Workflow Entry: EBI_dbfetch_UniParc

Created at: 08/06/08 @ 14:05:40
Information Version 1 (of 1)

Version created on: 08/06/08 @ 14:05:40 by: Hamish McWilliam

Title: EBI_dbfetch_UniParc

Type: Taverna 1

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From a list of UniParc entry identifers get the complete entries using the EBI's WSDbfetch service (see

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Workflow Other workflows that use similar services (18)

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Original Uploader

Workflow EBI_dbfetch_fetchBatch (1)

Created: 31/05/08 @ 20:59:46

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

From a list of sequence entry identifiers and a database name, fetch the sequences in fasta format using EBI's WSDbfetch service (see

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 254 times | Downloaded: 120 times

Tags (3):

Original Uploader

Workflow Protein_search_fetch_align_tree (2)

Created: 07/04/09 @ 20:13:19

Credits: User Hamish McWilliam

Attributions: Workflow EBI_ClustalW2 Workflow EBI_ClustalW2_phylogentic_tree Workflow EBI_dbfetch_fetchBatch Workflow EBI_WU-BLAST

License: Creative Commons Attribution 3.0 Unported License

An implmentation of the classical sequence analysis workflow: Find homologues (sequence similarity search) Fetch homologues Align homologues (multiple sequence alignment) Produce phylogenetic tree In this implementation the EBI webservices are used: WU-BLAST (WSWUBlast) blastp vs. UniProtKB dbfetch (WSDbfetch) ClustalW (WSClustalW2) ClustalW (WSClustalW2) Note: this version does not add the inital query sequence to the alignment, and so is most useful when used with the identifers...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 559 times | Downloaded: 208 times

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