http://soap.genome.ad.jp/KEGG.wsdl
mark_all_pathways_by_genes
org.embl.ebi.escience.scuflworkers.java.WebImageFetcher
http://soap.genome.ad.jp/tmp/
String[] split = input.split("\n");
Vector nonEmpty = new Vector();
for (int i = 0; i < split.length; i++)
{
String trimmed = split[i].trim();
nonEmpty.add(trimmed);
}
String output = "";
for (int i = 0; i < nonEmpty.size(); i++)
{
output = output + "ncbi-gi:" + (String) (nonEmpty.elementAt(i) + "\n");
}
input
output
http://soap.genome.jp/KEGG.wsdl
bconv
String[] split = input.split("\n");
Vector nonEmpty = new Vector();
for (int i = 0; i < split.length; i++)
{
String trimmed = split[i].trim();
String[] trimmedSplit = trimmed.split("\t");
if (trimmedSplit.length == 2)
{
String[] trimmedSplit2 = trimmedSplit[1].split(":");
nonEmpty.add(trimmedSplit2[0].trim());
nonEmpty.add(trimmedSplit2[1].trim());
}
}
String abbr = "";
String ids = "";
abbr = (String) (nonEmpty.elementAt(0));
ids = (String) (nonEmpty.elementAt(1));
input
abbr
ids
13928664