f75ed27d290f 2011-05-20 18:13:55.2 BST 986df3df-dc30-420f-be8b-901642259dc5 2011-06-14 13:49:51.858 BST 5e20a2ce-96f8-4cc7-bb3e-fa8bf870024c 2011-11-14 15:05:29.870 GMT 670cc62b-be83-4332-bd17-f3121a8946fd 2011-05-20 18:24:20.754 BST a2b6e9f7-440c-4032-bdb9-807e6bfb515b 2011-05-20 18:42:20.163 BST 4781657a-2148-43b3-86f8-0e1692169aa6 2011-05-20 18:46:19.288 BST 9393e120-9359-4db8-8bca-fbedd857be2e 2011-05-24 19:27:07.349 BST 40b3aaf0-7846-495e-9527-ef6166b01cc7 2011-11-14 13:50:18.904 GMT dc5c6bc1-fc5c-4480-bf71-b0f20c030b78 2011-06-14 09:43:57.718 BST acfbe5e2-30f4-4a20-b464-4f9e7aacd0fe 2011-06-08 10:49:26.418 BST 590d33da-4b4f-43bd-b80f-653ff515acb2 2011-06-14 10:17:05.740 BST 4fbba9a3-72e2-4b4f-97c6-021d66d04518 2011-11-14 18:22:05.611 GMT 38004f79-4752-4ed3-b193-2ee8145b320b 2011-06-08 11:09:42.493 BST 870f91ba-c7c8-4a06-b57f-2c0471a87a52 2011-05-20 18:34:52.313 BST 94dc91a1-56c7-4fc1-a152-c2c8f537a4a8 2011-05-20 18:15:10.274 BST a82b096a-deea-43e4-92c2-f11897cfe3e3 2011-06-13 13:31:03.884 BST 34b2e51d-9627-43f8-90d6-dfec69ab6fec 2011-05-20 18:23:43.34 BST e715c5a8-3b1e-4f60-871c-02b2db0b8787 2011-11-29 14:38:37.676 GMT 4cce8465-0fc2-44e2-830f-b5f38b1d6036 2011-11-14 15:03:24.674 GMT 05014386-cfca-49c8-9f32-04fbf6becdbc 2011-05-20 18:03:54.539 BST 9dbfec2f-b0c4-4a13-a74e-38db19981461 2011-05-20 18:44:45.912 BST bc40b370-a673-4e85-a55f-77a27d3092d6 2011-06-08 11:03:48.600 BST 21aac78a-dfcd-45fd-ac7c-584e60160268 2011-11-29 14:46:30.182 GMT ebd73727-fd5b-43fc-9745-5df8ffd5124a 2011-05-20 18:22:06.938 BST 2c05e055-502f-498e-922d-b03c0de6ba6e 2011-05-20 18:29:29.153 BST 74def5f8-3e6b-47b6-98c5-30e05fc7765b 2011-11-14 14:27:00.205 GMT bda49262-0b32-47ab-bce1-eed86f14855a 2011-06-14 10:41:32.830 BST 735faf55-ba64-4233-9575-754c0d1a8f38 2011-05-20 18:05:34.475 BST 5d4608e7-25bd-4a3c-bcf9-d769f308cbe8 2011-05-20 18:18:58.90 BST 05d20443-c75c-41b3-82f0-a8c9842b0c3a 2011-11-14 14:24:46.567 GMT 65c2b74e-30cb-4b9f-bae1-cb5665b7dace 2011-05-20 20:25:07.4 BST b8814a5c-878a-4535-bc28-8fa5ca68e877 2011-05-20 18:21:14.650 BST d9f629b0-9130-4763-ba45-e397a5f24a91 2011-06-13 16:05:56.421 BST 959ba3c2-3d9f-4b10-9d8c-f88fb0f4ccc9 2011-06-13 13:36:24.68 BST dc1d6910-9820-41ef-b473-083f9b64cfed 2011-11-14 14:38:33.375 GMT c448ac22-cf14-43cc-8918-4f8ec5cd2cbf 2011-06-13 15:59:39.929 BST 7af32d26-7945-4f16-9f03-76541f23aaf3 2011-05-20 18:04:53.635 BST 3c42b026-1009-4f42-a4c3-632e8b3ce888 2011-11-14 18:23:54.340 GMT e2b7d3d1-8790-44c1-b2d5-b9af9144c031 2011-11-14 14:10:48.352 GMT 29726383-9d41-4520-816c-a1f14c703485 2011-06-14 09:53:32.263 BST 64fd0adc-a20f-4f29-a15a-292e12d75dd7 2011-05-24 18:54:02.188 BST 7000fc77-52a8-42fe-a745-82a708e6cf47 2011-05-20 19:04:15.462 BST e6e83a58-c482-43b3-b9f2-f6e5b6db19c4 2011-06-14 10:27:18.716 BST 952fb021-f9cb-4c0e-aa6e-d490a0030803 2011-06-14 09:49:10.500 BST IMPACT_URL_to_ListinputUrl00 http://fue.onb.ac.at/impact/testdata/5_URLs_from_PRIMA_PAGE-XML_files.txt 2011-02-04 00:27:13.895 GMT URL to a list with references to either images or ground truth files from the PRImA database. Typically this is the tinyurl obtained by using the download option of the shopping cart mechanism. 2011-02-17 23:10:03.214 GMT listURL2Liststring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2010-09-03 12:44:07.151 BST net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokereadFilefileurl0filecontents00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity fileurl 0 'text/plain' java.lang.String true filecontents 0 'text/plain' 0 workflow net.sourceforge.taverna.scuflworkers.io.TextFileReader net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregexvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeURL2ListstringreadFilefilecontentsURL2ListregexregexvaluereadFilefileurlinputUrllistURL2Listsplit IMPACT 2011-02-02 21:06:53.669 GMT 8e9da86b-cddc-4bdf-8a27-cdfc3e4391f0 2010-07-21 14:22:26.863 BST IMPACT URL to List 2011-02-17 23:10:24.685 GMT 4fa5dc6c-f4a1-491b-a3af-084aa98e1621 2011-02-02 21:13:51.528 GMT fef6695d-e68d-4387-8ba2-aeb6ea049d1c 2010-07-21 14:22:56.298 BST e38d16b8-698b-4892-bf62-52f2466faea8 2010-09-03 12:44:44.53 BST db5e468a-1ace-4b71-a928-cc90ea1563e4 2011-02-02 21:13:34.393 GMT 364a2fa1-7f73-46c1-abe3-1078823b4a71 2011-02-17 23:11:38.511 GMT f7c1877e-4817-4fdc-9001-5822f9797cb4 2011-02-04 00:27:14.65 GMT Read a URL with references to files and convert them into a list suitable for processing with Taverna. 2011-02-17 23:10:58.415 GMT e06b2577-f49c-4dfb-bc2e-c142d6b949df 2010-09-06 10:01:30.551 BST ebb7de4f-434e-4aaf-8ae1-25bf54ebd2e8 2011-02-02 21:12:51.357 GMT