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InviteWorkflow Entry: ProteinSynonymsToQuery
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 Version 2 (latest)
(of 2)
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Version created on:
03/10/07 @ 18:36:10
by:
Marco Roos
|
Revision comments 
Last edited on: 13/11/07 @ 23:47:41 by: Marco Roos
Title: ProteinSynonymsToQuery
Type: Taverna 1
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Description
This workflow uses Martijn Schuemie's protein synonym service to produce synonyms and a new query string from the input query term. The service is limited to proteins, enzymes and genes. An input query that is a boolean string will be split and processed, but the boolean logic of the input query will be lost.
Workflow URL: http://rdf.adaptivedisclosure.org/~marco/BioAID/Public/Workflows/BioAID/ProteinSynonymsToQuery.xml
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Option 1:
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Option 2:
Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/30/download?version=2
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Earliest Version:
[1] - ProteinSynonymsToQuery
Latest Version:
[2] - ProteinSynonymsToQuery
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Original Uploader |
Created: 15/11/07 @ 09:40:24
Credits:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
This workflow discovers proteins from plain text and adds synonyms using Martijn Schuemie's proteins synonym service. Proteins are discovered with the AIDA 'Named Entity Recognize' web service by Sophia Katrenko (service based on LingPipe), from which output it filters out proteins. The Named Recognizer services uses the pre-learned genomics model, named 'MedLine', to find genomics concepts in plain text.
Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 92 times | Downloaded: 2 times Tags (7): |
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Linked Data
Non-Information Resource URI: http://www.myexperiment.org/workflows/30/versions/2
Alternative Formats
Copyright © 2007 - 2011 The University of Manchester and University of Southampton
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