Workflow Entry: Perform a text based search through PubMed

Created at: 03/10/07 @ 18:36:08      Last updated: 03/12/09 @ 16:39:20
Information Version 3 (latest) (of 3)
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Version created on: 03/10/07 @ 18:36:08 by: Paul Fisher   |   Revision comments Expand

Last edited on: 03/12/09 @ 16:39:20 by: Paul Fisher

Title: Perform a text based search through PubMed

Type: Taverna 1


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Information Description

This workflow takes in a number of search terms in which to perform a search over the PubMed literature database. These search terms may be input as if entered in the web based version of PubMed. The output from this workflow is a list of PubMed identifiers in xml based format.

Example input for this workflow is given as:

9215629


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Taverna 1 workflow

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Version History

Earliest Version:
[1] - Perfrom a text based search through PubMed

Created on: Wednesday 03 October 2007 @ 18:36:08 (BST)

Created by: Paul Fisher

Revision comments:

None

Previous Versions:
[2] - Perfrom a text based search through PubMed

Created on: Wednesday 03 October 2007 @ 18:36:08 (BST)

Created by: Paul Fisher

Revision comments:

None

Latest Version:
[3] - Perform a text based search through PubMed

Created on: Wednesday 03 October 2007 @ 18:36:08 (BST)

Created by: Paul Fisher

Last edited on: Thursday 03 December 2009 @ 16:39:20 (GMT)

Last edited by: Paul Fisher

Revision comments:

Fix to the eFetch service from NCBI



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Comments Comments (2)

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  • Tuesday 12 August 2008 @ 10:45:36 (BST)

    Would you have an example input for this..? ;-)

  • Thursday 26 November 2009 @ 23:56:24 (GMT)

    Paul,

    do you have a downloadable version of it?


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