Define_Associated_Regions_and_Genesparameters00 Parameter XML Document 2011-06-03 09:18:42.976 BST <Parameters> <Parameter name="associatedSNPs"><AsociatedSNPs> <AssociatedSNP rsId="rs6920220" pValue="1.08E-15"/> </AsociatedSNPs></Parameter> </Parameters> 2011-06-03 09:19:54.811 BST associatedRegionsXML Output XML Document 2011-06-03 09:20:12.970 BST parseParametersxpath0paramXML0associatedSNPs11hapmapBuild00flankingKB00hapmapPopulation00hapmapVersion00hapmapPlugin00hapmapBaseURL00rsqCutoff00baseUrl00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity paramXML 0 text/plain java.lang.String true xpath 0 text/plain java.lang.String true flankingKB 0 0 hapmapPlugin 0 0 hapmapPopulation 0 0 hapmapVersion 0 0 hapmapBaseURL 0 0 rsqCutoff 0 0 associatedSNPs 1 1 hapmapBuild 0 0 baseUrl 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeassociatedSnpXpathvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity */AssociatedSNP net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_SNPsSNPList1build00output11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemakeLiftOverParamsDbSnpToHapMapassociatedSNP0fromBuild0toBuild0xmlParams00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity fromBuild 0 text/plain java.lang.String true toBuild 0 text/plain java.lang.String true associatedSNP 0 text/plain java.lang.String true xmlParams 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedbSnpToHapMapChainfromBuild0toBuild0chainXML00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftoverdbSnpToHapMapparameters0chainXML0xmlOut00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeunifyHapmapBuildbuildIn0ucscBuildOut00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeaddLDRegionassociatedSNP0hapmapBuild0flankingKB0pop0hapmapVersion0plugin0associatedSNPOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity associatedSNP 0 text/plain java.lang.String true hapmapBuild 0 text/plain java.lang.String true pop 0 text/plain java.lang.String true flankingKB 0 text/plain java.lang.String true plugin 0 text/plain java.lang.String true hapmapVersion 0 text/plain java.lang.String true associatedSNPOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedefineLDRegionassociatedSNP0baseURL0rsqCutoff0AssociatedSNPOut00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokehotspotBuildvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity hg17 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeHapMapToHotspotChaintoBuild0fromBuild0chainXML00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemakeLiftOverParamsHapMapToHotspottoBuild0fromBuild0associatedSNP0xmlParams00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity fromBuild 0 text/plain java.lang.String true toBuild 0 text/plain java.lang.String true associatedSNP 0 text/plain java.lang.String true xmlParams 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftoverHapMapToHotspotparameters0chainXML0xmlOut00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHotspotRegionsassociatedSnp0out00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeHotspotToHg18ChainfromBuild0toBuild0chainXML00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehg18value00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity hg18 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeHotspotToEnsemblChainfromBuild0toBuild0chainXML00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemakeLiftOverParamsHotspotToHg18associatedSNP0toBuild0fromBuild0xmlParams00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity fromBuild 0 text/plain java.lang.String true toBuild 0 text/plain java.lang.String true associatedSNP 0 text/plain java.lang.String true xmlParams 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftoverHotspotToHg18parameters0chainXML0xmlOut00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemakeLiftOverParamsHotspotToEnsemblfromBuild0associatedSNP0toBuild0xmlParams00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity fromBuild 0 text/plain java.lang.String true toBuild 0 text/plain java.lang.String true associatedSNP 0 text/plain java.lang.String true xmlParams 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftoverHotspotToEnsemblchainXML0parameters0xmlOut00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEnsemblBiomartBuilducscBuild00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetAssociatedGenesensemblBiomartBuild0AssociatedXML0dataset0virtualSchema0baseUrl0AssociatedXmlOutput00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 2 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemergeResultsxmlResults1mergedResults00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity xmlResults 1 text/plain java.lang.String true mergedResults 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemakeLiftOverParamsHapMapToEnsembltoBuild0associatedSNP0fromBuild0xmlParams00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity fromBuild 0 text/plain java.lang.String true toBuild 0 text/plain java.lang.String true associatedSNP 0 text/plain java.lang.String true xmlParams 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftoverHapMapToEnsemblparameters0chainXML0xmlOut00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeHapMapToEnsemblChaintoBuild0fromBuild0chainXML00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEnsemblInfobaseUrl0dataset00schema00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparseParametersxpathassociatedSnpXpathvalueparseParametersparamXMLparametersget_SNPsSNPListparseParametersassociatedSNPsmakeLiftOverParamsDbSnpToHapMapassociatedSNPget_SNPsoutputmakeLiftOverParamsDbSnpToHapMapfromBuildget_SNPsbuildmakeLiftOverParamsDbSnpToHapMaptoBuildunifyHapmapBuilducscBuildOutdbSnpToHapMapChainfromBuildget_SNPsbuilddbSnpToHapMapChaintoBuildunifyHapmapBuilducscBuildOutliftoverdbSnpToHapMapparametersmakeLiftOverParamsDbSnpToHapMapxmlParamsliftoverdbSnpToHapMapchainXMLdbSnpToHapMapChainchainXMLunifyHapmapBuildbuildInparseParametershapmapBuildaddLDRegionassociatedSNPliftoverdbSnpToHapMapxmlOutaddLDRegionhapmapBuildunifyHapmapBuilducscBuildOutaddLDRegionflankingKBparseParametersflankingKBaddLDRegionpopparseParametershapmapPopulationaddLDRegionhapmapVersionparseParametershapmapVersionaddLDRegionpluginparseParametershapmapPlugindefineLDRegionassociatedSNPaddLDRegionassociatedSNPOutdefineLDRegionbaseURLparseParametershapmapBaseURLdefineLDRegionrsqCutoffparseParametersrsqCutoffHapMapToHotspotChaintoBuildhotspotBuildvalueHapMapToHotspotChainfromBuildunifyHapmapBuilducscBuildOutmakeLiftOverParamsHapMapToHotspottoBuildhotspotBuildvaluemakeLiftOverParamsHapMapToHotspotfromBuildunifyHapmapBuilducscBuildOutmakeLiftOverParamsHapMapToHotspotassociatedSNPdefineLDRegionAssociatedSNPOutliftoverHapMapToHotspotparametersmakeLiftOverParamsHapMapToHotspotxmlParamsliftoverHapMapToHotspotchainXMLHapMapToHotspotChainchainXMLgetHotspotRegionsassociatedSnpliftoverHapMapToEnsemblxmlOutHotspotToHg18ChainfromBuildhotspotBuildvalueHotspotToHg18ChaintoBuildhg18valueHotspotToEnsemblChainfromBuildhotspotBuildvalueHotspotToEnsemblChaintoBuildgetEnsemblBiomartBuilducscBuildmakeLiftOverParamsHotspotToHg18associatedSNPgetHotspotRegionsoutmakeLiftOverParamsHotspotToHg18toBuildhg18valuemakeLiftOverParamsHotspotToHg18fromBuildhotspotBuildvalueliftoverHotspotToHg18parametersmakeLiftOverParamsHotspotToHg18xmlParamsliftoverHotspotToHg18chainXMLHotspotToHg18ChainchainXMLmakeLiftOverParamsHotspotToEnsemblfromBuildhotspotBuildvaluemakeLiftOverParamsHotspotToEnsemblassociatedSNPliftoverHotspotToHg18xmlOutmakeLiftOverParamsHotspotToEnsembltoBuildgetEnsemblBiomartBuilducscBuildliftoverHotspotToEnsemblchainXMLHotspotToEnsemblChainchainXMLliftoverHotspotToEnsemblparametersmakeLiftOverParamsHotspotToEnsemblxmlParamsgetAssociatedGenesensemblBiomartBuildgetEnsemblBiomartBuilducscBuildgetAssociatedGenesAssociatedXMLliftoverHotspotToEnsemblxmlOutgetAssociatedGenesdatasetgetEnsemblInfodatasetgetAssociatedGenesvirtualSchemagetEnsemblInfoschemagetAssociatedGenesbaseUrlparseParametersbaseUrlmergeResultsxmlResultsgetAssociatedGenesAssociatedXmlOutputmakeLiftOverParamsHapMapToEnsembltoBuildgetEnsemblBiomartBuilducscBuildmakeLiftOverParamsHapMapToEnsemblassociatedSNPliftoverHapMapToHotspotxmlOutmakeLiftOverParamsHapMapToEnsemblfromBuildunifyHapmapBuilducscBuildOutliftoverHapMapToEnsemblparametersmakeLiftOverParamsHapMapToEnsemblxmlParamsliftoverHapMapToEnsemblchainXMLHapMapToEnsemblChainchainXMLHapMapToEnsemblChaintoBuildgetEnsemblBiomartBuilducscBuildHapMapToEnsemblChainfromBuildunifyHapmapBuilducscBuildOutgetEnsemblInfobaseUrlparseParametersbaseUrlassociatedRegionsXMLmergeResultsmergedResults f28ad8a8-1e7f-4b65-b35d-a02f83a0399e 2012-03-19 10:58:46.299 GMT b6c5ce01-76af-4b2c-a786-27fd8ac37af8 2011-10-07 12:24:20.118 BST f7eee9ae-ec59-419c-85ac-bdf0c62e47f1 2012-01-24 10:31:48.782 GMT bf6abfef-4605-41ec-8aa8-2ffd718f872e 2012-03-19 11:14:29.537 GMT 87b5c895-7cb1-4669-80a5-541444e90594 2012-01-24 11:06:49.958 GMT 8f1e3083-ca63-4634-859a-89d07a356093 2011-10-07 13:43:17.839 BST Paul Martin 2010-06-21 13:48:39.740 BST ec54a14c-13bc-4ae0-85c4-e16e2b01ebe1 2011-10-07 12:54:07.476 BST Define Associated Regions and Genes 2010-06-21 13:49:18.948 BST 97d7621e-e252-4ba0-96b3-cfe0483ffe6d 2012-03-19 10:43:14.872 GMT Defines regions and genes from associated SNPs 2010-06-21 13:49:43.255 BST 3ddbe5fb-b731-424e-9b17-fd5928100932 2011-10-07 13:25:31.640 BST b7f497b8-7928-4110-990e-5682aebe78e0 2011-10-07 13:48:51.586 BST 04f13353-e554-4c45-add9-0bcc71578483 2012-03-19 10:51:11.343 GMT f3107bcb-66fb-41c3-b0ab-88fdb662af3d 2012-03-19 10:55:20.482 GMT 30583d85-9bc3-4c6f-a242-596ab9b7093a 2011-10-07 13:37:01.444 BST Workflow119rsIds11dataset00virtualSchema00hapmapRsIdshapmartQueryURLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity http://hapmap.ncbi.nlm.nih.gov/biomart/martservice net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebuildXMLQueriesvirtualSchema0dataset0rsIds1xmlQueries11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity rsIds 1 text/plain java.lang.String true virtualSchema 0 text/plain java.lang.String true dataset 0 text/plain java.lang.String true xmlQueries 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHapMartResponseurl0query0hapmapRsId11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 'text/x-taverna-web-url' java.lang.String true query 0 'text/x-taverna-web-url' java.lang.String true hapmapRsId 1 1 workflow org.embl.ebi.escience.scuflworkers.java.WebPageFetcher UserNameHere 2010-11-15 09:24:01.459 GMT net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 2 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeflattenHapMapRsIdsinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebuildXMLQueriesvirtualSchemavirtualSchemabuildXMLQueriesdatasetdatasetbuildXMLQueriesrsIdsrsIdsgetHapMartResponseurlhapmartQueryURLvaluegetHapMartResponsequerybuildXMLQueriesxmlQueriesflattenHapMapRsIdsinputlistgetHapMartResponsehapmapRsIdhapmapRsIdsflattenHapMapRsIdsoutputlist cdfa8c3b-8e12-4e91-bed6-cbf331ea9c29 2012-01-24 10:31:14.929 GMT f3b56dff-5fb9-4ecd-a7fd-34cac88cae6c 2011-10-07 12:24:20.425 BST Unify_Genome_BuildbuildIn00ucscBuildOutncbiBuildOuterrorunifyBuildbuildIn0errorString00ncbiBuildOut00ucscBuildOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity buildIn 0 text/plain java.lang.String true ncbiBuildOut 0 0 errorString 0 0 ucscBuildOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeunifyBuildbuildInbuildInucscBuildOutunifyBuilducscBuildOutncbiBuildOutunifyBuildncbiBuildOuterrorunifyBuilderrorString Unify Genome Build 2010-04-08 13:16:52.598 BST Paul Martin 2010-04-08 13:16:33.575 BST 684355e4-d805-4d18-b123-4f534539d66b 2011-10-07 12:24:20.829 BST Given a build string attempts to produce the build representation for NCBI/Ensembl and UCSC. 2010-04-08 13:26:17.937 BST Workflow141queries11virtualSchema00dataset00baseUrl00biomartResponsebuildXMLQueriesdataset0virtualSchema0queries1xmlQueries11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity virtualSchema 0 text/plain java.lang.String true dataset 0 text/plain java.lang.String true queries 1 text/plain java.lang.String true xmlQueries 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebiomartQueryURLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity /biomart/martservice net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetBiomartResponsequery0url0biomartResponse11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 'text/x-taverna-web-url' java.lang.String true query 0 'text/x-taverna-web-url' java.lang.String true biomartResponse 1 1 workflow org.embl.ebi.escience.scuflworkers.java.WebPageFetcher UserNameHere 2011-02-24 12:05:09.409 GMT net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 2 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeflattenBiomartResponseinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateUrlstring20string10output00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokebuildXMLQueriesdatasetdatasetbuildXMLQueriesvirtualSchemavirtualSchemabuildXMLQueriesqueriesqueriesgetBiomartResponsequerybuildXMLQueriesxmlQueriesgetBiomartResponseurlcreateUrloutputflattenBiomartResponseinputlistgetBiomartResponsebiomartResponsecreateUrlstring2biomartQueryURLvaluecreateUrlstring1baseUrlbiomartResponseflattenBiomartResponseoutputlist 5c8893fa-adf1-498d-9cce-6b650207bb72 2012-03-19 10:42:41.193 GMT 5ce77ae4-42f5-48fd-b510-4163d4a3be18 2011-10-07 12:18:06.756 BST 068d6dbe-9489-4164-ac16-bc1a0e4e9587 2012-01-24 10:30:44.473 GMT cd4b10fe-ee1b-410f-aa56-aa5153a1606c 2011-10-07 13:25:01.99 BST Unify_Genome_BuildbuildIn00ucscBuildOutncbiBuildOuterrorunifyBuildbuildIn0errorString00ncbiBuildOut00ucscBuildOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity buildIn 0 text/plain java.lang.String true ncbiBuildOut 0 0 errorString 0 0 ucscBuildOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeunifyBuildbuildInbuildInucscBuildOutunifyBuilducscBuildOutncbiBuildOutunifyBuildncbiBuildOuterrorunifyBuilderrorString b38d97b8-95ba-4edf-bde9-40ac98f699e4 2011-10-07 12:24:20.806 BST Unify Genome Build 2010-04-08 13:16:52.598 BST Paul Martin 2010-04-08 13:16:33.575 BST Given a build string attempts to produce the build representation for NCBI/Ensembl and UCSC. 2010-04-08 13:26:17.937 BST Define_LD_RegionassociatedSNP00baseURL00rsqCutoff00AssociatedSNPOutgetLDByRegionbaseURL0associatedSNP0rsqCutoffString0associatedSnpOut00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity associatedSNP 0 'text/x-taverna-web-url' java.lang.String true baseURL 0 'text/x-taverna-web-url' java.lang.String true rsqCutoffString 0 text/plain java.lang.String true associatedSnpOut 0 0 workflow org.embl.ebi.escience.scuflworkers.java.WebPageFetcher UserNameHere 2010-12-09 12:24:25.426 GMT net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparseHapMapDataassocSNP0rsqCutoffString0assocSNPout00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity assocSNP 0 text/plain java.lang.String true rsqCutoffString 0 text/plain java.lang.String true assocSNPout 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetLDByRegionbaseURLbaseURLgetLDByRegionassociatedSNPassociatedSNPgetLDByRegionrsqCutoffStringrsqCutoffparseHapMapDataassocSNPgetLDByRegionassociatedSnpOutparseHapMapDatarsqCutoffStringrsqCutoffAssociatedSNPOutparseHapMapDataassocSNPout c11abb19-7024-4ad7-9891-e368426588e2 2011-10-07 12:24:21.349 BST Define LD Region 2010-02-17 13:12:39.135 GMT Paul Martin 2010-02-17 13:12:05.186 GMT Workflow109datasetvirtualSchemahapmartRegistryURLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity http://hapmap.ncbi.nlm.nih.gov/biomart/martservice?type=registry net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokehapmartDatasetURLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity http://hapmap.ncbi.nlm.nih.gov/biomart/martservice?type=datasets&mart= net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHapMartRegistryurl0name00virtualSchema00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 'text/x-taverna-web-url' java.lang.String true virtualSchema 0 0 name 0 0 workflow org.embl.ebi.escience.scuflworkers.java.WebPageFetcher UserNameHere 2010-11-11 11:14:35.90 GMT net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokejoinHapMartDatasetURLstring20string10output00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokedownloadHapMartDatasetsurl0contents00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 'text/x-taverna-web-url' java.lang.String true base 0 'text/x-taverna-web-url' java.lang.String true contents 0 'text/plain,text/html' 0 workflow org.embl.ebi.escience.scuflworkers.java.WebPageFetcher net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHapMartDatasethapmartDatasets0dataset00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity hapmartDatasets 0 'text/plain' java.lang.String true dataset 0 0 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2010-11-12 09:56:17.638 GMT net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHapMartRegistryurlhapmartRegistryURLvaluejoinHapMartDatasetURLstring2getHapMartRegistrynamejoinHapMartDatasetURLstring1hapmartDatasetURLvaluedownloadHapMartDatasetsurljoinHapMartDatasetURLoutputgetHapMartDatasethapmartDatasetsdownloadHapMartDatasetscontentsdatasetgetHapMartDatasetdatasetvirtualSchemagetHapMartRegistryvirtualSchema 33838205-a676-4300-af63-813e22b5df37 2011-10-07 12:24:21.130 BST Workflow27baseUrl00datasetschemagetEnsemblInforegistryXML0baseUrl0schemaOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity registryXML 0 text/plain java.lang.String true baseUrl 0 text/plain java.lang.String true schemaOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetRegistryurl0base0contents00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 'text/x-taverna-web-url' java.lang.String true base 0 'text/x-taverna-web-url' java.lang.String true contents 0 'text/plain,text/html' 0 workflow org.embl.ebi.escience.scuflworkers.java.WebPageFetcher net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetRegistryURLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity /biomart/martservice?type=registry net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetDatasetsurl0contents00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 'text/x-taverna-web-url' java.lang.String true base 0 'text/x-taverna-web-url' java.lang.String true contents 0 'text/plain,text/html' 0 workflow org.embl.ebi.escience.scuflworkers.java.WebPageFetcher net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetDatasetdatasets0dataset00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity datasets 0 text/plain java.lang.String true dataset 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefinishDatasetUrlbaseUrl0url00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity baseUrl 0 text/plain java.lang.String true url 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEnsemblInforegistryXMLgetRegistrycontentsgetEnsemblInfobaseUrlbaseUrlgetRegistryurlgetRegistryURLvaluegetRegistrybasebaseUrlgetDatasetsurlfinishDatasetUrlurlgetDatasetdatasetsgetDatasetscontentsfinishDatasetUrlbaseUrlbaseUrldatasetgetDatasetdatasetschemagetEnsemblInfoschemaOut 9e1f1b3f-b222-409e-9882-9a58c8d5ac02 2011-10-07 12:24:20.977 BST Convert_UCSC_liftover_chain_file_to_XMLfromBuild00toBuild00chainXMLgetChainUrlsurlTemplate0fromBuild0toBuild0chainUrls11chainConversions11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity urlTemplate 0 text/plain java.lang.String true fromBuild 0 text/plain java.lang.String true toBuild 0 text/plain java.lang.String true chainUrls 1 1 chainConversions 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeurlTemplatevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity http://hgdownload.cse.ucsc.edu/goldenPath/%s/liftOver/%sTo%s.over.chain.gz net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetChainXmlchainUrls1chainConversions1fromBuild0toBuild0chainXml00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity chainUrls 1 text/plain java.lang.String true chainConversions 1 text/plain java.lang.String true fromBuild 0 text/plain java.lang.String true toBuild 0 text/plain java.lang.String true chainXml 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetChainUrlsurlTemplateurlTemplatevaluegetChainUrlsfromBuildfromBuildgetChainUrlstoBuildtoBuildgetChainXmlchainUrlsgetChainUrlschainUrlsgetChainXmlchainConversionsgetChainUrlschainConversionsgetChainXmlfromBuildfromBuildgetChainXmltoBuildtoBuildchainXMLgetChainXmlchainXml Given a conversion type (e.g. hg19 to hg18), downloads the relevant chain file(s) from UCSC and processes to XML. 2010-04-08 12:46:00.748 BST Paul Martin 2010-04-08 12:43:52.528 BST ce8b5b59-bfd8-47c5-9653-42e60b7fe42d 2011-10-07 12:24:20.756 BST Convert UCSC liftover chain file to XML 2010-04-08 12:44:39.294 BST Workflow60ucscBuildgetEnsemblBiomartDatasetsurl0contents00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 'text/x-taverna-web-url' java.lang.String true base 0 'text/x-taverna-web-url' java.lang.String true contents 0 'text/plain,text/html' 0 workflow org.embl.ebi.escience.scuflworkers.java.WebPageFetcher net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeensemblBiomartQueryURLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity http://www.ensembl.org/biomart/martservice?type=datasets&mart=ENSEMBL_MART_ENSEMBL net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHumanBuildFromDatasetsbiomartResponse0ncbiBuild00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity biomartResponse 0 text/plain java.lang.String true ncbiBuild 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokencbiBuildToUcscbuildIn0ucscBuildOut00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetEnsemblBiomartDatasetsurlensemblBiomartQueryURLvaluegetHumanBuildFromDatasetsbiomartResponsegetEnsemblBiomartDatasetscontentsncbiBuildToUcscbuildIngetHumanBuildFromDatasetsncbiBuilducscBuildncbiBuildToUcscucscBuildOut 85e82a59-ba77-4af6-bb08-f70f37a00415 2011-10-07 12:24:20.520 BST Convert_Genomic_Co_ordinatesparameters00chainXML00xmlOutliftOvercontiguous0minMatch0xmlIn0nodesToConvert0chainXmlString0xmlOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity xmlIn 0 text/plain java.lang.String true contiguous 0 text/plain java.lang.String true minMatch 0 text/plain java.lang.String true chainXmlString 0 text/plain java.lang.String true nodesToConvert 0 text/plain java.lang.String true xmlOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparseParametersparamXML0contiguous00minMatch00xmlIn00rootNode00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity paramXML 0 'text/xml' java.lang.String true toBuild 0 0 fromBuild 0 0 xmlIn 0 0 contiguous 0 0 minMatch 0 0 rootNode 0 0 workflow dom4j:dom4j:1.6 net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker UserNameHere 2010-05-05 16:53:22.183 BST net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftOvercontiguousparseParameterscontiguousliftOverminMatchparseParametersminMatchliftOverxmlInparseParametersxmlInliftOvernodesToConvertparseParametersrootNodeliftOverchainXmlStringchainXMLparseParametersparamXMLparametersxmlOutliftOverxmlOut bbc18262-5e1e-45b4-b94e-bfdd572fbd88 2011-10-07 13:21:52.924 BST Convert Genomic Co-ordinates 2010-04-26 16:01:35.910 BST Paul Martin 2010-04-26 16:00:57.252 BST Converts genomic co-ordinates between builds for the same species. Requires XML Locations as input. 2010-04-26 16:02:30.153 BST 8cf4b155-da34-4076-967e-ecf59b5aca2a 2011-10-07 12:24:21.52 BST Convert_Genomic_Co_ordinatesparameters00chainXML00xmlOutliftOvercontiguous0minMatch0xmlIn0nodesToConvert0chainXmlString0xmlOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity xmlIn 0 text/plain java.lang.String true contiguous 0 text/plain java.lang.String true minMatch 0 text/plain java.lang.String true chainXmlString 0 text/plain java.lang.String true nodesToConvert 0 text/plain java.lang.String true xmlOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparseParametersparamXML0contiguous00minMatch00xmlIn00rootNode00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity paramXML 0 'text/xml' java.lang.String true toBuild 0 0 fromBuild 0 0 xmlIn 0 0 contiguous 0 0 minMatch 0 0 rootNode 0 0 workflow dom4j:dom4j:1.6 net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker UserNameHere 2010-05-05 16:53:22.183 BST net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftOvercontiguousparseParameterscontiguousliftOverminMatchparseParametersminMatchliftOverxmlInparseParametersxmlInliftOvernodesToConvertparseParametersrootNodeliftOverchainXmlStringchainXMLparseParametersparamXMLparametersxmlOutliftOverxmlOut Paul Martin 2010-04-26 16:00:57.252 BST Converts genomic co-ordinates between builds for the same species. Requires XML Locations as input. 2010-04-26 16:02:30.153 BST 3ce3fd14-5b92-4fe6-8198-bba08b46242d 2011-10-07 12:24:20.478 BST Convert Genomic Co-ordinates 2010-04-26 16:01:35.910 BST Convert_Genomic_Co_ordinatesparameters00chainXML00xmlOutliftOvercontiguous0minMatch0xmlIn0nodesToConvert0chainXmlString0xmlOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity xmlIn 0 text/plain java.lang.String true contiguous 0 text/plain java.lang.String true minMatch 0 text/plain java.lang.String true chainXmlString 0 text/plain java.lang.String true nodesToConvert 0 text/plain java.lang.String true xmlOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparseParametersparamXML0contiguous00minMatch00xmlIn00rootNode00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity paramXML 0 'text/xml' java.lang.String true toBuild 0 0 fromBuild 0 0 xmlIn 0 0 contiguous 0 0 minMatch 0 0 rootNode 0 0 workflow dom4j:dom4j:1.6 net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker UserNameHere 2010-05-05 16:53:22.183 BST net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftOvercontiguousparseParameterscontiguousliftOverminMatchparseParametersminMatchliftOverxmlInparseParametersxmlInliftOvernodesToConvertparseParametersrootNodeliftOverchainXmlStringchainXMLparseParametersparamXMLparametersxmlOutliftOverxmlOut Paul Martin 2010-04-26 16:00:57.252 BST e03e4fbb-32e5-460a-9c9d-c2986040dc6c 2011-10-07 12:24:21.216 BST Converts genomic co-ordinates between builds for the same species. Requires XML Locations as input. 2010-04-26 16:02:30.153 BST Convert Genomic Co-ordinates 2010-04-26 16:01:35.910 BST Workflow60AssociatedXML00ensemblBiomartBuild00dataset00virtualSchema00baseUrl00AssociatedXmlOutputgetAssociatedRegionLocationsassociatedXML0ensemblBiomartBuild0queries11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity associatedXML 0 text/plain java.lang.String true ensemblBiomartBuild 0 text/plain java.lang.String true queries 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateGeneXMLensemblBiomartBuild0biomartResultsArray1geneXML00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity ensemblBiomartBuild 0 text/plain java.lang.String true biomartResultsArray 1 text/plain java.lang.String true geneXML 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeaddGenesToAssociatedXMLgeneXML0associatedXmlIn0ensemblBiomartBuild0associatedXmlOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity associatedXmlIn 0 text/plain java.lang.String true geneXML 0 text/plain java.lang.String true ensemblBiomartBuild 0 text/plain java.lang.String true associatedXmlOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetBiomartResponsequeries1virtualSchema0dataset0baseUrl0biomartResponse11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetAssociatedRegionLocationsassociatedXMLAssociatedXMLgetAssociatedRegionLocationsensemblBiomartBuildensemblBiomartBuildcreateGeneXMLensemblBiomartBuildensemblBiomartBuildcreateGeneXMLbiomartResultsArraygetBiomartResponsebiomartResponseaddGenesToAssociatedXMLgeneXMLcreateGeneXMLgeneXMLaddGenesToAssociatedXMLassociatedXmlInAssociatedXMLaddGenesToAssociatedXMLensemblBiomartBuildensemblBiomartBuildgetBiomartResponsequeriesgetAssociatedRegionLocationsqueriesgetBiomartResponsevirtualSchemavirtualSchemagetBiomartResponsedatasetdatasetgetBiomartResponsebaseUrlbaseUrlAssociatedXmlOutputaddGenesToAssociatedXMLassociatedXmlOut 0d1e4568-5f54-45f0-b002-86ba82a67b2e 2012-03-19 10:42:56.489 GMT 4b45658d-2c15-4d03-b4e4-cf29a8626c21 2012-03-19 10:55:03.622 GMT b44f94f9-fb55-49d4-b4dc-924f7a900471 2011-10-07 13:25:05.809 BST bf6bee48-be7a-4990-ad1a-cb39b03bae03 2011-10-07 13:48:47.717 BST 09530105-23d0-4bb7-81da-3151db9af74e 2011-10-07 12:23:49.453 BST 173d6f11-5142-42f7-bbb2-c70dabd640e9 2012-01-24 10:30:52.897 GMT 73a6f7f2-aac3-4afc-ae68-ff06a6188299 2011-10-07 13:42:35.744 BST ee79c9fd-face-426c-ae25-628ff75f8ad1 2012-03-19 10:58:25.427 GMT 38fe35fa-4838-4572-82f6-b35a2d69c8c5 2011-10-07 12:18:06.680 BST f10b2c66-966a-4f6b-874b-6c4090e6268e 2012-03-19 10:50:50.802 GMT 626e6950-b84d-4bc9-98a0-8530e2666bcd 2011-10-07 13:36:16.677 BST gets_associated_SNP_info_from_NCBISNPList11 2010-01-22 13:26:27.843 GMT text/plain 2010-01-22 13:26:27.796 GMT output text/xml 2010-01-22 13:26:27.859 GMT buildeUtilsDBvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity snp net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeremoveDuplicateSNPsassociatedSNPs1strippedlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity associatedSNPs 1 l('text/plain') java.lang.String true strippedlist 1 1 workflow org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates UserNameHere 2010-04-28 16:33:59.106 BST net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeeFetchXMLdb0id0output00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity db 0 'text/plain' java.lang.String true id 0 'text/plain' java.lang.String true WebEnv 0 'text/plain' java.lang.String true query_key 0 'text/plain' java.lang.String true tool 0 'text/plain' java.lang.String true email 0 'text/plain' java.lang.String true retstart 0 'text/plain' java.lang.String true retmax 0 'text/plain' java.lang.String true rettype 0 'text/plain' java.lang.String true strand 0 'text/plain' java.lang.String true seq_start 0 'text/plain' java.lang.String true seq_stop 0 'text/plain' java.lang.String true complexity 0 'text/plain' java.lang.String true report 0 'text/plain' java.lang.String true output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="eFetchRequest" name="parameters" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}eFetchRequest"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="db" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;db" /><s:basetype optional="true" unbounded="false" typename="string" name="id" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;id" /><s:basetype optional="true" unbounded="false" typename="string" name="WebEnv" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;WebEnv" /><s:basetype optional="true" unbounded="false" typename="string" name="query_key" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;query_key" /><s:basetype optional="true" unbounded="false" typename="string" name="tool" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;tool" /><s:basetype optional="true" unbounded="false" typename="string" name="email" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;email" /><s:basetype optional="true" unbounded="false" typename="string" name="retstart" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;retstart" /><s:basetype optional="true" unbounded="false" typename="string" name="retmax" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;retmax" /><s:basetype optional="true" unbounded="false" typename="string" name="rettype" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;rettype" /><s:basetype optional="true" unbounded="false" typename="string" name="strand" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;strand" /><s:basetype optional="true" unbounded="false" typename="string" name="seq_start" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;seq_start" /><s:basetype optional="true" unbounded="false" typename="string" name="seq_stop" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;seq_stop" /><s:basetype optional="true" unbounded="false" typename="string" name="complexity" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;complexity" /><s:basetype optional="true" unbounded="false" typename="string" name="report" qname="{http://www.ncbi.nlm.nih.gov/soap/eutils/efetch}&gt;eFetchRequest&gt;report" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefetchSNPsparameters0attachmentList11parameters00net.sf.taverna.t2.activitieswsdl-activity1.3net.sf.taverna.t2.activities.wsdl.WSDLActivity http://eutils.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl run_eFetch net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 4 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetRsXMLxpath0xml-text0nodelistAsXML11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity xpath 0 'text/plain' java.lang.String true xml-text 0 'text/xml' java.lang.String true nodelist 1 l('text/plain') 1 nodelistAsXML 1 l('text/plain') 1 workflow dom4j dom4j 1.6 716010169 dom4j:dom4j:1.6 net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 2 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokersPathvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity /*[local-name(.)='eFetchResult']/*[local-name(.)='ExchangeSet']/*[local-name(.)='Rs'] net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeTransform_XMLinFileURL0xslFileURL0outputStr00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity xslFileURL 0 'text/plain' java.lang.String true outFileURL 0 'text/plain' java.lang.String true inFileURL 0 'text/plain' java.lang.String true outputExt 0 'text/plain' java.lang.String true outputStr 0 'text/xml' 0 workflow net.sourceforge.taverna.scuflworkers.xml.XSLTWorker net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 2 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreate_and_populate_XML_filecontent0filePath00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity content 0 'text/plain' java.lang.String true filePath 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeflattenSNPsinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokemergeXMLdbSNP1snpXML1xmlOut11rsIds11net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity dbSNP 1 text/plain java.lang.String true snpXML 1 text/plain java.lang.String true xmlOut 1 1 rsIds 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeaddHapMapAttributesnpXML1hapmapSNPs1snpXMLOut11dbSnpBuild00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity snpXML 1 text/plain java.lang.String true hapmapSNPs 1 text/plain java.lang.String true snpXMLOut 1 1 dbSnpBuild 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecreateRsXslfilePath00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity filePath 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHapMartInfodataset00virtualSchema00net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokecheckHapMapdataset0virtualSchema0rsIds1hapmapRsIds11net.sf.taverna.t2.activitiesdataflow-activity1.3net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeremoveDuplicateSNPsassociatedSNPsSNPListeFetchXMLdbeUtilsDBvalueeFetchXMLidremoveDuplicateSNPsstrippedlistfetchSNPsparameterseFetchXMLoutputgetRsXMLxpathrsPathvaluegetRsXMLxml-textfetchSNPsparametersTransform_XMLinFileURLCreate_and_populate_XML_filefilePathTransform_XMLxslFileURLcreateRsXslfilePathCreate_and_populate_XML_filecontentflattenSNPsoutputlistflattenSNPsinputlistgetRsXMLnodelistAsXMLmergeXMLdbSNPTransform_XMLoutputStrmergeXMLsnpXMLSNPListaddHapMapAttributesnpXMLmergeXMLxmlOutaddHapMapAttributehapmapSNPscheckHapMaphapmapRsIdscheckHapMapdatasetgetHapMartInfodatasetcheckHapMapvirtualSchemagetHapMartInfovirtualSchemacheckHapMaprsIdsmergeXMLrsIdsoutputaddHapMapAttributesnpXMLOutbuildaddHapMapAttributedbSnpBuild gets associated SNP info from NCBI 2010-02-17 12:17:27.734 GMT Paul Martin 2010-01-22 13:26:31.265 GMT 2010-01-22 13:26:31.265 GMT 4fc654ce-22bb-41fa-bac0-b514769627b8 2012-03-19 11:12:41.815 GMT 7ce1555c-38cf-48e9-aafd-49c201204347 2011-10-07 12:24:20.566 BST 5b7cc1d3-6e9c-49df-b19e-872bdeba068d 2012-01-24 10:31:33.961 GMT Convert_Genomic_Co_ordinatesparameters00chainXML00xmlOutliftOvercontiguous0minMatch0xmlIn0nodesToConvert0chainXmlString0xmlOut00net.sf.taverna.t2.activitiesbeanshell-activity1.3net.sf.taverna.t2.activities.beanshell.BeanshellActivity xmlIn 0 text/plain java.lang.String true contiguous 0 text/plain java.lang.String true minMatch 0 text/plain java.lang.String true chainXmlString 0 text/plain java.lang.String true nodesToConvert 0 text/plain java.lang.String true xmlOut 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeparseParametersparamXML0contiguous00minMatch00xmlIn00rootNode00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity paramXML 0 'text/xml' java.lang.String true toBuild 0 0 fromBuild 0 0 xmlIn 0 0 contiguous 0 0 minMatch 0 0 rootNode 0 0 workflow dom4j:dom4j:1.6 net.sourceforge.taverna.scuflworkers.xml.XPathTextWorker UserNameHere 2010-05-05 16:53:22.183 BST net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeliftOvercontiguousparseParameterscontiguousliftOverminMatchparseParametersminMatchliftOverxmlInparseParametersxmlInliftOvernodesToConvertparseParametersrootNodeliftOverchainXmlStringchainXMLparseParametersparamXMLparametersxmlOutliftOverxmlOut Convert Genomic Co-ordinates 2010-04-26 16:01:35.910 BST Paul Martin 2010-04-26 16:00:57.252 BST Converts genomic co-ordinates between builds for the same species. Requires XML Locations as input. 2010-04-26 16:02:30.153 BST cd4d2d50-1ab7-4f8d-960f-cc0647bd3e89 2011-10-07 12:24:21.91 BST Workflow19associatedSnp00outgetRecombinationHotspotsdriver0url0userid0hapmap5sql0hapmap3sql0perlegen5sql0perlegen3sql0associatedSnpXML0associatedSNPOut00net.sf.taverna.t2.activitieslocalworker-activity1.3net.sf.taverna.t2.activities.localworker.LocalworkerActivity driver 0 text/plain java.lang.String true userid 0 text/plain java.lang.String true url 0 text/plain java.lang.String true hapmap5sql 0 text/plain java.lang.String true hapmap3sql 0 text/plain java.lang.String true perlegen5sql 0 text/plain java.lang.String true perlegen3sql 0 text/plain java.lang.String true associatedSnpXML 0 text/plain java.lang.String true associatedSNPOut 0 0 workflow net.sourceforge.taverna.scuflworkers.jdbc.SQLQueryWorker UserNameHere 2010-12-10 09:36:13.997 GMT net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedrivervalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity com.mysql.jdbc.Driver net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeurlvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity jdbc:mysql://genome-mysql.cse.ucsc.edu:3306/hg17 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeuseridvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity genome net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHapMapHotspots5_SQLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity SELECT chromStart, chromEnd FROM snpRecombHotspotHapmap WHERE chrom = ? AND chromEnd <= ? ORDER BY chromEnd DESC LIMIT 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetHapMapHotspots3_SQLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity SELECT chromStart, chromEnd FROM snpRecombHotspotHapmap WHERE chrom = ? AND chromStart >= ? ORDER BY chromStart ASC LIMIT 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetPerlegenHotspots5_SQLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity SELECT chromStart, chromEnd FROM snpRecombHotspotPerlegen WHERE chrom = ? AND chromEnd <= ? ORDER BY chromEnd DESC LIMIT 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetPerlegenHotspots3_SQLvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.3net.sf.taverna.t2.activities.stringconstant.StringConstantActivity SELECT chromStart, chromEnd FROM snpRecombHotspotPerlegen WHERE chrom = ? AND chromStart >= ? ORDER BY chromStart ASC LIMIT 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.3net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokegetRecombinationHotspotsdriverdrivervaluegetRecombinationHotspotsurlurlvaluegetRecombinationHotspotsuseriduseridvaluegetRecombinationHotspotshapmap5sqlgetHapMapHotspots5_SQLvaluegetRecombinationHotspotshapmap3sqlgetHapMapHotspots3_SQLvaluegetRecombinationHotspotsperlegen5sqlgetPerlegenHotspots5_SQLvaluegetRecombinationHotspotsperlegen3sqlgetPerlegenHotspots3_SQLvaluegetRecombinationHotspotsassociatedSnpXMLassociatedSnpoutgetRecombinationHotspotsassociatedSNPOut 3e68e183-ce8e-4ade-86d7-01cde22fb9a9 2011-10-07 12:24:21.256 BST