List_Concept_SetsConcept_set_ID The IDs of the Concept Sets in the current database. 2012-07-04 08:17:29.623 UTC 1 8 10 7 2 6 9 5 4 3 11 21 33 60 73 76 89 95 97 120 126 129 134 141 151 165 159 161 163 160 162 166 164 167 181 172 178 170 194 190 169 202 180 187 186 193 201 182 200 188 173 177 199 203 183 179 176 171 185 192 184 174 195 175 198 191 197 196 189 168 13 14 17 12 19 16 20 18 15 22 30 26 31 32 25 28 29 23 24 27 41 56 47 46 42 34 44 35 59 38 57 50 54 49 52 53 58 43 48 39 36 40 45 55 37 51 72 61 69 68 62 70 71 64 65 67 66 63 74 75 78 87 84 77 82 85 79 80 83 88 81 86 93 94 90 91 92 96 117 100 108 105 119 104 109 116 110 101 113 112 106 111 98 118 99 115 114 103 107 102 121 125 123 122 124 128 127 131 130 132 133 136 139 138 135 140 137 147 150 149 145 148 146 142 144 143 154 158 152 153 157 156 155 2012-07-04 08:17:20.845 UTC Concept_set_name The names of the Concept Sets in the current database. 2012-07-04 08:16:58.51 UTC Predefined Concept Sets Chemicals Filters Genes GO Semantic Groups Toxic Effect (RTECS & IARC) Biological Process Cellular Component Molecular Function Activities & Behaviors Anatomy Chemicals & Drugs Concepts & Ideas Devices Disorders Genes & Molecular Sequences Geographic Areas Living Beings Objects Occupations Organizations Phenomena Physiology Procedures C.elegans D.melanogaster D.rerio E.coli G.gallus H.sapiens M.musculus R.norvegicus S.cerevisiae Acaricide Agricultural Chemical Avicide DNA topoisomerase II inhibitor Drug / Therapeutic Agent Experimental pesticide Fungicide Fungicide, bactericide, wood preservative Germicide, bactericide, disinfectant Growth regulator / Fertilizer Herbicid Hormone Human Data Insect attractant, repellent and chemosterilant Insecticide Known to be a carcinogen Known to be a human carcinogen Molluscicide Mutation data Natural Product Nematocide Organometallic Out-dated pesticide Overall Carcinogenic Evaluation: Group 1 Overall Carcinogenic Evaluation: Group 2A Overall Carcinogenic Evaluation: Group 2B Overall Carcinogenic Evaluation: Group 3 Overall Carcinogenic Evaluation: Group 4 Reasonably anticipated to be a carcinogen Reasonably anticipated to be a human carcinogen Reproductive Effect Rodenticide Skin / Eye Irritant Tumor data Unspecified / Unclassified pesticide Excl. filter for genes Activity Behavior Daily or Recreational Activity Event Governmental or Regulatory Activity Individual Behavior Machine Activity Occupational Activity Social Behavior Anatomical Structure Body Location or Region Body Part, Organ, or Organ Component Body Space or Junction Body Substance Body System Cell Cell Component Embryonic Structure Fully Formed Anatomical Structure Tissue Amino Acid, Peptide, or Protein Antibiotic Biologically Active Substance Biomedical or Dental Material Carbohydrate Chemical Chemical Viewed Functionally Chemical Viewed Structurally Clinical Drug Eicosanoid Element, Ion, or Isotope Enzyme Hazardous or Poisonous Substance Hormone Immunologic Factor Indicator, Reagent, or Diagnostic Aid Inorganic Chemical Lipid Neuroreactive Substance or Biogenic Amine Nucleic Acid, Nucleoside, or Nucleotide Organic Chemical Organophosphorus Compound Pharmacologic Substance Receptor Steroid Vitamin Classification Conceptual Entity Functional Concept Group Attribute Idea or Concept Intellectual Product Language Qualitative Concept Quantitative Concept Regulation or Law Spatial Concept Temporal Concept Medical Device Research Device Acquired Abnormality Anatomical Abnormality Cell or Molecular Dysfunction Congenital Abnormality Disease or Syndrome Experimental Model of Disease Finding Injury or Poisoning Mental or Behavioral Dysfunction Neoplastic Process Pathologic Function Sign or Symptom Amino Acid Sequence Carbohydrate Sequence Gene or Genome Molecular Sequence Nucleotide Sequence Geographic Area Age Group Alga Amphibian Animal Archaeon Bacterium Bird Family Group Fish Fungus Group Human Invertebrate Mammal Organism Patient or Disabled Group Plant Population Group Professional or Occupational Group Rickettsia or Chlamydia Vertebrate Virus Entity Food Manufactured Object Physical Object Substance Biomedical Occupation or Discipline Occupation or Discipline Health Care Related Organization Organization Professional Society Self-help or Relief Organization Biologic Function Environmental Effect of Humans Human-caused Phenomenon or Process Laboratory or Test Result Natural Phenomenon or Process Phenomenon or Process Cell Function Clinical Attribute Genetic Function Mental Process Molecular Function Organ or Tissue Function Organism Attribute Organism Function Physiologic Function Diagnostic Procedure Educational Activity Health Care Activity Laboratory Procedure Molecular Biology Research Technique Research Activity Therapeutic or Preventive Procedure 2012-07-04 08:16:44.883 UTC Concept_set_parent The list of IDs for the parent Concept Sets for the Concept Sets in the current database. 2012-07-04 08:19:20.3 UTC 0 1 1 1 1 1 1 2 2 2 6 6 6 6 6 6 6 6 6 6 6 6 6 6 6 7 7 7 7 7 7 7 7 7 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 10 11 11 11 11 11 11 11 11 11 21 21 21 21 21 21 21 21 21 21 21 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 33 60 60 60 60 60 60 60 60 60 60 60 60 73 73 76 76 76 76 76 76 76 76 76 76 76 76 89 89 89 89 89 95 97 97 97 97 97 97 97 97 97 97 97 97 97 97 97 97 97 97 97 97 97 97 120 120 120 120 120 126 126 129 129 129 129 134 134 134 134 134 134 141 141 141 141 141 141 141 141 141 151 151 151 151 151 151 151 2012-07-04 08:18:12.483 UTC listPredefinedConceptSetsparameters00 This is a get operation that returns a list of Concept Set names and IDs, and the IDs of the parent Concept Set. 2012-07-04 08:14:14.173 UTC net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.WSDLActivity http://ws.biosemantics.org/ConceptProfileMiningService?wsdl listPredefinedConceptSets net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokelistPredefinedConceptSets_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false return 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="listPredefinedConceptSetsResponse" name="parameters" qname="{http://services.conceptrecognizer.lumc.nl/}listPredefinedConceptSetsResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="predefinedConceptSetsWrapper" name="return" qname="listPredefinedConceptSetsResponse&gt;return"><s:elements><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;predefinedConceptSetsWrapper&gt;ConceptSetInfoList" name="ConceptSetInfoList" qname="predefinedConceptSetsWrapper&gt;ConceptSetInfoList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="conceptSetInfo" name="" qname="{http://services.conceptrecognizer.lumc.nl/}conceptSetInfo"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="conceptSetInfo&gt;name" /><s:basetype optional="false" unbounded="false" typename="int" name="id" qname="conceptSetInfo&gt;id" /><s:basetype optional="false" unbounded="false" typename="int" name="parent" qname="conceptSetInfo&gt;parent" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokelistPredefinedConceptSets_returninput0ConceptSetInfoList00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false ConceptSetInfoList 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="true" unbounded="false" typename="predefinedConceptSetsWrapper" name="return" qname="listPredefinedConceptSetsResponse&gt;return"><s:elements><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;predefinedConceptSetsWrapper&gt;ConceptSetInfoList" name="ConceptSetInfoList" qname="predefinedConceptSetsWrapper&gt;ConceptSetInfoList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="conceptSetInfo" name="" qname="{http://services.conceptrecognizer.lumc.nl/}conceptSetInfo"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="conceptSetInfo&gt;name" /><s:basetype optional="false" unbounded="false" typename="int" name="id" qname="conceptSetInfo&gt;id" /><s:basetype optional="false" unbounded="false" typename="int" name="parent" qname="conceptSetInfo&gt;parent" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokereturn_ConceptSetInfoListinput0ConceptSetInfoList11net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false ConceptSetInfoList 1 l('text/xml') 1 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;predefinedConceptSetsWrapper&gt;ConceptSetInfoList" name="ConceptSetInfoList" qname="predefinedConceptSetsWrapper&gt;ConceptSetInfoList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="conceptSetInfo" name="" qname="{http://services.conceptrecognizer.lumc.nl/}conceptSetInfo"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="conceptSetInfo&gt;name" /><s:basetype optional="false" unbounded="false" typename="int" name="id" qname="conceptSetInfo&gt;id" /><s:basetype optional="false" unbounded="false" typename="int" name="parent" qname="conceptSetInfo&gt;parent" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConceptSetInfoList_ConceptSetInfoListinput0id00name00parent00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false name 0 'text/plain' 0 id 0 'text/plain' 0 parent 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="conceptSetInfo" name="" qname="{http://services.conceptrecognizer.lumc.nl/}conceptSetInfo"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="name" qname="conceptSetInfo&gt;name" /><s:basetype optional="false" unbounded="false" typename="int" name="id" qname="conceptSetInfo&gt;id" /><s:basetype optional="false" unbounded="false" typename="int" name="parent" qname="conceptSetInfo&gt;parent" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokelistPredefinedConceptSets_outputinputlistPredefinedConceptSetsparameterslistPredefinedConceptSets_returninputlistPredefinedConceptSets_outputreturnreturn_ConceptSetInfoListinputlistPredefinedConceptSets_returnConceptSetInfoListConceptSetInfoList_ConceptSetInfoListinputreturn_ConceptSetInfoListConceptSetInfoListConcept_set_IDConceptSetInfoList_ConceptSetInfoListidConcept_set_nameConceptSetInfoList_ConceptSetInfoListnameConcept_set_parentConceptSetInfoList_ConceptSetInfoListparent Pupose: The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID. 2014-07-14 10:59:28.300 UTC 7317ebae-77ae-4b6b-8583-5dce53ad14a5 2014-07-14 10:59:41.901 UTC List Concept Sets 2012-07-04 08:23:55.304 UTC Creator: Kristina Hettne on behalf of the BioSemantics group Contributors: Web services by Reinout van Schouwen 2012-07-18 13:33:54.128 UTC d7ea2901-cc78-462f-b4ee-037d651a09f4 2012-07-18 13:34:00.715 UTC 24329ed6-1212-444b-83c9-2e4c70907c9c 2012-07-04 07:47:36.867 UTC 93c10c3d-ba50-4b18-acbf-499fc783e983 2012-07-04 08:24:18.657 UTC