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InviteWorkflow Entry: ProteinSynonymsToQuery
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 Version 1 (earliest)
(of 2)
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Version created on:
03/10/07 @ 18:36:10
by:
Marco Roos
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Revision comments 
Title: ProteinSynonymsToQuery
Type: Taverna 1
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Description
This workflow creates a query string from the query term using Martijn Schuemie's synonym service. The service is limited to proteins, enzymes and genes. An input query that is a boolean string will be split and processed, but the boolean logic of the input query will be lost.
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Option 1:
Launch in TavernaNote: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.
Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/30/download?version=1
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Earliest Version:
[1] - ProteinSynonymsToQuery
Latest Version:
[2] - ProteinSynonymsToQuery
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Original Uploader |
Created: 15/11/07 @ 09:40:24
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow discovers proteins from plain text and adds synonyms using Martijn Schuemie's proteins synonym service. Proteins are discovered with the AIDA 'Named Entity Recognize' web service by Sophia Katrenko (service based on LingPipe), from which output it filters out proteins. The Named Recognizer services uses the pre-learned genomics model, named 'MedLine', to find genomics concepts in plain text.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 92 times | Downloaded: 2 times Tags (7): |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/30/versions/1
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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