Find_co_occurring_doConceptID_111 http://rdf.biosemantics.org/emco/v1.5/concepts/C1156814 2014-07-14 10:19:55.723 UTC Concept ID for the input concept. 2012-07-11 12:32:30.622 UTC ConceptID_211 Concept ID for the second concept. 2012-07-11 12:33:12.79 UTC http://rdf.biosemantics.org/emco/v1.5/concepts/C3054172 2014-07-14 10:20:11.155 UTC Cutoff_value00 1 2012-07-11 12:30:25.642 UTC The number of co-occurring documents to return. 2012-07-11 12:30:11.639 UTC Document_ID 20351271 2014-07-14 10:21:02.611 UTC PubMed ID of the returned document for which the two concepts co-occur. 2014-07-14 10:21:08.930 UTC Document_title Phosphate-activated glutaminase (GLS2), a p53-inducible regulator of glutamine metabolism and reactive oxygen species. 2014-07-14 10:20:49.70 UTC Title of the returned document for which the two concepts co-occur. 2013-02-05 19:51:24.400 UTC findCoOccurringDocumentsparameters0parameters00 This Web service operation returns the documents in which the input concepts co-occur. A cutoff value determines the number of documents to return. 2014-07-14 10:20:29.23 UTC net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.WSDLActivity http://ws.biosemantics.org/ConceptProfileMiningService?wsdl findCoOccurringDocuments net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 3 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindCoOccurringDocuments_inputconceptID10conceptID20cutoffValue0output00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity cutoffValue 0 'text/plain' false conceptID1 0 'text/plain' false conceptID2 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="findCoOccurringDocuments" name="parameters" qname="{http://services.conceptrecognizer.lumc.nl/}findCoOccurringDocuments"><s:elements><s:basetype optional="false" unbounded="false" typename="int" name="cutoffValue" qname="findCoOccurringDocuments&gt;cutoffValue" /><s:basetype optional="true" unbounded="false" typename="string" name="conceptID1" qname="findCoOccurringDocuments&gt;conceptID1" /><s:basetype optional="true" unbounded="false" typename="string" name="conceptID2" qname="findCoOccurringDocuments&gt;conceptID2" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindCoOccurringDocuments_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false return 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="findCoOccurringDocumentsResponse" name="parameters" qname="{http://services.conceptrecognizer.lumc.nl/}findCoOccurringDocumentsResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="supportingDocumentsWrapper" name="return" qname="findCoOccurringDocumentsResponse&gt;return"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="cuiOwner" qname="supportingDocumentsWrapper&gt;cuiOwner" /><s:basetype optional="true" unbounded="false" typename="string" name="cuiMember" qname="supportingDocumentsWrapper&gt;cuiMember" /><s:basetype optional="true" unbounded="false" typename="int" name="originalSize" qname="supportingDocumentsWrapper&gt;originalSize" /><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;supportingDocumentsWrapper&gt;SupportingDocumentsList" name="SupportingDocumentsList" qname="supportingDocumentsWrapper&gt;SupportingDocumentsList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="SupportingDocument" name="" qname="{http://services.conceptrecognizer.lumc.nl/}SupportingDocument"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="supportingDocument&gt;title" /><s:basetype optional="false" unbounded="false" typename="int" name="PMID" qname="supportingDocument&gt;PMID" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindCoOccurringDocuments_returninput0SupportingDocumentsList00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false cuiOwner 0 'text/plain' 0 cuiMember 0 'text/plain' 0 originalSize 0 'text/plain' 0 SupportingDocumentsList 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="true" unbounded="false" typename="supportingDocumentsWrapper" name="return" qname="findCoOccurringDocumentsResponse&gt;return"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="cuiOwner" qname="supportingDocumentsWrapper&gt;cuiOwner" /><s:basetype optional="true" unbounded="false" typename="string" name="cuiMember" qname="supportingDocumentsWrapper&gt;cuiMember" /><s:basetype optional="true" unbounded="false" typename="int" name="originalSize" qname="supportingDocumentsWrapper&gt;originalSize" /><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;supportingDocumentsWrapper&gt;SupportingDocumentsList" name="SupportingDocumentsList" qname="supportingDocumentsWrapper&gt;SupportingDocumentsList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="SupportingDocument" name="" qname="{http://services.conceptrecognizer.lumc.nl/}SupportingDocument"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="supportingDocument&gt;title" /><s:basetype optional="false" unbounded="false" typename="int" name="PMID" qname="supportingDocument&gt;PMID" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokereturn_SupportingDocumentsListinput0SupportingDocumentsList11net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false SupportingDocumentsList 1 l('text/xml') 1 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:arraytype optional="true" unbounded="false" wrapped="true" typename="&gt;supportingDocumentsWrapper&gt;SupportingDocumentsList" name="SupportingDocumentsList" qname="supportingDocumentsWrapper&gt;SupportingDocumentsList"><s:elementtype><s:complextype optional="false" unbounded="false" typename="SupportingDocument" name="" qname="{http://services.conceptrecognizer.lumc.nl/}SupportingDocument"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="supportingDocument&gt;title" /><s:basetype optional="false" unbounded="false" typename="int" name="PMID" qname="supportingDocument&gt;PMID" /></s:elements></s:complextype></s:elementtype></s:arraytype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSupportingDocumentsList_SupportingDocumentsListinput0PMID00title00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false title 0 'text/plain' 0 PMID 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="SupportingDocument" name="" qname="{http://services.conceptrecognizer.lumc.nl/}SupportingDocument"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="title" qname="supportingDocument&gt;title" /><s:basetype optional="false" unbounded="false" typename="int" name="PMID" qname="supportingDocument&gt;PMID" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefindCoOccurringDocumentsparametersfindCoOccurringDocuments_inputoutputfindCoOccurringDocuments_inputconceptID1ConceptID_1findCoOccurringDocuments_inputconceptID2ConceptID_2findCoOccurringDocuments_inputcutoffValueCutoff_valuefindCoOccurringDocuments_outputinputfindCoOccurringDocumentsparametersfindCoOccurringDocuments_returninputfindCoOccurringDocuments_outputreturnreturn_SupportingDocumentsListinputfindCoOccurringDocuments_returnSupportingDocumentsListSupportingDocumentsList_SupportingDocumentsListinputreturn_SupportingDocumentsListSupportingDocumentsListDocument_IDSupportingDocumentsList_SupportingDocumentsListPMIDDocument_titleSupportingDocumentsList_SupportingDocumentsListtitle 739b02c1-fc07-41e3-b4e5-9a7174e4df7a 2013-02-04 10:58:13.386 UTC a40a52c8-90c5-4755-a6c5-acae5f99b0e6 2012-09-11 12:53:08.81 UTC Purpose: This workflow search an indexed literature database for documents mentioning both of the input concepts. Author comments: Currently, PubMed is the underlying data source. 2014-07-14 10:23:05.43 UTC Creator: Kristina Hettne Contributors: Web services by Reinout van Schouwen Additional annotations by Marco Roos 2012-07-18 13:23:59.195 UTC d42b0294-a5cf-4cfc-9635-26486e613934 2012-09-04 11:17:59.103 UTC ab19809c-64de-48aa-b573-563d94dd784c 2012-07-11 12:34:09.767 UTC 58bdfda7-0ee2-4ba8-a29d-a1ec994b626e 2014-07-14 10:23:05.166 UTC 324bd118-08c0-4cc2-a3cf-86a0a6d802e0 2012-07-11 12:39:06.872 UTC e609f005-94e4-4f8c-b796-50f567459a97 2013-02-05 20:01:53.20 UTC Find co-occurring documents 2012-07-11 12:35:28.748 UTC 3beae759-c94b-45ff-99ab-d5471960ec11 2013-02-04 14:11:28.416 UTC 856c7313-b7d7-4522-a152-bf4f5bf5830d 2013-02-04 14:13:02.886 UTC 234b78c5-66c4-4e83-bbe0-a21ec539a50d 2012-07-18 13:24:34.655 UTC 6c42e1a2-7aec-4169-a712-79b6cf072937 2012-07-11 12:36:19.218 UTC 58b2cab3-cf9d-419f-b41a-241990b5bc21 2013-02-05 19:51:48.145 UTC