Retrieve_Molecular_Interactions_from_PSICQUIC_Services_for_a_list_of_Protein_AccessionsselectedServices00 Set the list of Services you would like to query using comma-separated values. For instance: "IntAct, BioGrid, DIP, MINT". If you want to query all the PSICQUIC Services available in the Registry type the word "all". The names of the PSICQUIC Services available can be found in ... http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=ACTIVE 2011-10-05 00:24:59.733 BST all 2011-10-05 00:25:13.15 BST listOfProteinAccessions00 P99999,Q06609 2011-10-05 00:28:35.809 BST Protein accessions as CSV (Comma-separated values) 2011-10-05 00:29:40.328 BST serviceNameMolecularInteractionspsicquicUrlDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_format0firstResult0maxResults0selectedServices0MIQL_query0serviceName11MolecularInteractions11psicquicUrl11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeformat_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity tab25 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefirstResult_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemaxResults_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 2000 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity , net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsstring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestring1_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity identifier: net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_formatformat_valuevalueDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_firstResultfirstResult_valuevalueDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_maxResultsmaxResults_valuevalueDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_selectedServicesselectedServicesDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_MIQL_queryConcatenate_two_stringsoutputSplit_string_into_string_list_by_regular_expressionregexregex_valuevalueSplit_string_into_string_list_by_regular_expressionstringlistOfProteinAccessionsConcatenate_two_stringsstring1string1_valuevalueConcatenate_two_stringsstring2Split_string_into_string_list_by_regular_expressionsplitserviceNameDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_serviceNameMolecularInteractionsDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_MolecularInteractionspsicquicUrlDefine_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_psicquicUrl Retrieve Molecular Interactions from PSICQUIC Services for a list of Protein Accessions 2011-10-05 00:30:59.501 BST 85735149-01a4-45a9-b5d5-db39e1e6feee 2011-10-05 00:35:58.727 BST Retrieve Molecular Interactions from PSICQUIC Services for a list of Protein Accessions in PSI-MITAB format 2011-10-05 00:32:37.563 BST 628381b4-e010-487e-9e76-7ee7bd00001f 2011-10-05 00:33:55.543 BST Rafael C. Jimenez 2011-10-05 00:30:32.767 BST Get_Molecular_Interactions_from_a_PSICQUIC_ServiceMIQL_query00 The Molecular Interactions Query Language (MIQL) defines a way to allow more powerful and flexible queries by using a specific syntax when doing searches. More information about MIQL in ... http://code.google.com/p/psicquic/wiki/MiqlReference 2011-07-22 10:00:21.635 BST P99999 2011-07-21 12:17:04.39 BST serviceRestUrl00 The location of the web service. Check ... http://code.google.com/p/psicquic/wiki/PsicquicServiceProviders ... to find REST URL addresses for PSICQUIC providers. 2011-07-22 09:57:54.604 BST http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices/current/search/ 2011-07-21 12:17:36.590 BST maxResults00 1000 2011-07-22 10:55:53.479 BST Integer value that defines the maximum number of interactions to be returned. For instance, a value of maxResults=20 will limit the results to 20 interactions. 2011-07-22 09:59:24.838 BST firstResult00 Integer value that defines the first element to be shown. If the whole result set contains 100 interactions and we use firstResult=40, the first row to be returned will be the 40 2011-07-22 09:59:17.151 BST 0 2011-07-21 12:22:36.528 BST format00 tab25 2011-07-21 12:18:28.350 BST xml25 (PSI-MIXML 2.5) tab25 (PSI-MITAB 2.5) count (Just the total count) 2011-07-22 09:59:34.119 BST MolecularInteractions Molecular Interactions in PSI MI format 2011-07-22 10:01:12.479 BST psicquicUrl PSICQUIC URL 2011-07-22 10:01:31.104 BST http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices/current/search/query/P99999?firstResult=0&maxResults=100&format=tab25 2011-07-22 10:03:12.104 BST Get_Molecular_Interactions_PSICQUICquery0serviceRestUrl0maxResults0firstResult0format0outputText00psicquicUrl00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity serviceRestUrl 0 'text/plain' java.lang.String true query 0 text/plain java.lang.String true firstResult 0 text/plain java.lang.String true maxResults 0 text/plain java.lang.String true format 0 text/plain java.lang.String true outputText 0 0 psicquicUrl 0 0 workflow net.sourceforge.taverna.scuflworkers.ncbi.ProteinFastaWorker UserNameHere 2011-07-22 10:55:28.135 BST net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_Molecular_Interactions_PSICQUICqueryMIQL_queryGet_Molecular_Interactions_PSICQUICserviceRestUrlserviceRestUrlGet_Molecular_Interactions_PSICQUICmaxResultsmaxResultsGet_Molecular_Interactions_PSICQUICfirstResultfirstResultGet_Molecular_Interactions_PSICQUICformatformatMolecularInteractionsGet_Molecular_Interactions_PSICQUICoutputTextpsicquicUrlGet_Molecular_Interactions_PSICQUICpsicquicUrl 421e43dd-9035-4572-9d1c-d1812e94b656 2011-07-22 10:55:32.948 BST 06bf7dca-a8d9-4571-9d30-da822af9d6ba 2011-07-21 12:18:49.91 BST cd6d933c-1e8f-4b1d-9fbf-734f7f2a2dc5 2011-07-22 10:02:38.260 BST 9839b6b4-e9b0-40ed-a419-0ec344fa1da3 2011-07-21 12:28:10.354 BST Check the different iput parameter you could use for this workflow in ... http://code.google.com/p/psicquic/wiki/RestAccess Check available PSICQUIC Services in ... http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS More about PSICQUIC ... http://code.google.com/p/psicquic/ 2011-07-22 09:53:12.823 BST c77460b5-607a-4890-bca3-22540eeaab3a 2011-07-21 12:21:19.235 BST 80d7e422-37ba-4490-a924-1c7274a051f2 2011-07-21 12:19:40.742 BST 986f0c66-1da6-47db-81f8-f17aec576694 2011-07-22 10:03:13.573 BST 70f6a5a5-0644-42ab-a9ec-c52fef74855f 2011-07-22 10:54:46.744 BST d1589aa2-3180-4e2b-bec6-8186c6f3c798 2011-07-21 12:22:56.144 BST Get Molecular Interactions from a PSICQUIC Service 2011-07-21 14:04:21.179 BST Rafael C. Jimenez 2011-07-21 13:57:41.639 BST ed2e070b-dd57-4111-b8d8-0cd8e8374788 2011-07-21 12:12:03.288 BST e7c9c348-0149-4e66-84f8-71675d2e2f71 2011-07-21 15:02:35.223 BST 8594e981-a7bd-4d76-bea5-aeaaf2530f28 2011-07-22 10:55:57.119 BST 64c925e1-4801-45e4-b3e5-cbf70490728f 2011-07-22 10:53:38.526 BST Define_one_query_and_retrieve_Molecular_Interactions_from_PSICQUIC_Services_registered_in_the_PSICQUIC_registry_format00 tab25 2011-07-22 11:40:30.909 BST xml25 (PSI-MIXML 2.5) tab25 (PSI-MITAB 2.5) count (Just the total count) 2011-07-22 11:40:27.503 BST firstResult00 0 2011-07-22 11:39:38.129 BST Integer value that defines the first element to be shown. If the whole result set contains 100 interactions and we use firstResult=40, the first row to be returned will be the 40 2011-07-22 11:39:32.66 BST maxResults00 1000 2011-07-22 11:39:23.316 BST Integer value that defines the maximum number of interactions to be returned. For instance, a value of maxResults=20 will limit the results to 20 interactions. 2011-07-22 11:39:15.254 BST MIQL_query00 The Molecular Interactions Query Language (MIQL) defines a way to allow more powerful and flexible queries by using a specific syntax when doing searches. More information about MIQL in ... http://code.google.com/p/psicquic/wiki/MiqlReference 2011-07-22 11:38:49.176 BST P99999 2011-07-22 11:39:05.129 BST selectedServices00 Set the list of Services you would like to query using comma-separated values. For instance: "IntAct, BioGrid, DIP, MINT". If you want to query all the PSICQUIC Services available in the Registry type the word "all". The names of the PSICQUIC Services available can be found in ... http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=ACTIVE 2011-07-22 16:08:13.399 BST all 2011-07-22 15:00:08.993 BST psicquicUrlMolecularInteractionsserviceNameGet_a_PSICQUIC_REST_URL_from_a_PSICQUIC_SOAP_URLsoapUrl0restUrl00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_Molecular_Interactions_from_a_PSICQUIC_ServiceserviceRestUrl0format0firstResult0maxResults0MIQL_query0psicquicUrl00MolecularInteractions00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeList_of_PSICQUIC_services__names_and_URLs_action0url_list11name_list11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeaction_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity ACTIVE net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterServicesByNameurl_list1name_list1selectedServices1filtered_url_list11filtered_name_list11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity name_list 1 text/plain java.lang.String true url_list 1 text/plain java.lang.String true selectedServices 1 text/plain java.lang.String true filtered_url_list 1 1 filtered_name_list 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity , net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_a_PSICQUIC_REST_URL_from_a_PSICQUIC_SOAP_URLsoapUrlfilterServicesByNamefiltered_url_listGet_Molecular_Interactions_from_a_PSICQUIC_ServiceserviceRestUrlGet_a_PSICQUIC_REST_URL_from_a_PSICQUIC_SOAP_URLrestUrlGet_Molecular_Interactions_from_a_PSICQUIC_ServiceformatformatGet_Molecular_Interactions_from_a_PSICQUIC_ServicefirstResultfirstResultGet_Molecular_Interactions_from_a_PSICQUIC_ServicemaxResultsmaxResultsGet_Molecular_Interactions_from_a_PSICQUIC_ServiceMIQL_queryMIQL_queryList_of_PSICQUIC_services__names_and_URLs_actionaction_valuevaluefilterServicesByNameurl_listList_of_PSICQUIC_services__names_and_URLs_url_listfilterServicesByNamename_listList_of_PSICQUIC_services__names_and_URLs_name_listfilterServicesByNameselectedServicesSplit_string_into_string_list_by_regular_expressionsplitSplit_string_into_string_list_by_regular_expressionstringselectedServicesSplit_string_into_string_list_by_regular_expressionregexregex_valuevaluepsicquicUrlGet_Molecular_Interactions_from_a_PSICQUIC_ServicepsicquicUrlMolecularInteractionsGet_Molecular_Interactions_from_a_PSICQUIC_ServiceMolecularInteractionsserviceNamefilterServicesByNamefiltered_name_list b1a90553-0326-4d58-910b-35e3fbb0317b 2011-07-22 16:08:39.821 BST eb1bf2e3-997e-45bc-bbb5-ae467cace1ed 2011-07-22 14:53:31.884 BST Define one query and retrieve Molecular Interactions from PSICQUIC Services registered in the PSICQUIC registry. 2011-07-22 16:12:56.790 BST a1c0197d-9ba5-4a99-af5c-1238a82409c4 2011-07-22 14:58:14.353 BST bd185df7-03dc-4b5d-b081-0925cb827073 2011-07-22 15:00:10.24 BST 5c0fd577-c971-4440-94f5-51523f4c96d1 2011-07-22 11:38:37.301 BST d08b05d5-399a-46bb-ab9a-6abc1ab2e0ad 2011-07-22 14:50:38.837 BST Define one query and retrieve Molecular Interactions from PSICQUIC Services registered in the PSICQUIC registry. 2011-07-22 16:12:48.853 BST 1f0abc2b-b33c-4a7b-94d4-0e0474613d1b 2011-07-22 16:12:58.9 BST 5c683723-f5c2-4442-9d98-0e217263e113 2011-07-22 16:12:49.212 BST Rafael C. Jimenez 2011-07-22 11:40:47.425 BST 4f0663f4-feed-4607-8dc2-62afdd0006f6 2011-07-22 11:43:18.721 BST 41ab8deb-55b4-49da-a646-baa9612a4778 2011-07-22 14:46:45.196 BST PSICQUIC_Registry__Molecular_Interactions_format00 The format to use when viewing the registry. More information in ...... http://code.google.com/p/psicquic/wiki/Registry 2011-07-20 10:55:13.432 BST txt 2011-07-20 10:55:27.120 BST action00 The action to be done. More information in ... http://code.google.com/p/psicquic/wiki/Registry 2011-07-20 10:54:55.57 BST ACTIVE 2011-07-20 10:54:13.370 BST listOfServicesservice_statusREST_Servicerestricted0format0action0responseBody00status00net.sf.taverna.t2.activitiesrest-activity1.3net.sf.taverna.t2.activities.rest.RESTActivity GET http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action={action}&format={format}&restricted={restricted} text/plain application/xml String false false true restricted java.lang.String action java.lang.String format java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerestricted_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity n net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_Servicerestrictedrestricted_valuevalueREST_ServiceformatformatREST_ServiceactionactionlistOfServicesREST_ServiceresponseBodyservice_statusREST_Servicestatus d0508e40-c978-4925-a970-6916f8afbe53 2011-07-20 11:02:13.670 BST PSICQUIC Registry (Molecular Interactions) 2011-07-20 11:01:34.529 BST 864c3f01-6798-4ae0-be15-1f1c128d31bc 2011-07-20 10:55:47.42 BST Rafael C. Jimenez 2011-07-20 11:00:38.28 BST Query the PSICQUIC registry to retrieve information about services providing molecular interactions 2011-07-20 11:00:46.622 BST List_of_PSICQUIC_services__names_and_URLs_action00 The action to be done. More information in ... http://code.google.com/p/psicquic/wiki/Registry 2011-07-20 11:16:44.909 BST ACTIVE 2011-07-20 11:16:49.894 BST statusurl_list http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices/psicquic 2011-07-20 14:07:57.741 BST List of URLs 2011-07-20 14:08:22.725 BST name_list List of names 2011-07-20 14:08:36.647 BST IntAct 2011-07-20 14:08:45.741 BST PSICQUIC_Registry__Molecular_Interactions_action0format0listOfServices00service_status00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetNamesAndURLslistOfServices0url_list11name_list11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity listOfServices 0 text/plain java.lang.String true url_list 1 1 name_list 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeformat_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity txt net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePSICQUIC_Registry__Molecular_Interactions_actionactionPSICQUIC_Registry__Molecular_Interactions_formatformat_valuevaluegetNamesAndURLslistOfServicesPSICQUIC_Registry__Molecular_Interactions_listOfServicesstatusPSICQUIC_Registry__Molecular_Interactions_service_statusurl_listgetNamesAndURLsurl_listname_listgetNamesAndURLsname_list 22f19c38-91ff-4013-ab44-b67fe2781194 2011-07-20 12:28:13.156 BST 4a65628f-8d12-42b1-8edc-18cfff6c6647 2011-07-20 12:06:49.694 BST ac698d85-dc59-406f-a404-d8185e98f873 2011-07-20 11:56:24.206 BST 3d88ce59-702c-48c5-8fc8-57d968957768 2011-07-20 12:05:37.959 BST 297f138d-72ab-49fa-ba11-5f65b607bda2 2011-07-20 12:15:29.729 BST 83b61da1-8808-4f84-830f-2dd5ac5627db 2011-07-20 12:16:22.89 BST c327b6d6-0c98-4438-9700-a9e2605f3c3f 2011-07-20 12:09:02.945 BST 9ca90520-cbdd-4a55-82dc-0a83c8447a78 2011-07-20 12:14:59.229 BST ab66cd82-d6ec-4543-a688-e9d12cae0b5f 2011-07-20 11:55:43.581 BST fbf5f51f-4b6f-490a-acf7-3df2ab406263 2011-07-20 14:08:51.272 BST b16a6438-ff71-416a-93d5-2cea88bb656c 2011-07-20 12:24:33.217 BST e0af1c4c-5286-4819-9bfb-81fe80455595 2011-07-20 11:53:54.892 BST ad8f167c-61b7-457a-adc2-ca0ca09386da 2011-07-20 12:10:15.274 BST 5f7810ea-8617-4981-9b65-4a2b4fe12b68 2011-07-20 12:14:16.260 BST f5c3a063-d7db-43c4-b824-b27beef8189b 2011-07-20 12:25:29.608 BST 954bfd80-8073-4f00-b84e-8f896b5348c7 2011-07-20 12:07:29.570 BST e6e5ec5e-d6b5-4586-97a2-1478eac4a547 2011-07-20 12:19:34.465 BST Rafael C. Jimenez 2011-07-20 14:06:25.522 BST 6c610965-991b-498c-adb1-6b93bc83840c 2011-07-20 12:05:18.506 BST cc0f0a1d-d804-4df9-b160-316c8a7ceb42 2011-07-20 11:51:28.642 BST 1b5a1965-38bc-487b-bad8-08cca31a7e1a 2011-07-20 11:17:15.238 BST 1c089893-38f1-49b3-81d2-9dde701cff7d 2011-07-20 11:56:50.269 BST 3730ed9d-e91d-4365-a55d-3dcad24cef45 2011-07-20 11:53:34.174 BST PSICQUIC provides access to molecular interaction databases. This workflow queries the registry and gets a list of available PSICQUIC services (names and URLs). 2011-07-20 14:06:35.428 BST 231ef2cc-8d5b-4fb1-8489-ceb53db9c72a 2011-07-20 12:11:49.9 BST List of PSICQUIC services (names and URLs) 2011-07-20 14:06:58.209 BST 6d111804-8da9-4964-b23d-c38704faff84 2011-07-20 12:19:02.949 BST Get_a_PSICQUIC_REST_URL_from_a_PSICQUIC_SOAP_URLsoapUrl00 PSICQUIC SOAP URL 2011-07-22 11:24:03.538 BST http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices/psicquic 2011-07-22 11:24:05.288 BST restUrl PSICQUIC REST URL 2011-07-22 11:24:29.849 BST http://www.ebi.ac.uk/Tools/webservices/psicquic/intact/webservices/current/search/ 2011-07-22 11:24:13.819 BST soapToRestsoapUrl0soapSuffix0restSuffix0restUrl00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity soapUrl 0 text/plain java.lang.String true soapSuffix 0 text/plain java.lang.String true restSuffix 0 text/plain java.lang.String true restUrl 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesoapSuffix_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity psicquic net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokerestSuffix_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity current/search/ net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesoapToRestsoapUrlsoapUrlsoapToRestsoapSuffixsoapSuffix_valuevaluesoapToRestrestSuffixrestSuffix_valuevaluerestUrlsoapToRestrestUrl a2f95235-ee41-47fd-ac8d-4e5f6a57c144 2011-07-22 11:22:15.305 BST c12d79bc-521c-4c59-a7f0-9369644c6ac0 2011-07-22 11:23:49.774 BST Get a PSICQUIC REST URL from a PSICQUIC SOAP URL 2011-07-22 11:27:13.818 BST b9585442-e589-4144-a597-a8391b8c30cc 2011-07-22 11:16:59.229 BST Rafael C. Jimenez 2011-07-22 11:24:38.535 BST 0e1ec473-e45d-4c88-ac9f-5b158e8451f3 2011-07-22 11:17:32.73 BST 2620c28a-ce91-48c0-984e-705b450f2e28 2011-07-22 11:28:24.1 BST