Workflow Entry: BLAST using DDBJ service

Created at: 03/10/07 @ 18:36:06      Last updated: 03/12/09 @ 16:31:20
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Version created on: 03/10/07 @ 18:36:06 by: Paul Fisher

Title: BLAST using DDBJ service

Type: Taverna 1


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Information Description

Perform a sequence similarity search using the BLAsT algorithm through the DDBJ web service


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Information Workflow Type

Taverna 1

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Information Ratings (2)

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  • Saturday 21 August 2010 @ 11:25:27 (UTC)
    this%20is%20my%20comment



Workflow Other workflows that use similar services (50)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Original Uploader

Workflow BLASTP with simplified results returned (2)

Created: 03/10/07 @ 18:36:06 | Last updated: 03/12/09 @ 16:28:50

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.   Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSV...

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 373 times | Downloaded: 129 times

Tags (6):

Original Uploader

Workflow Gene annotation pipeline for the Graves di... (2)

Created: 03/10/07 @ 18:36:09 | Last updated: 22/11/07 @ 16:03:15

Credits: User Katy Wolstencroft User Peter Li

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

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This is a revised workflow for the Graves disease scenario gene annotation pipeline used in the myGrid project. The workflow had to be re-written due to the loss of the services invoked in the original workflow.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 694 times | Downloaded: 245 times

Tags (6):

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Non-Information Resource URI: http://www.myexperiment.org/workflows/23/versions/1


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