Workflow Entry: EBI_OLS_TermInfo

Created at: 09/07/08 @ 05:36:41

Version 1 (of 1)

Version created on: 09/07/08 @ 05:36:40 by: Hamish McWilliam | Revision comments Expand

Title: EBI_OLS_TermInfo

Type: Taverna 1

Preview

(Click on the image to get the full size)

Download Scalable Diagram (SVG)

Description

Get details of an ontology term given its identifer.

This workflow uses the EBI’s Ontology Lookup Service (OLS) to get the details of the ontology term. The OLS suports a wide range of biological and bioinformatic ontologies. See http://www.ebi.ac.uk/ontology-lookup/ for more information.

Download

Download Workflow File/Package (SCUFL)

Run

Run this Workflow in the Taverna Workbench...

Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/250/download?version=1
[ More Info Expand ]

Workflow Components

Inputs (1)

Name	Description
Ontology_Id	Ontology term identifier to retrive information about. For example: GO:0008150.

Processors (3)

Name	Type	Description
getTermMetadata	arbitrarywsdl	Get term metadata from OLS.
Input_parameters	local	Build the input parameters structure.
Unwrap_result	local	Unwrap the result.

Outputs (1)

Name	Description
Ontology_term	Details of the ontology term.

Links (4)

Sink	Source
getTermMetadata:parameters	Input_parameters:output
Input_parameters:termId	Ontology_Id
Ontology_term	Unwrap_result:getTermMetadataReturn
Unwrap_result:input	getTermMetadata:parameters