Find_orthologs_using_a_uniprot_accessionuniprot_accessions00
P41148
2011-10-14 11:44:54.736 BST
Just one uniprot Accession
2011-10-14 11:44:52.201 BST
orthologSpecie00
Chose in which specie you want to find the orthologs. i.e human, mouse, rabbit, yeast
2011-10-03 14:50:41.33 BST
human
2011-10-03 14:50:47.800 BST
mappedProteinsuniprotuniprot.accession_filter0uniprot.entry_type10uniprot.organism10net.sf.taverna.t2.activitiesbiomart-activity1.3net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBiomart_datasets_for_the_Ensembl_Genes_mart_servicespecies1datasetName11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFind_Orthologs_for_proteins_in_EnsemblorthologSpecie0proteinId0ensemblDataset0idReference0orthologId11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeEBI_PICR__find_cross_references_for_protein_accessionsonlyActive0searchDatabases1taxonId0Protein_accessions0mapping_table00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeonlyActive_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
false
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokesearchDatabases_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
SWISSPROT,TREMBL
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
split
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
,
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeselectSecondColumnstring0mappedProtein00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
mappedProtein
0
0
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2011-10-14 13:04:58.700 BST
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetTxIdtx_Name0Result00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://xml.nig.ac.jp/wsdl/TxSearch.wsdl
getTxId
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringseperator0stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeseperator_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_2stringlist1seperator0concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeseperator_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicatesstringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
strippedlist
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRemove_String_Duplicates_2stringlist1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
strippedlist
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBeanshellnewline00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity
newline
0
0
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expression_2regex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
split
1
l('text/plain')
1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_3seperator0stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
java.lang.String
true
concatenated
0
'text/plain'
0
workflow
org.embl.ebi.escience.scuflworkers.java.StringListMerge
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeseperator_value_2value00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
,
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_List_Unionlists2union11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
lists
2
l('text/plain')
java.lang.String
true
union
1
1
workflow
org.embl.ebi.escience.scuflworkers.java.StringSetUnion
UserNameHere
2011-10-14 12:38:56.459 BST
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeuniprotuniprot.accession_filterBiomart_datasets_for_the_Ensembl_Genes_mart_servicespeciesFind_Orthologs_for_proteins_in_EnsemblorthologSpecieFind_Orthologs_for_proteins_in_EnsemblproteinIdFind_Orthologs_for_proteins_in_EnsemblensemblDatasetFind_Orthologs_for_proteins_in_EnsemblidReferenceEBI_PICR__find_cross_references_for_protein_accessionsonlyActiveEBI_PICR__find_cross_references_for_protein_accessionssearchDatabasesEBI_PICR__find_cross_references_for_protein_accessionstaxonIdEBI_PICR__find_cross_references_for_protein_accessionsProtein_accessionsSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexselectSecondColumnstringgetTxIdtx_NameMerge_String_List_to_a_StringseperatorMerge_String_List_to_a_StringstringlistMerge_String_List_to_a_String_2stringlistMerge_String_List_to_a_String_2seperatorRemove_String_DuplicatesstringlistRemove_String_Duplicates_2stringlistSplit_string_into_string_list_by_regular_expression_2regexSplit_string_into_string_list_by_regular_expression_2stringMerge_String_List_to_a_String_3seperatorMerge_String_List_to_a_String_3stringlistString_List_UnionlistsmappedProteins
Rafael C. Jimenez
2011-10-03 15:45:49.570 BST
813a7290-bd84-4218-8cc2-439e7e9d4f92
2011-10-14 11:32:51.387 BST
a00992e3-3573-486f-b00d-6b0e862291fa
2011-10-13 18:55:02.708 BST
41b67ef0-a193-4648-a698-693adebb1425
2011-10-14 11:56:44.701 BST
99cb5843-e577-4901-a31b-d4d0a4dfa2eb
2011-10-14 10:09:30.296 BST
5459549a-6095-454d-a5ba-ac3a2950e0bb
2011-10-14 11:38:05.805 BST
bee73def-a169-4a95-8507-f4b37b92fe1c
2011-10-13 18:56:44.465 BST
49b8a7b8-07e0-4c9a-8d89-3d1468c0694e
2011-10-03 14:51:51.223 BST
e6e1ba0a-fe53-46a5-a83e-8a1b17b02136
2011-10-14 12:49:40.335 BST
b47eb806-d23e-4ef4-b318-f25881d9512b
2011-10-03 14:59:01.725 BST
25f96687-bd80-4a37-8dfd-6a0881319d53
2011-10-14 13:05:41.344 BST
dce04d8e-2b19-491c-83df-42a6d77acfa9
2011-10-03 14:54:59.858 BST
ec49ce49-3ed7-4969-a5f4-88019b1f9a06
2011-10-13 18:49:13.40 BST
b3cfa6ea-bf5a-4e28-bed3-01e79cd9b058
2011-10-03 15:39:59.979 BST
c5bbab6c-e045-4b84-9efe-e221c7fb22dd
2011-10-03 15:32:30.803 BST
53dbfc39-a64f-498e-928b-9e9ad982d097
2011-09-30 14:13:25.117 BST
6e7be16b-2ae6-4155-873a-5e800de57cb1
2011-10-14 11:45:24.440 BST
6107c6f7-3900-4fa6-aab3-e358710da18e
2011-10-14 12:53:10.635 BST
d7a9f451-489e-4880-b29b-ee3e02a57b5a
2011-10-14 11:10:35.850 BST
6263840a-107c-4257-a30e-cf59f9a1b172
2011-10-14 12:46:40.305 BST
4be4596f-edb1-41a3-9fe5-c80e9b157b56
2011-10-14 11:54:50.662 BST
bb213e3f-36aa-44d8-96de-942fb05513ea
2011-10-14 11:52:32.266 BST
730d9127-69cc-4346-8430-44ed10816cd9
2011-10-14 12:03:19.405 BST
4e7bf2df-a775-4790-8f5f-04afb910be44
2011-10-03 14:57:04.45 BST
93a09e0a-2b2f-4f81-8760-676e5f82deeb
2011-10-14 12:39:44.279 BST
82af1bdb-851e-4052-89c4-c6da63ab7c17
2011-09-30 14:14:35.733 BST
af90bb69-2f0f-4a27-b023-0aa7ad4be619
2011-10-03 15:27:26.229 BST
ed1c3647-7564-46af-93cb-e7a8da5ddaf7
2011-10-14 12:01:08.374 BST
Find orthologs based on ensembl information using as input/output uniprot accession
2011-10-14 13:02:43.30 BST
Find orthologs using a uniprot accession
2011-10-14 12:52:58.160 BST
7638a94a-7d5f-4b57-9bba-0b9164cfeabc
2011-10-14 12:16:08.439 BST
f8f36fff-fcbd-4885-b6ad-a011cd2f1d89
2011-10-14 10:08:24.752 BST
2967ec5a-ec71-407c-8514-9dfd768a763d
2011-10-14 11:41:45.17 BST
5181e427-fc18-4961-ae6f-90a894e4ced3
2011-10-03 15:43:18.158 BST
86f958fb-e911-41e0-bd58-2d866ec65b04
2011-10-14 12:23:10.902 BST
030f63b0-015d-4172-b5ac-a4d8cea43b19
2011-10-03 15:48:57.220 BST
Biomart_datasets_for_the_Ensembl_Genes_mart_servicespecies11
Felis catus
2011-10-03 10:02:05.19 BST
Filter datasets by specie. To query all the species query by "all" or leave the input value empty.
2011-10-03 10:03:49.0 BST
datasetAssembly
Assembly
2011-10-03 10:09:26.524 BST
CAT
2011-10-03 10:09:18.100 BST
datasetDate
Latest update
2011-10-03 10:09:43.789 BST
2011-09-07 22:11:36
2011-10-03 10:09:33.685 BST
datasetName
fcatus_gene_ensembl
2011-10-03 10:08:47.379 BST
Dataset Name
2011-10-03 10:08:53.686 BST
datasetSpecie
Specie
2011-10-03 10:09:00.653 BST
Felis catus
2011-10-03 10:09:09.487 BST
GetDatasetsFromBiomartEnsemblGenesspecies1datasetAssembly11datasetDate11datasetName11datasetSpecie11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity
species
1
text/plain
java.lang.String
true
datasetName
1
1
datasetSpecie
1
1
datasetDate
1
1
datasetAssembly
1
1
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGetDatasetsFromBiomartEnsemblGenesspeciesdatasetAssemblydatasetDatedatasetNamedatasetSpecie
53dbfc39-a64f-498e-928b-9e9ad982d097
2011-09-30 14:13:25.117 BST
feca51ca-2fc4-4c18-b3e6-2ae48ed1a2d6
2011-09-30 14:43:22.980 BST
525bbe5c-d7b5-44c6-9041-2fcd3b8dc654
2011-09-30 16:53:00.998 BST
be14ab0b-02c3-4a7a-a0e4-4073a4545ee9
2011-09-30 16:47:00.330 BST
4be9a13f-d297-426c-b04f-9df179615ae7
2011-10-03 10:13:55.744 BST
1f3d2cd5-8527-4b3f-b1e3-fea7195fd66c
2011-09-30 14:40:00.796 BST
755a3386-8dfe-48d1-8e94-a9cb8433fc29
2011-10-03 10:16:55.420 BST
107e9aad-2222-4790-9cfd-2c0749e1fb80
2011-10-03 10:04:42.581 BST
ded39eef-7bd3-43a5-906d-efcf73810102
2011-09-30 16:50:11.65 BST
Rafael C. Jimenez
2011-10-03 10:06:13.480 BST
Retrieve Biomart datasets for the Ensembl Genes mart service (one dataset per specie).
2011-10-03 10:16:39.57 BST
14b94ccd-ea82-4b5e-926d-097d7ab9a8d0
2011-10-03 10:09:49.9 BST
a4171ee3-7d9f-49d8-95df-fc60102eca69
2011-09-30 16:55:16.325 BST
Biomart datasets for the Ensembl Genes mart service
2011-10-03 10:16:54.116 BST
82af1bdb-851e-4052-89c4-c6da63ab7c17
2011-09-30 14:14:35.733 BST
d5f166fb-735d-4175-9434-762845a565ca
2011-09-30 16:41:35.302 BST
Find_Orthologs_for_proteins_in_EnsemblensemblDataset00
Ensembl dataset name corresponding to the specie for protein ID. Look for Ensembl dataset names in http://www.biomart.org/biomart/martservice?type=datasets&mart=ensembl
2011-10-03 13:06:09.903 BST
cfamiliaris_gene_ensembl
2011-10-03 13:06:23.607 BST
idReference00
The reference database for the protein ID. Three options: ensembl, swissprot or trembl
2011-10-03 13:04:15.144 BST
swissprot
2011-10-03 13:04:20.293 BST
proteinId00
Protein identifier
2011-10-03 13:05:26.714 BST
P41148
2011-10-03 13:05:39.355 BST
orthologSpecie00
human
2011-10-03 13:29:26.745 BST
Chose in which specie you want to find the orthologs. i.e human, mouse, rabbit, yeast
2011-10-03 13:29:14.521 BST
esemblIdsummaryorthologIdhomologDnhomologDshomologPercIdhomologSubtypeorthologyTypehomologPercIdR1findOrthologsensemblDataset0idReference0proteinId0orthologSpecie0esemblId11summary11orthologId11homologDn11homologDs11homologPercId11homologSubtype11orthologyType11homologPercIdR111net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity
proteinId
0
text/plain
java.lang.String
true
ensemblDataset
0
text/plain
java.lang.String
true
idReference
0
text/plain
java.lang.String
true
orthologSpecie
0
text/plain
java.lang.String
true
esemblId
1
1
orthologId
1
1
summary
1
1
orthologyType
1
1
homologSubtype
1
1
homologPercId
1
1
homologDs
1
1
homologDn
1
1
homologPercIdR1
1
1
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindOrthologsensemblDatasetfindOrthologsidReferencefindOrthologsproteinIdfindOrthologsorthologSpecieesemblIdsummaryorthologIdhomologDnhomologDshomologPercIdhomologSubtypeorthologyTypehomologPercIdR1
3303f135-a627-4085-8a44-da3f8ed0f485
2011-10-03 13:32:01.546 BST
Find Orthologs for proteins in Ensembl
2011-10-03 14:30:11.23 BST
81fa4e31-b146-4477-95d4-d4cfc3c13105
2011-10-03 12:29:26.247 BST
6bee3311-a925-4b2a-97a5-739467310114
2011-10-03 12:09:51.33 BST
5b3c44be-aeb6-4f38-8848-09d55591423b
2011-10-03 12:36:48.913 BST
5ebb6474-9b08-4a1f-86d9-876346e36f4e
2011-10-03 14:27:18.513 BST
2103da72-c278-4324-aac1-0cb116ce5a5e
2011-10-03 12:09:06.260 BST
41a01363-62ac-4836-9506-3d117133d0c0
2011-10-03 14:15:59.762 BST
35e8c2eb-1a1e-4850-8214-c252477b9402
2011-10-03 12:03:23.564 BST
8cc9a4bc-cf28-4006-b4f9-06df4bc1e359
2011-10-03 12:31:50.682 BST
301a1e5a-6dce-4f0f-8143-550f6f3a4e9e
2011-10-03 14:30:21.548 BST
af4aa296-86e1-4370-bb37-26ed804fb755
2011-10-03 12:33:45.480 BST
2473d45e-7ecb-4a55-80db-5cd3e4b82da0
2011-10-03 13:35:45.810 BST
90d274ae-df5a-43aa-a839-4a97136cbf55
2011-10-03 14:04:40.257 BST
2e8f54ca-fd12-4fc9-9e82-64c1f20d6cf5
2011-10-03 13:40:55.63 BST
2f40c23b-aedd-49a1-9277-961586218a52
2011-10-03 13:30:36.691 BST
f423ddfb-f8d1-4666-be18-253e30043b51
2011-10-03 14:15:01.845 BST
daa115ca-e51a-4cc7-87c4-e69c096696e3
2011-10-03 14:20:31.564 BST
93712525-a7ed-4d2b-99f2-339241325f90
2011-10-03 14:21:39.955 BST
2ef536dd-cdb1-4fa3-8cf5-8212a61997a0
2011-10-03 12:06:16.676 BST
d9aaeab1-bfa9-470d-b67f-f343a0b4d7e1
2011-10-03 12:38:52.231 BST
4d6ffc53-ae22-4031-b0b8-5b095e417fb6
2011-10-03 12:07:30.808 BST
2a7e3b86-c22b-4537-b16e-61bbbf174035
2011-10-03 14:18:44.289 BST
9cb3364c-ecac-4ace-a582-a7ff0dff6bfe
2011-10-03 14:13:53.920 BST
8bf93ec1-2839-4379-94f7-ff9fd368420f
2011-10-03 14:56:55.940 BST
29ead42b-22c8-43d2-a9b4-9b7cd9e6d3de
2011-10-03 12:31:11.58 BST
Rafael C. Jimenez
2011-10-03 14:28:07.644 BST
9fdcc050-19d3-4e03-b760-253653d655a9
2011-10-03 13:06:36.75 BST
74053ed6-b21e-4526-a1fa-7c82c4826e4a
2011-10-03 13:58:02.384 BST
1bd93725-0340-421b-9112-e0c8fa6ffaca
2011-10-03 13:40:06.240 BST
Find Orthologs for proteins in Ensembl using biomart.
2011-10-03 14:30:04.502 BST
EBI_PICR__find_cross_references_for_protein_accessionsProtein_accessions00
Input a list (comma-separated values) of protein accessions
2011-05-29 13:03:08.70 BST
ENSP00000307786,ENSP00000369497
2011-05-29 13:01:48.270 BST
searchDatabases11
SWISSPROT
2011-05-18 08:48:33.320 BST
Which databases do you want the cross-references for? You can add more than one. You can get a list of databases available in PICR using the method "getMappedDatabaseNames" from the same PICR service or looking at this document http://www.ebi.ac.uk/Tools/picr/WSDLDocumentation.do
2011-05-18 08:48:28.762 BST
onlyActive00
Do you just want accession that are active (no-deprecated)? … write down "true" or "false". If you do not specify this parameter the workflow will not work.
2011-05-18 08:47:24.674 BST
true
2011-05-18 08:47:28.100 BST
taxonId00
Create a new value and leave it empty if you do not want to filter by specie. Chose a Taxa Id if you want to limit by specie … http://www.uniprot.org/taxonomy/?query=*
2011-05-18 08:47:05.919 BST
9606
2011-05-18 08:47:10.722 BST
mapping_tablegetUPIForAccessionparameters0parameters00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.WSDLActivity
http://www.ebi.ac.uk/Tools/picr/service?wsdl
getUPIForAccession
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUPIForAccession_inputsearchDatabases1onlyActive0taxonId0accession0output00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity
accession
0
'text/plain'
false
ac_version
0
'text/plain'
false
searchDatabases
1
l('text/plain')
false
taxonId
0
'text/plain'
false
onlyActive
0
'text/plain'
false
output
0
'text/xml'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getUPIForAccession" name="parameters" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}getUPIForAccession"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="accession" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}>getUPIForAccession>accession" /><s:basetype optional="false" unbounded="false" typename="string" name="ac_version" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}>getUPIForAccession>ac_version" /><s:arraytype optional="false" unbounded="true" wrapped="false" typename="string" name="searchDatabases" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}>getUPIForAccession>searchDatabases"><s:elementtype><s:basetype optional="false" unbounded="false" typename="string" name="" qname="{http://www.w3.org/2001/XMLSchema}string" /></s:elementtype></s:arraytype><s:basetype optional="false" unbounded="false" typename="string" name="taxonId" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}>getUPIForAccession>taxonId" /><s:basetype optional="false" unbounded="false" typename="boolean" name="onlyActive" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}>getUPIForAccession>onlyActive" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUPIForAccession_outputinput0getUPIForAccessionReturn11net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
input
0
'text/xml'
java.lang.String
false
getUPIForAccessionReturn
1
l('text/xml')
1
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="getUPIForAccessionResponse" name="parameters" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}getUPIForAccessionResponse"><s:elements><s:arraytype optional="false" unbounded="true" wrapped="false" typename="UPEntry" name="getUPIForAccessionReturn" qname="{http://www.ebi.ac.uk/picr/AccessionMappingService}>getUPIForAccessionResponse>getUPIForAccessionReturn"><s:elementtype><s:complextype optional="false" unbounded="false" typename="UPEntry" name="" qname="{http://model.picr.ebi.ac.uk}UPEntry"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CRC64" qname="{http://model.picr.ebi.ac.uk}UPEntry>CRC64" /><s:basetype optional="false" unbounded="false" typename="string" name="UPI" qname="{http://model.picr.ebi.ac.uk}UPEntry>UPI" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="CrossReference" name="identicalCrossReferences" qname="{http://model.picr.ebi.ac.uk}UPEntry>identicalCrossReferences"><s:elementtype><s:complextype optional="false" unbounded="false" typename="CrossReference" name="" qname="{http://model.picr.ebi.ac.uk}CrossReference"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="accession" qname="{http://model.picr.ebi.ac.uk}CrossReference>accession" /><s:basetype optional="false" unbounded="false" typename="string" name="accessionVersion" qname="{http://model.picr.ebi.ac.uk}CrossReference>accessionVersion" /><s:basetype optional="false" unbounded="false" typename="string" name="databaseDescription" qname="{http://model.picr.ebi.ac.uk}CrossReference>databaseDescription" /><s:basetype optional="false" unbounded="false" typename="string" name="databaseName" qname="{http://model.picr.ebi.ac.uk}CrossReference>databaseName" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="dateAdded" qname="{http://model.picr.ebi.ac.uk}CrossReference>dateAdded" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="dateDeleted" qname="{http://model.picr.ebi.ac.uk}CrossReference>dateDeleted" /><s:basetype optional="false" unbounded="false" typename="boolean" name="deleted" qname="{http://model.picr.ebi.ac.uk}CrossReference>deleted" /><s:basetype optional="false" unbounded="false" typename="string" name="gi" qname="{http://model.picr.ebi.ac.uk}CrossReference>gi" /><s:basetype optional="false" unbounded="false" typename="string" name="taxonId" qname="{http://model.picr.ebi.ac.uk}CrossReference>taxonId" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="CrossReference" name="logicalCrossReferences" qname="{http://model.picr.ebi.ac.uk}UPEntry>logicalCrossReferences"><s:elementtype><s:complextype id="{http://model.picr.ebi.ac.uk}CrossReference" optional="false" unbounded="false" typename="CrossReference" name="" /></s:elementtype></s:arraytype><s:basetype optional="false" unbounded="false" typename="string" name="sequence" qname="{http://model.picr.ebi.ac.uk}UPEntry>sequence" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="timestamp" qname="{http://model.picr.ebi.ac.uk}UPEntry>timestamp" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUPIForAccession_getUPIForAccessionReturninput0identicalCrossReferences11net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
input
0
'text/xml'
java.lang.String
false
CRC64
0
'text/plain'
0
UPI
0
'text/plain'
0
identicalCrossReferences
1
l('text/xml')
1
logicalCrossReferences
1
l('text/xml')
1
sequence
0
'text/plain'
0
timestamp
0
'text/plain'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="UPEntry" name="" qname="{http://model.picr.ebi.ac.uk}UPEntry"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="CRC64" qname="{http://model.picr.ebi.ac.uk}UPEntry>CRC64" /><s:basetype optional="false" unbounded="false" typename="string" name="UPI" qname="{http://model.picr.ebi.ac.uk}UPEntry>UPI" /><s:arraytype optional="true" unbounded="true" wrapped="false" typename="CrossReference" name="identicalCrossReferences" qname="{http://model.picr.ebi.ac.uk}UPEntry>identicalCrossReferences"><s:elementtype><s:complextype optional="false" unbounded="false" typename="CrossReference" name="" qname="{http://model.picr.ebi.ac.uk}CrossReference"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="accession" qname="{http://model.picr.ebi.ac.uk}CrossReference>accession" /><s:basetype optional="false" unbounded="false" typename="string" name="accessionVersion" qname="{http://model.picr.ebi.ac.uk}CrossReference>accessionVersion" /><s:basetype optional="false" unbounded="false" typename="string" name="databaseDescription" qname="{http://model.picr.ebi.ac.uk}CrossReference>databaseDescription" /><s:basetype optional="false" unbounded="false" typename="string" name="databaseName" qname="{http://model.picr.ebi.ac.uk}CrossReference>databaseName" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="dateAdded" qname="{http://model.picr.ebi.ac.uk}CrossReference>dateAdded" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="dateDeleted" qname="{http://model.picr.ebi.ac.uk}CrossReference>dateDeleted" /><s:basetype optional="false" unbounded="false" typename="boolean" name="deleted" qname="{http://model.picr.ebi.ac.uk}CrossReference>deleted" /><s:basetype optional="false" unbounded="false" typename="string" name="gi" qname="{http://model.picr.ebi.ac.uk}CrossReference>gi" /><s:basetype optional="false" unbounded="false" typename="string" name="taxonId" qname="{http://model.picr.ebi.ac.uk}CrossReference>taxonId" /></s:elements></s:complextype></s:elementtype></s:arraytype><s:arraytype optional="true" unbounded="true" wrapped="false" typename="CrossReference" name="logicalCrossReferences" qname="{http://model.picr.ebi.ac.uk}UPEntry>logicalCrossReferences"><s:elementtype><s:complextype id="{http://model.picr.ebi.ac.uk}CrossReference" optional="false" unbounded="false" typename="CrossReference" name="" /></s:elementtype></s:arraytype><s:basetype optional="false" unbounded="false" typename="string" name="sequence" qname="{http://model.picr.ebi.ac.uk}UPEntry>sequence" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="timestamp" qname="{http://model.picr.ebi.ac.uk}UPEntry>timestamp" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUPIForAccessionReturn_identicalCrossReferencesinput0accession00databaseName00taxonId00accessionVersion00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity
input
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'text/xml'
java.lang.String
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accession
0
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'text/plain'
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0
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databaseName
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0
dateAdded
0
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dateDeleted
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deleted
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0
gi
0
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0
taxonId
0
'text/plain'
0
<s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="CrossReference" name="" qname="{http://model.picr.ebi.ac.uk}CrossReference"><s:elements><s:basetype optional="false" unbounded="false" typename="string" name="accession" qname="{http://model.picr.ebi.ac.uk}CrossReference>accession" /><s:basetype optional="false" unbounded="false" typename="string" name="accessionVersion" qname="{http://model.picr.ebi.ac.uk}CrossReference>accessionVersion" /><s:basetype optional="false" unbounded="false" typename="string" name="databaseDescription" qname="{http://model.picr.ebi.ac.uk}CrossReference>databaseDescription" /><s:basetype optional="false" unbounded="false" typename="string" name="databaseName" qname="{http://model.picr.ebi.ac.uk}CrossReference>databaseName" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="dateAdded" qname="{http://model.picr.ebi.ac.uk}CrossReference>dateAdded" /><s:basetype optional="false" unbounded="false" typename="dateTime" name="dateDeleted" qname="{http://model.picr.ebi.ac.uk}CrossReference>dateDeleted" /><s:basetype optional="false" unbounded="false" typename="boolean" name="deleted" qname="{http://model.picr.ebi.ac.uk}CrossReference>deleted" /><s:basetype optional="false" unbounded="false" typename="string" name="gi" qname="{http://model.picr.ebi.ac.uk}CrossReference>gi" /><s:basetype optional="false" unbounded="false" typename="string" name="taxonId" qname="{http://model.picr.ebi.ac.uk}CrossReference>taxonId" /></s:elements></s:complextype></s:extensions>
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
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net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokebuild_mapping_tablecrossReferenceAccs3databaseNames3accessionVersions3taxonIds3originalAccs1results00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity
originalAccs
1
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java.lang.String
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crossReferenceAccs
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databaseNames
3
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java.lang.String
true
taxonIds
3
text/plain
java.lang.String
true
accessionVersions
3
text/plain
java.lang.String
true
results
0
0
workflow
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokesplit_stringregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity
string
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regex
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split
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1
workflow
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
UserNameHere
2011-05-29 12:57:38.562 BST
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
,
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetUPIForAccessionparametersgetUPIForAccession_inputsearchDatabasesgetUPIForAccession_inputonlyActivegetUPIForAccession_inputtaxonIdgetUPIForAccession_inputaccessiongetUPIForAccession_outputinputgetUPIForAccession_getUPIForAccessionReturninputgetUPIForAccessionReturn_identicalCrossReferencesinputbuild_mapping_tablecrossReferenceAccsbuild_mapping_tabledatabaseNamesbuild_mapping_tableaccessionVersionsbuild_mapping_tabletaxonIdsbuild_mapping_tableoriginalAccssplit_stringregexsplit_stringstringmapping_table
e67869cb-4fa8-41c0-bfc9-f0d1b9b70818
2011-05-18 09:20:14.32 BST
1da59d84-2695-447b-9191-d0d5098060e0
2011-05-29 12:58:30.517 BST
b958fe71-cd1e-4dab-9442-ea1c0ce7bd0f
2011-05-29 02:59:01.82 BST
9696674a-29d4-4a7c-b9b7-f994380a5ada
2011-05-29 02:57:55.703 BST
Rafael C Jimenez
2011-05-18 08:46:20.213 BST
205fea89-5fc4-4541-8c11-781b0110fd5f
2011-05-18 07:37:33.205 BST
Find cross-references (based on 100% sequence identity) for protein accessions from more than 95 distinct databases. For instance input a list of IPI accessions and find cross-references for Swissprot and Ensembl. Mappings can be limited by source database, taxonomic ID and activity status.
2011-05-18 08:13:45.883 BST
3b3375da-905f-4f29-93b5-cd9241de9b3f
2011-05-18 07:52:21.846 BST
c7604164-c633-479c-af37-210ac6c8b3ea
2011-05-18 08:16:28.999 BST
da8428f6-e0ee-4b6c-90fd-1c1d9c2b994f
2011-05-29 13:05:38.686 BST
fb13dc79-dca6-4250-973d-3275d986381d
2011-05-29 03:00:42.756 BST
EBI PICR, find cross-references for protein accessions
2011-05-18 08:15:33.230 BST
99f35bd2-b018-4695-b0a0-b83873ac4204
2011-05-18 07:50:43.983 BST
f365598f-84e9-41c5-9dac-a3d75ee5a43b
2011-05-29 12:15:12.114 BST
35ef885d-1373-4d40-8597-ba5b07cbda78
2011-05-18 08:52:43.442 BST
f49baecc-e9e5-4240-aca0-47c73016c58e
2011-05-18 07:48:20.20 BST
a1fe0cfe-6945-4b8d-b392-0d93b75129b9
2011-05-18 08:24:35.315 BST
81d2c585-f3df-4f49-8609-42facc48b85d
2011-05-18 09:28:12.188 BST
7aa06da4-2bc5-41b2-b05c-4320cbb21523
2011-05-18 09:00:46.670 BST
e6dd081b-ea4b-468f-b11e-d38a97396793
2011-05-18 09:24:17.357 BST
761f8082-d028-496d-bb1c-d9690f8fb31c
2011-05-18 07:34:02.337 BST
2ce11204-18ee-4628-834a-b84fb8d3ce3c
2011-05-29 12:17:37.169 BST
a58a95fb-b6db-4d1c-811e-2ad5f3eb1aca
2011-05-18 09:15:08.902 BST
21af884e-458f-4234-ba8b-a462ffb45f0b
2011-05-18 09:17:43.558 BST
699353f1-5474-42fb-92c1-f2a1488142bb
2011-05-29 13:03:21.697 BST
41be1c5e-d834-45f7-9b3c-d464dae04c54
2011-05-29 12:59:44.276 BST
755870c4-e673-4bc5-88d1-ce6b5354dbb5
2011-05-18 07:38:21.962 BST
8699f6be-f587-44d2-8c86-c0e74e5232c9
2011-05-18 08:49:52.753 BST
8ebb0413-76fc-4a12-b74a-dd70c4097f69
2011-05-18 09:16:13.262 BST