Find_Supporting_DocuassociatedConceptID00 Concept ID for the associated concept. 2012-06-25 11:24:38.624 UTC http://rdf.biosemantics.org/emco/v1.5/concepts/C3054574 2014-07-14 10:43:23.98 UTC conceptID00 http://rdf.biosemantics.org/emco/v1.5/concepts/C3058322 2014-07-14 10:43:05.802 UTC Concept ID for the input concept. 2012-06-25 11:24:50.460 UTC MaxNoOfSupportingDocs00 Number of documents to return. 2012-06-25 11:25:35.343 UTC 1 2012-06-25 21:08:32.467 UTC DocumentID 2014-07-14 10:43:36.339 UTC Document Identifier (currently PubMed) 2014-07-14 10:32:27.263 UTC DocumentTitle 2014-07-14 10:43:31.21 UTC Title of document 2012-06-25 21:11:56.442 UTC findSupportingDocumentsparameters0parameters00 Retrieves metadata of documents supporting a combination of two (possibly) associated concepts. 2014-07-14 10:32:01.815 UTC net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.WSDLActivity http://ws.biosemantics.org/ConceptProfileMiningService?wsdl findSupportingDocuments net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindSupportingDocuments_inputassociatedConceptCUI0conceptCUI0cutoffValue0output00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity cutoffValue 0 'text/plain' false conceptCUI 0 'text/plain' false associatedConceptCUI 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="findSupportingDocuments" name="parameters" qname="{http://services.conceptrecognizer.lumc.nl/}findSupportingDocuments"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="cutoffValue" qname="findSupportingDocuments&gt;cutoffValue" /><s:basetype optional="true" unbounded="false" typename="string" name="conceptCUI" qname="findSupportingDocuments&gt;conceptCUI" /><s:basetype optional="true" unbounded="false" typename="string" name="associatedConceptCUI" qname="findSupportingDocuments&gt;associatedConceptCUI" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindSupportingDocuments_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false return 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="findSupportingDocumentsResponse" name="parameters" qname="{http://services.conceptrecognizer.lumc.nl/}findSupportingDocumentsResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="supportingDocumentsWrapper" name="return" qname="findSupportingDocumentsResponse&gt;return"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="cuiOwner" qname="supportingDocumentsWrapper&gt;cuiOwner" /><s:basetype optional="true" unbounded="false" typename="string" name="cuiMember" qname="supportingDocumentsWrapper&gt;cuiMember" /><s:basetype optional="true" unbounded="false" typename="int" name="originalSize" qname="supportingDocumentsWrapper&gt;originalSize" /><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;supportingDocumentsWrapper&gt;SupportingDocumentsList" name="SupportingDocumentsList" qname="supportingDocumentsWrapper&gt;SupportingDocumentsList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="SupportingDocument" name="" qname="{http://services.conceptrecognizer.lumc.nl/}SupportingDocument"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="supportingDocument&gt;title" /><s:basetype optional="false" unbounded="false" typename="int" name="PMID" qname="supportingDocument&gt;PMID" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindSupportingDocuments_returninput0SupportingDocumentsList00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false cuiOwner 0 'text/plain' 0 cuiMember 0 'text/plain' 0 originalSize 0 'text/plain' 0 SupportingDocumentsList 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="true" unbounded="false" typename="supportingDocumentsWrapper" name="return" qname="findSupportingDocumentsResponse&gt;return"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="cuiOwner" qname="supportingDocumentsWrapper&gt;cuiOwner" /><s:basetype optional="true" unbounded="false" typename="string" name="cuiMember" qname="supportingDocumentsWrapper&gt;cuiMember" /><s:basetype optional="true" unbounded="false" typename="int" name="originalSize" qname="supportingDocumentsWrapper&gt;originalSize" /><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;supportingDocumentsWrapper&gt;SupportingDocumentsList" name="SupportingDocumentsList" qname="supportingDocumentsWrapper&gt;SupportingDocumentsList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="SupportingDocument" name="" qname="{http://services.conceptrecognizer.lumc.nl/}SupportingDocument"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="supportingDocument&gt;title" /><s:basetype optional="false" unbounded="false" typename="int" name="PMID" qname="supportingDocument&gt;PMID" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokereturn_SupportingDocumentsListinput0SupportingDocumentsList11net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false SupportingDocumentsList 1 l('text/xml') 1 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;supportingDocumentsWrapper&gt;SupportingDocumentsList" name="SupportingDocumentsList" qname="supportingDocumentsWrapper&gt;SupportingDocumentsList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="SupportingDocument" name="" qname="{http://services.conceptrecognizer.lumc.nl/}SupportingDocument"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="supportingDocument&gt;title" /><s:basetype optional="false" unbounded="false" typename="int" name="PMID" qname="supportingDocument&gt;PMID" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSupportingDocumentsList_SupportingDocumentsListinput0title00PMID00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false title 0 'text/plain' 0 PMID 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="SupportingDocument" name="" qname="{http://services.conceptrecognizer.lumc.nl/}SupportingDocument"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="supportingDocument&gt;title" /><s:basetype optional="false" unbounded="false" typename="int" name="PMID" qname="supportingDocument&gt;PMID" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindSupportingDocumentsparametersfindSupportingDocuments_inputoutputfindSupportingDocuments_inputassociatedConceptCUIassociatedConceptIDfindSupportingDocuments_inputconceptCUIconceptIDfindSupportingDocuments_inputcutoffValueMaxNoOfSupportingDocsfindSupportingDocuments_outputinputfindSupportingDocumentsparametersfindSupportingDocuments_returninputfindSupportingDocuments_outputreturnreturn_SupportingDocumentsListinputfindSupportingDocuments_returnSupportingDocumentsListSupportingDocumentsList_SupportingDocumentsListinputreturn_SupportingDocumentsListSupportingDocumentsListDocumentIDSupportingDocumentsList_SupportingDocumentsListPMIDDocumentTitleSupportingDocumentsList_SupportingDocumentsListtitle 384b503a-be75-439f-857a-86c5028933f3 2013-02-05 20:57:40.34 UTC 0ebd9bc1-148a-45b0-bfba-4cca56e23831 2012-06-25 11:26:12.965 UTC 8153d10c-001e-47df-80bf-f1386f80adb4 2012-06-25 10:28:40.135 UTC 60373814-d485-4aab-b229-2160b4f1808b 2014-07-14 10:46:39.479 UTC 80d83252-acb8-476f-9102-b6ffb8302a7a 2014-07-14 10:37:46.864 UTC This workflow finds documents that serve as evidence for the association between two concepts. Results: Document titles Document identifiers There seems to be a bug at the moment, since it returns empty values. 2014-07-14 10:46:37.921 UTC 034bed0e-79fa-494f-9c2c-b0ac9e64fcef 2013-02-05 20:52:52.735 UTC 884381a7-4263-4491-b63d-0a7ecc2faf7c 2013-02-05 20:55:11.467 UTC Find Supporting Documents 2012-06-25 21:03:49.894 UTC b570964b-cf69-420c-a9f0-58990880e6e7 2012-06-25 21:12:00.631 UTC 548cc3fe-6a8c-4ed0-81ff-e759b10f7c49 2012-06-25 11:30:34.97 UTC 43a798b6-f676-401a-a678-a7bc89bef13c 2012-07-18 13:28:31.349 UTC 7629788e-1dc3-4efc-9694-f50f68dee92b 2014-07-14 10:43:37.626 UTC 239fb36e-a3b6-42f0-9202-0c9a69d76e1c 2012-06-25 21:06:03.318 UTC a60113db-793c-4ed3-adfa-f54938a57ca4 2012-06-25 11:31:45.299 UTC 31a9ee78-c672-414e-8d75-b5170165f68d 2012-06-25 21:09:06.516 UTC Author: Kristina Hettne Contributors: Web services by Reinout van Schouwen Additional annotations by Marco Roos Contact: Kristina Hettne, k.m.hettne@lumc.nl Marco Roos, m.roos@lumc.nl 2012-07-18 13:27:09.234 UTC