Workflow Entry: EBI_Whatizit

Created at: 09/07/08 @ 05:14:28

Version 1 (of 1)

Version created on: 09/07/08 @ 05:14:28 by: Hamish McWilliam | Revision comments Expand

Title: EBI_Whatizit

Type: Taverna 1

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Description

Perform a text-mining analysis of an input text document using the EBI's Whatizit tool (http://www.ebi.ac.uk/webservices/whatizit/info.jsf).

Whatizit provides a number of text-mining pipelines which can can detect various terms of biological interest in text documents. For example finding gene names and mapping them to UniProtKB identifiers, finding chemical terms and mapping them to ChEBI, etc.

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Option 1:

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Option 2:

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http://www.myexperiment.org/workflows/249/download?version=1
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Workflow Components

Inputs (2)

Name	Description
Analysis_pipeline	Name of the Whatizit text-mining pipeline to use. For example: whatizitSwissprot See the results of the getPipelinesStatus() method for a complete list of the available pipelines and their status.
Text	Input text to process. For example: NPY, BRCA1, Brca2 and Ca2

Processors (3)

Name	Type	Description
contact	arbitrarywsdl	Process an input text document using a Whatizit pipeline. See the Service entry for this web service.
Input_params	local	Build the input parameters data structure. Wraps the Whatizit pipeline name and the text document.
Unwrap_result	local	Unwrap the XML result.

Beanshells (0)

Outputs (1)

Name	Description
Whatizit_result	Whatizit analysis result.

Links (5)

Source	Sink
Analysis_pipeline	Input_params:pipelineName
Input_params:output	contact:parameters
Text	Input_params:text
Unwrap_result:return	Whatizit_result
contact:parameters	Unwrap_result:input