Filter_concepts_withConcept_ID00 The input concept ID(s) (Erasmus MC ontology format). 2014-07-14 10:08:02.504 UTC http://rdf.biosemantics.org/emco/v1.5/concepts/C3067636 http://rdf.biosemantics.org/emco/v1.5/concepts/C3067219 http://rdf.biosemantics.org/emco/v1.5/concepts/C3070198 http://rdf.biosemantics.org/emco/v1.5/concepts/C3054172 http://rdf.biosemantics.org/emco/v1.5/concepts/C3056377 2014-07-14 10:07:58.131 UTC Concepts_with_profiles Concept ID(s) (Erasmus MC ontology format) with profiles. 2014-07-14 10:08:53.336 UTC http://rdf.biosemantics.org/emco/v1.5/concepts/C3067636 http://rdf.biosemantics.org/emco/v1.5/concepts/C3067219 http://rdf.biosemantics.org/emco/v1.5/concepts/C3054172 http://rdf.biosemantics.org/emco/v1.5/concepts/C3056377 2014-07-14 10:08:38.737 UTC filterConceptsWithProfileparameters0parameters00 This Web service operation takes a (list of) concepts as input and returns the concept IDs of those with a profile. 2014-07-14 09:45:14.626 UTC net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.WSDLActivity http://ws.biosemantics.org/ConceptProfileMiningService?wsdl filterConceptsWithProfile net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterConceptsWithProfile_outputinput0return00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false return 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="filterConceptsWithProfileResponse" name="parameters" qname="{http://services.conceptrecognizer.lumc.nl/}filterConceptsWithProfileResponse"><s:elements><s:complextype optional="true" unbounded="false" typename="conceptSetWrapper" name="return" qname="filterConceptsWithProfileResponse&gt;return"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="conceptIDsAsString" qname="conceptSetWrapper&gt;conceptIDsAsString" /></s:elements></s:complextype></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterConceptsWithProfile_returninput0conceptIDsAsString00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLOutputSplitterActivity input 0 'text/xml' java.lang.String false conceptIDsAsString 0 'text/plain' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="true" unbounded="false" typename="conceptSetWrapper" name="return" qname="filterConceptsWithProfileResponse&gt;return"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="conceptIDsAsString" qname="conceptSetWrapper&gt;conceptIDsAsString" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterConceptsWithProfile_inputconceptSet0output00net.sf.taverna.t2.activitieswsdl-activity1.4net.sf.taverna.t2.activities.wsdl.xmlsplitter.XMLInputSplitterActivity conceptSet 0 'text/plain' false output 0 'text/xml' 0 <s:extensions xmlns:s="http://org.embl.ebi.escience/xscufl/0.1alpha"><s:complextype optional="false" unbounded="false" typename="filterConceptsWithProfile" name="parameters" qname="{http://services.conceptrecognizer.lumc.nl/}filterConceptsWithProfile"><s:elements><s:basetype optional="true" unbounded="false" typename="string" name="conceptSet" qname="filterConceptsWithProfile&gt;conceptSet" /></s:elements></s:complextype></s:extensions> net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_List_of_Strings_by_regexregex0stringlist1filteredlist11 This service filters the list at every occurrence of the specified regular expression. The regular expression provided in this case is an empty string: ^\S+$ 2013-02-05 19:40:01.968 UTC net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true regex 0 'text/plain' java.lang.String true filteredlist 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.FilterStringList net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00 The regular expression to be used for filtering. In this case: ^\S+$ 2013-02-05 19:40:36.304 UTC net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity ^\S+$ net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11 Split on newline (\n) character. 2014-07-14 09:44:15.898 UTC net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_value_1value00 Split on newline (\n) character. 2014-07-14 09:44:11.400 UTC net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokefilterConceptsWithProfileparametersfilterConceptsWithProfile_inputoutputfilterConceptsWithProfile_outputinputfilterConceptsWithProfileparametersfilterConceptsWithProfile_returninputfilterConceptsWithProfile_outputreturnfilterConceptsWithProfile_inputconceptSetSplit_string_into_string_list_by_regular_expressionsplitFilter_List_of_Strings_by_regexregexregex_valuevalueFilter_List_of_Strings_by_regexstringlistfilterConceptsWithProfile_returnconceptIDsAsStringSplit_string_into_string_list_by_regular_expressionstringConcept_IDSplit_string_into_string_list_by_regular_expressionregexregex_value_1valueConcepts_with_profilesFilter_List_of_Strings_by_regexfilteredlist ee5aef64-5154-4a96-a04f-089ee678e17d 2014-07-11 10:20:38.50 UTC Creator: Kristina Hettne on behalf of the BioSemantics group Contribution: Reinout van Schouwen (Web service) 2012-09-12 08:07:05.643 UTC 326ad476-7c6e-435b-8003-8ba9e7ad1b12 2012-09-12 08:07:46.534 UTC 9534e0b4-b900-494d-8406-0962864ff722 2013-01-28 15:05:57.217 UTC 88f2a1fc-f70d-4c2a-965a-20fa0b0c4d84 2013-02-05 11:20:15.662 UTC d329fbae-c150-4b5b-87d5-9ca191669ec8 2013-02-05 19:40:36.400 UTC cbdcdbda-54ef-4cef-afbd-bfc04ab90866 2014-07-14 10:10:25.805 UTC Purpose: Filter a list of concept id(s) by returning only those with a concept profile in the database. 2014-07-14 10:10:25.713 UTC f277c166-a637-46cb-8057-994bca43747c 2013-02-05 19:59:34.988 UTC 277ccd58-04ad-48a4-9194-fc3f3034824f 2014-07-14 10:07:18.37 UTC 6a9cd868-affd-4c48-86ac-17be4af994c1 2014-07-11 10:22:59.443 UTC 23a69643-b9c9-4163-8a19-dfa1078b2713 2012-09-12 07:55:47.752 UTC Filter concepts with profiles 2012-09-12 08:07:23.356 UTC