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BLAST using DDBJ service

Workflow Entry: BLAST using DDBJ service

Created at: 03/10/07 @ 18:36:06 Last updated: 03/12/09 @ 16:31:20

Version 2 (latest) (of 2)

Version created on: 03/10/07 @ 18:36:06 by: Paul Fisher

Last edited on: 03/12/09 @ 16:31:21 by: Paul Fisher

Title: BLAST using DDBJ service

Type: Taverna 1

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Description

Perform a sequence similarity search using the BLAST algorithm through the DDBJ web service.

Example input for this service are given below.

query:

>MySequence

program:

blastp

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Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/23/download?version=2
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Workflow Components

Inputs (3)

Name	Description
program
database
query_seq

Processors (1)

Name	Type	Description
blast_ddbj	arbitrarywsdl	Execute Blast See the Service entry for this web service.

Beanshells (0)

Outputs (1)

Name	Description
text_blast_out

Links (4)

Source	Sink
database	blast_ddbj:database
program	blast_ddbj:program
query_seq	blast_ddbj:query
blast_ddbj:Result	text_blast_out

Coordinations (0)

Information Workflow Type

Taverna 1

Information Original Uploader

Paul Fisher

Information License

All versions of this Workflow are licensed under:

Information Credits (0)

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None

Information Attributions (0)

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Information Tags (5)

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Information Shared with Groups (0)

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Information Featured In Packs (0)

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Information Ratings (2)

Current:

4.5 / 5

(2 ratings)

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Information Attributed By (6)

(Workflows/Files)

Information Favourited By (0)

No one

Information Statistics

2610 viewings

2248 downloads

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Citations (0)

None

Version History

In chronological order:

BLAST using DDBJ service

Created by Paul Fisher on Wednesday 03 October 2007 @ 18:36:06 (UTC)
BLAST using DDBJ service

Created by Paul Fisher on Wednesday 03 October 2007 @ 18:36:06 (UTC)

Last edited by Paul Fisher on Thursday 03 December 2009 @ 16:31:21 (UTC)

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Liyinji	Saturday 21 August 2010 @ 11:25:27 (UTC)
	this%20is%20my%20comment

Other workflows that use similar services (50)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.

Taverna 1

Original Uploader

Paul Fisher

View

Download (v2)

BLASTP with simplified results returned (2)

Created: 03/10/07 @ 18:36:06 | Last updated: 03/12/09 @ 16:28:50

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output. Example input for this service are given below. query: >MySequence MATDDSIIVLDDDDEDEAAAQPGPSNLPPNPASTGPGPGLSQQATGLSEPRVDGGSS NSGSRKCYKLDNEKLFEEFLELCKTETSDHPEVVPFLHKLQQRAQSV...

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 357 times | Downloaded: 124 times

Tags (6):

Taverna 1

Original Uploader

Katy Wolstencroft

View

Download (v2)

Gene annotation pipeline for the Graves di... (2)

Created: 03/10/07 @ 18:36:09 | Last updated: 22/11/07 @ 16:03:15

Credits: Katy Wolstencroft Peter Li

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

This is a revised workflow for the Graves disease scenario gene annotation pipeline used in the myGrid project. The workflow had to be re-written due to the loss of the services invoked in the original workflow.