Workflow Entry: EBI_dbfetch_UniParc

Created at: 08/06/08 @ 14:05:40
Information Version 1 (of 1)

Version created on: 08/06/08 @ 14:05:40 by: Hamish McWilliam

Title: EBI_dbfetch_UniParc

Type: Taverna 1


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Information Description

From a list of UniParc entry identifers get the complete entries using the EBI's WSDbfetch service (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch).


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Outputs (2)
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Information Workflow Type

Taverna 1

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Workflow Other workflows that use similar services (18)

Only the first 2 workflows that use similar services are shown. View all workflows that use these services.


Original Uploader

Workflow EBI_dbfetch_fetchBatch (1)

Created: 31/05/08 @ 20:59:46

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

Thumb
From a list of sequence entry identifiers and a database name, fetch the sequences in fasta format using EBI's WSDbfetch service (see http://www.ebi.ac.uk/Tools/webservices/wsdl/WSDbfetch.wsdl).

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 251 times | Downloaded: 118 times

Tags (3):

Original Uploader

Workflow Protein_search_fetch_align_tree (2)

Created: 07/04/09 @ 20:13:19

Credits: User Hamish McWilliam

Attributions: Workflow EBI_ClustalW2 Workflow EBI_ClustalW2_phylogentic_tree Workflow EBI_dbfetch_fetchBatch Workflow EBI_WU-BLAST

License: Creative Commons Attribution 3.0 Unported License

Thumb
An implmentation of the classical sequence analysis workflow: Find homologues (sequence similarity search) Fetch homologues Align homologues (multiple sequence alignment) Produce phylogenetic tree In this implementation the EBI webservices are used: WU-BLAST (WSWUBlast) blastp vs. UniProtKB dbfetch (WSDbfetch) ClustalW (WSClustalW2) ClustalW (WSClustalW2) Note: this version does not add the inital query sequence to the alignment, and so is most useful when used with the identifers...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 556 times | Downloaded: 207 times

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Non-Information Resource URI: http://www.myexperiment.org/workflows/237


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