getUPIForSequence workflow

Created: 2008-06-06 09:59:59 Last updated: 2008-06-06 10:07:06

Given a sequence retrieve the UPI (UniProt Archive (UniParc)) identifier.

Preview

Download as scalable diagram (SVG)

Run

You do not have permission to run this workflow

Workflow Components

You do not have permission to see the internals of this workflow

Information Workflow Type

Taverna 1

Information Uploader

Franck Tanoh

Information License

All versions of this Workflow are licensed under:

Information Version 2 (latest) (of 2)

Information Credits (1)

(People/Groups)

Franck Tanoh

Information Attributions (0)

(Workflows/Files)

None

Information Tags (1)

Uploader tags

Log in to add Tags

Information Shared with Groups (0)

None

Information Featured In Packs (0)

None

Log in to add to one of your Packs

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

Information Statistics

1410 viewings

0 downloads

[ see breakdown ]

Citations (0)

None

Version History

In chronological order:

picr workflow

Created by Franck Tanoh on Friday 06 June 2008 09:59:59 (UTC)
getUPIForSequence workflow

Created by Franck Tanoh on Friday 06 June 2008 09:59:59 (UTC)

Last edited by Franck Tanoh on Friday 06 June 2008 10:07:06 (UTC)

Revision comment:

Reviews (0)

No reviews yet

Be the first to review!

Comments (0)

View Timeline

No comments yet

Log in to make a comment

Other workflows that use similar services (9)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 2

Uploader

Rafael C. Jimenez

EBI PICR, find cross-references for protei... (2)

Download

Find cross-references (based on 100% sequence identity) for protein accessions from more than 95 distinct databases. For instance input a list of IPI accessions and find cross-references for Swissprot and Ensembl. Mappings can be limited by source database, taxonomic ID and activity status.

Created: 2011-05-18 | Last updated: 2011-05-29

Credits: Rafael C. Jimenez

Taverna 1

Uploader

Hamish McWilliam

EBI_PICR_Sequence_to_UniParc_and_InterPro (2)

Download

Given a protein sequence get some information about it: Does this protein sequence occur in any of the protein databases (e.g. UniProtKB, PDB, etc.). Using the PICR web service (see http://www.ebi.ac.uk/Tools/picr/) map the sequence to a UniParc identifer. Which entries in the protein databases have this sequence. Using the UniParc database (see http://www.ebi.ac.uk/uniprot/database/DBDescription.html#uniparc) a summary of the databases and the entries in those databases which have this s...

Created: 2008-06-08 | Last updated: 2008-06-08

Credits: Hamish McWilliam

Attributions: EBI_dbfetch_UniParc EBI_Fetch_InterPro_Matches_UniParc EBI_PICR_Sequence_to_ID