Ecological_niche_modinput_points00 This input takes a text file containing species occurrence points in CSV format. Each line in the file corresponds to a different record with values separated by comma. The first line must be a header containing column names also separated by comma. The following columns are mandatory to run this workflow AND must be spelled EXACTLY as follows: occurrenceID, nameComplete, decimalLongitude and decimalLatitude. Other columns can be present on the file. Columns can be in any order, but they must match the order of the corresponding values. All records are used to generate a single model regardless of the species name. 2013-11-29 11:04:37.943 UTC authorship,genusPart,infragenericEpithet,specificEpithet,infraspecificEpithet,nameComplete,uninomial,taxonName,occurrenceID,decimalLatitude,decimalLongitude,earliestDateCollected,latestDateCollected,coordinateUncertaintyInMeters,country,collector,fieldNotes,locality,maximumDepthInMeters,maximumElevationInMeters,minimumDepthInMeters,minimumElevationInMeters,value,dataProviderName,dataResourceName,dataResourceRights,dataResourceCitation,Column 28,Column 29 ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784006,52.8951,4.7199,,,,NL,,,Koegras zuidelijk van camping Zwaluw.,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783531,51.4567,3.5655,,,,NL,,,"Menno v. Coehoorngracht - Vlissingen",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778754,51.8537,4.3301,,,,NL,,,Polderwatergang-gemaal Leeuw van Putten,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778454,52.5381,5.6766,,,,NL,,,RENDIERTOCHT ter hoogte van kavels K 37/,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789363,53.097,5.9827,,,,NL,,,"BOORNBERGUMERPETTEN, aanvoersloot 1",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783851,52.6594,5.9812,,,,NL,,,"KADOELERMEER - bij Kadoelersluis",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53776332,51.9121,4.1214,,,,NL,,,Inlaatwatering-langs de Dalweg te Oostvo,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53776237,52.4681,4.8064,,,,NL,,,"De Kogersluissloot - vanaf prov. weg",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53782072,52.732,4.8658,,,,NL,,,"Leyenpolderweg - ten zuiden van t V",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779042,51.6838,3.8394,,,,NL,,,"Flaauwers Inlaag - west",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787448,52.3064,5.0945,,,,NL,,,nieuwe keverdijkse polder,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779160,52.6751,4.7415,,,,NL,,,WATERSCHEIDING TUSSEN MIDDEN REKER- EN Z,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784254,52.5196,4.8814,,,,NL,,,"SLOOT TWEEDE SLOOT TOV BOERDERIJ HS N",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778851,53.3821,6.1796,,,,NL,,,Lauwersmeer Midden 2,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778229,51.5046,3.704,,,,NL,,,"Weel Suzannapolder - Arnemuiden",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789992,52.9031,5.47,,,,NL,,,"FLUESSEN - Galamadammen",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780927,52.5241,4.9623,,,,NL,,,"Sloot parallel aan Meeuwstraat - tpv loo",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780821,52.7862,4.8571,,,,NL,,,"Barsingerhorn - vaart Nzijde Dorpsstraat",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789316,52.5782,5.9497,,,,NL,,,Hoofdtocht Polder Koekoek,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53790117,52.7537,4.963,,,,NL,,,KLEIPUT ZUIDZIJDE WESTFRIESE DIJK 450 M,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787419,51.4567,3.5655,,,,NL,,,"Menno v. Coehoorngracht - Vlissingen",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778547,52.29,5.0211,,,,NL,,,"1.9km n Veltersloot PEN",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779121,52.8983,4.9392,,,,NL,,,"Westerland - thv rioolgemaal - nabij split",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789607,52.9051,5.0504,,,,NL,,,HOOGE KWELSLOOT KRUISING SLUITGATWEG,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784133,52.7322,5.1419,,,,NL,,,"NARREVLIET NOORDZIJDE VOKKOMMENWEG THV",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787081,52.4203,4.6714,,,,NL,,,BIJ GEMAAL TEN WESTEN VAN SPAARNDAM,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781688,52.9149,5.5534,,,,NL,,,"HET ZWIN -Oudega 2 toevoer",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780907,52.572,4.7471,,,,NL,,,Noordhollands Kanaal pontveer Akersloot,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53776376,51.8116,4.3068,,,,NL,,,hoofdwatergang-bij gemaal De Biersum/Sch,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781036,52.0009,4.2744,,,,NL,,,Oude en Nieuwe Broekpolder gemaal,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778324,52.7992,4.6939,,,,NL,,,"SLOOT TOV WESTERDUINWEG NOORDZIJDE PA",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778293,53.019,4.8036,,,,NL,,,toevoerkanaal gemaal Prins Hendrikpolder,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53786744,52.0056,4.3975,,,,NL,,,"Zuidpld van Delfgauw - Ecoplas uitlaat",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781220,52.8342,4.8113,,,,NL,,,"Oudesluis - tpv brug tussen de Ruigweg en",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779200,52.5271,5.9158,,,,NL,,,Natuurgebied De Enk,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784321,52.2917,4.9313,,,,NL,,,OUDERKERKERPLAS MIDDEN OP DE PLAS,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53786909,52.3024,5.1151,,,,NL,,,Naardermeer(Groote meer),,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784041,52.8432,5.5714,,,,NL,,,"poldervaart HUITEBUURSTERPOLDER - gemaal",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783983,52.9344,4.7627,,,,NL,,,"SLOOT HALF-GEISOL - TWV STATION DEN HELDE",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783445,52.2415,4.4736,,,,NL,,,Vogelsloot - t.O.v. Leeweg tussen weg en,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787106,52.2133,4.7239,,,,NL,,,Drecht t.h.v. de brug in Bilderdam,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779219,52.4276,5.0186,,,,NL,,,Bozen meertje,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783911,52.006,4.9585,,,,NL,,,eb13 Benschopperwetering brug huisnr. 32,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783572,52.8387,4.7211,,,,NL,,,"SLOOT BIJ DUIKER TNV KRUIS - UITLANDER",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778356,52.7451,4.7979,,,,NL,,,"Harenkarspel - waterb 400m N gem Woudmeer",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781528,52.0369,4.218,,,,NL,,,Oostmadeplas Loosduinen,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779249,52.0092,4.5539,,,,NL,,,Rottemeren-noord 1,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784337,52.0221,4.3797,,,,NL,,,Delftse Hout Grote plas,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778790,51.7836,4.3623,,,,NL,,,De Kreek,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783907,52.0221,4.3797,,,,NL,,,Delftse Hout Grote plas,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781976,51.6573,4.3615,,,,NL,,,Volkerak 2000,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787339,52.6978,5.2693,,,,NL,,,Grote Put te Enkhuizen,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789858,52.3378,4.5995,,,,NL,,,"Leidsetrekvaart vanaf brug in het manpa",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780981,52.382,4.7663,,,,NL,,,ZZ DUIKER IN KRUISING HOOFDSLOOT MET TOM,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787145,52.7537,4.8258,,,,NL,,,"SLOOT TZV MIDDENWEG 300 M TWV T-SPL",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780795,52.8384,4.7539,,,,NL,,,"N-H Kanaal - tpv vlotbrug te t Zand",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781715,52.8733,5.046,,,,NL,,,WATERKAAPTOCHT BIJ BRUG IN OOM KEESWEG,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780971,52.4175,4.8968,,,,NL,,,Sloot vanaf brug t.p.v. Zuideinde nr. 50,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781884,52.3593,4.9422,,,,NL,,,ringvaart molukkenstraat,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778215,51.5771,4.4975,,,,NL,,,Krampenloop KRA2,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53786891,52.5196,4.8814,,,,NL,,,"SLOOT TWEEDE SLOOT TOV BOERDERIJ HS N",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784082,52.7829,4.881,,,,NL,,,"tpv brug - einde doodlopende weg naar gem",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784067,52.7954,4.7232,,,,NL,,,"Zijpe en Hazepolder - Ruigeweg ten zuiden",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53790080,52.8,4.9493,,,,NL,,,Westfriesche Vaart thv de Ulkeweg,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781963,51.9496,4.2664,,,,NL,,,Westgaag of Spartelvaart,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779073,53.4217,6.8744,,,,NL,,,Binnenbermsloot ten noorden van Spijkste,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781301,52.6736,4.7922,,,,NL,,,"SLOOT HOEK SPANJAARDDAM 650 M TZV NAU",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53782040,52.7876,4.8876,,,,NL,,,poldersloot 140 m zuid van gemaal.,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780779,52.9054,5.6288,,,,NL,,,"SLOTERMEER - Lytse Jerden",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781517,52.0623,4.7485,,,,NL,,,Reewijkse Hout,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783781,53.1387,5.9329,,,,NL,,,"OUDE VENEN 6-9-Med",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780846,52.7075,5.7475,,,,NL,,,ESPELERVAART eind Jupiterstraat,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781656,53.1293,5.8882,,,,NL,,,"OUDE VENEN 8-t Bil",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779361,53.1362,6.7164,,,,NL,,,"Wolfsbarge punt 2 - uitlaat geul",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779142,52.7454,4.8259,,,,NL,,,"Slootwaardpolder - poldersloot langs Ring",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53786677,52.5304,4.7817,,,,NL,,,"Marken-binnen - t Meertje tpv steiger in",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789381,52.5994,4.623,,,,NL,,,"CASTRICUM EERSTE BOMTRECHTER TOV KRUIS",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53786590,52.8043,4.6979,,,,NL,,,Sintmaarteszee.Wegsloot langs Westerduin,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778885,52.8805,4.7847,,,,NL,,,De Ballast noordelijk van duiker in Mole,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787171,52.6832,4.8616,,,,NL,,,OOSTERTOCHT KRUISING MOLENWEG,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778277,53.181,5.5055,,,,NL,,,"VAN HARINXMAKANAAL - Kiesterzijl",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780842,52.7244,4.6989,,,,NL,,,CATRIJPERMOOR DUIKER HOGE WEG ZUIDWESTZI,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784019,52.8733,5.046,,,,NL,,,WATERKAAPTOCHT BIJ BRUG IN OOM KEESWEG,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783927,51.8688,4.4999,,,,NL,,,Recreatieplas-Recreatieplas Zuidelijk Ra,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53782218,52.3653,4.6377,,,,NL,,,Zuider Buiten Spaarne ten zuiden van spo,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787091,52.397,4.9206,,,,NL,,,Florapark vijver,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778497,52.472,4.8625,,,,NL,,,NATUURBAD WIJDE WORMER VANAF STEIGER,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787513,52.8538,5.0491,,,,NL,,,"Oostertocht - tpv brug in de Robbenoordwe",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778439,52.5745,4.7172,,,,NL,,,"Laandervaart bij duiker in Rijksweg - km",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784296,52.4447,4.9826,,,,NL,,,TOEVOERSLOOT GEMAAL NOORDZIJDE DUIKER,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784536,52.8843,4.8755,,,,NL,,,"van Ewijcksvaart - brug te Ewijcksluis",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53776300,51.9778,4.459,,,,NL,,,Rodenrijse Vaart/Noordeindsevaart,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53783786,53.0701,4.778,,,,NL,,,Kopsloot Zuideinde v. effluentsloot bij,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784052,52.8258,5.0787,,,,NL,,,Hoekvaart tpv brug in de Schervenweg,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778266,53.2722,5.586,,,,NL,,,"HOLLE RIJ - langs Westerweg",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789719,52.5296,4.7274,,,,NL,,,Havens,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778391,52.6613,4.7457,,,,NL,,,"Noordhollands Kanaal - Koedijkervlotbrug",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53779158,52.6872,4.7948,,,,NL,,,Zuidelijke wegsloot v.d. Pieter Zeemanwe,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789477,52.4937,4.6964,,,,NL,,,"SLOOT NZ INSTEEKW - VANAF PARALLELWEG A 9",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778328,52.795,4.9319,,,,NL,,,"Groettocht - tpv brug in Kolhornerweg.",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778949,52.5202,4.839,,,,NL,,,"Wormer - Jisp & Neck- zijsloot van Noorde",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53781450,52.3324,5.2982,,,,NL,,,"HOGE VAART - brug Vogelweg",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53789398,51.8424,4.1314,,,,NL,,,Hoofdwatergang-Ossehoekweg west te Helle,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53786572,52.8367,5.906,,,,NL,,,"ROTTIGE MEENTHE 8 - petgat zuid",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778374,52.7109,5.8671,,,,NL,,,"Stadsgracht Marknesse - kerkpad",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778515,52.4021,5.6786,,,,NL,,,Veluwemeer,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778723,51.9126,4.3173,,,,NL,,,Vlaardingen Heemtuin,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53784433,53.169,4.873,,,,NL,,,"T.p.v. afwateringsduiker - polder Wassena",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53787401,51.8654,4.4536,,,,NL,,,Hoofdwatergang-samenkomst Z.wegsloot van,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53778707,51.956,4.4984,,,,NL,,,Bergsche Voorplas,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53780848,52.694,5.9601,,,,NL,,,Vollenhovermeer de Voorst - AT000096,,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, ,,,,,Gammarus tigrinus,,Gammarus tigrinus,53786596,52.7949,4.86,,,,NL,,,"PLAS NZ PROV - WEG STOLPEN-MIDDENMEER 300",,,,,,NLBIF,Limnodata,Copyright text.,IPR Text to be completed http://www.bgbm.org/disclaim_e.htm,, 2013-01-10 15:46:36.420 UTC use_biostif_layers00 Indicates if the BioSTIF service should be queried for available layers, in case they will be used in the modelling procedure. Possible values are "yes" or "no" (string without double quotes). 2013-12-06 12:14:22.445 UTC yes 2013-12-06 12:14:37.156 UTC serialized_final_model0 The serialization of the model that was created with all points. This is an XML content specific to openModeller. 2013-01-09 11:32:46.865 UTC create_final_model_log0 The log from creating the final model. This is only output for information. 2013-01-09 11:44:01.956 UTC internal_test_model_log0 The log from testing the model. This is only output for information. 2011-11-24 14:22:44.267 UTC internal_test_model_statistics0 An XML document containing statistics for the result of the testing of the model. 2011-11-24 14:24:54.690 UTC area_statistics1 List of projection statistics as XML content returned from openModeller. 2013-01-09 11:48:15.378 UTC projection_url1 List of projected models as URLs from where the corresponding files can be downloaded. 2013-10-21 19:04:43.683 UTC project_model_output_log1 List of logs for each model projection. 2013-01-09 11:46:29.283 UTC mean_auc0 Mean AUC value of the external tests performed during cross validation. 2013-01-09 11:41:31.57 UTC external_auc_list1 List of AUCs that resulted from the cross validation. 2013-01-09 11:40:56.674 UTC xval_create_model_log1 A list of logs for each model creation during cross validation. One log for each replicate. This output is only expected to be used to give more details of an eventual problem during cross validation. 2013-01-09 11:38:18.22 UTC xval_test_model_log1 A list of logs for each external test during cross validation. One log for each replicate. This output is only expected to be used to give more details of an eventual problem during cross validation. 2013-01-09 11:38:45.962 UTC xval_test_model_statistics1 A list of test results (XML content specific to openModeller) created as part of the cross validation. One result for each replicate. This output is mainly expected to be used to give more details of an eventual problem during cross validation. 2013-01-09 11:39:41.170 UTC answer0 This is here just for flow control - you can ignore this value. 2013-10-21 19:05:10.187 UTC BioSTIF_csv_data_url0BioSTIF_link0xval_threshold1mean_omission0external_omission_list1select_algorithm_and_set_parametersalgorithms_xml0algorithm_xml00 This part displays interfaces so that users can select algorithm and parameter values. 2012-12-21 17:06:58.257 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components select_algorithm_and_set_parameters 2 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeparse_csv_pointspoints_csv0first_taxon_name00points_xml00 This part is responsible for parsing the input points, determining column indexes and returning the records as a single string (same original format) without the header. 2012-12-21 14:09:07.538 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components parse_csv_points 4 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecreate_modelalgorithm_xml0presence_points_xml0mask_id0spatially_unique0environmentally_unique0species_label0srs0absence_points_xml0layers_ids0model_xml00log00full_serialized_final_model00 This part creates the XML configuration for model creation. 2012-12-21 17:11:25.20 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components create_model 10 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeshow_test_resultsstatistics_xml0answer00 This part is responsible for showing the results of the internal test. 2012-12-21 17:20:08.438 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components show_test_results 4 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_cross_validationalgorithm_xml0sentinel0testing_points0training_points0calculate_matrix0measure_auc0threshold0layers_str0mask0species_label0xval_create_model_log00xval_test_model_statistics00xval_threshold00xval_test_model_log00xval_serialized_model00 This part is responsible for performing 10-fold cross validation. 2012-12-21 17:22:28.216 UTC net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 3 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_valuesmeasure_auc0calculate_matrix0test_statistics_xml0auc11omission11 This part extracts the AUC value from all test results. 2012-12-21 17:24:11.379 UTC net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_AUC_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_available_algorithmsalgorithms_xml00 This part is reponsible for retrieving all available algorithms from the niche modelling service. 2012-12-21 14:09:53.12 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components get_available_algorithms 3 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_available_layersuse_biostif_layers0om_layers_xml00biostif_layers_xml_list11 This part is reponsible for retrieving all available layers from the niche modelling service and from the GeoServer repository at Fraunhofer. 2012-12-21 14:10:57.81 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components get_available_layers 8 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeupdate_biostif_layersbiostif_layers_xml_list1created0mask_id0new_biostif_layers_xml_list11net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity biostif_layers_xml_list 1 text/plain java.lang.String true created 0 text/plain java.lang.String true mask_id 0 text/plain java.lang.String true new_biostif_layers_xml_list 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerun_projectionsentinel0biostif_layers_xml_list1om_layers_xml0default_label0area_statistics1STIF_layerdescription1output_log1model_xml0projection_url1csvDataURI0model_layers_labels0model_layers_ids0model_mask_id0answer00STIF_layerdescription11output_log11area_statistics11projection_url11 This part is responsible for running one or more projections, including visualization of the result. 2012-12-21 17:26:25.338 UTC net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.4</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>STIF_layerdescription</name> <depth>1</depth> <translatedElementType>java.lang.Object</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>output_log</name> <depth>1</depth> <translatedElementType>java.lang.Object</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>projection_url</name> <depth>1</depth> <translatedElementType>java.lang.Object</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>area_statistics</name> <depth>1</depth> <translatedElementType>java.lang.Object</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>answer</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>STIF_layerdescription</name> <depth>1</depth> <granularDepth>1</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>output_log</name> <depth>1</depth> <granularDepth>1</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>projection_url</name> <depth>1</depth> <granularDepth>1</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>area_statistics</name> <depth>1</depth> <granularDepth>1</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + ! answer.equals("no"); if ("true".matches(loop)) { Thread.sleep(200); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeupload_csv_datacsvDataContent0csvDataURI00dataUploadOK11 This part is responsible for uploading the species occurrence points to the BioSTIF service. 2013-01-11 11:30:05.84 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components biostif_upload_points 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeshow_projectionscsvDataURI0user_layer_definition0csvResultData00 This part is responsible for displaying the projections in BioSTIF. 2013-01-11 16:24:03.431 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components biostif_show_projections 4 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1seperator0concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecommavalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity , net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeempty_listempty_list11net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity empty_list 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedecide_cross_validationsentinel0presence_points_xml0flag11calculate_matrix00measure_auc00threshold00training_points_xml11testing_points_xml11 This part is responsible for deciding about external test. 2013-11-18 12:56:40.178 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components configure_external_test 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemake_biostif_urlseperator0stringlist1csv_url0concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true csv_url 0 text/plain java.lang.String true concatenated 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge UserNameHere 2015-06-11 13:26:46.163 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecalculate_mean_omissionvalues_list1mean_value00 This part calculates the mean omission value from the cross validation. 2013-12-01 13:03:17.762 UTC net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_omission_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecalculate_mean_aucvalues_list1mean_value00 This part calculates the mean AUC value from the cross validation. 2013-12-01 13:03:35.546 UTC net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeflatten_cross_validation_outputsxval_test_model_log2xval_threshold2xval_test_model_statistics2xval_serialized_model2xval_create_model_log2xval_test_model_log11xval_test_model_statistics11xval_create_model_log11xval_threshold11net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemask_interface_captionvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Select or create an input mask to filter points and environmental data during model creation net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketerminateinput0 This script was created as a workaround to a Taverna 2.4 bug. It is used to receive the output of a nested workflow, so that the nested workflow terminates. 2014-01-29 12:48:47.251 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity input 0 text/plain java.lang.String true workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketest_modelpresence_points_xml0model_xml0mask_id0species_label0srs0threshold0calculate_roc0calculate_matrix0absence_points_xml0num_background_points0layers_ids0statistics_xml00log00net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components test_model 11 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedefine_frequently_used_constantsno00latlong_wgs84000_500yes00empty_string001000000net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components define_frequently_used_constants 3 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeselect_algorithm_and_set_parametersalgorithms_xmlget_available_algorithmsalgorithms_xmlparse_csv_pointspoints_csvremove_possible_BOMsOutcreate_modelalgorithm_xmlselect_algorithm_and_set_parametersalgorithm_xmlcreate_modelpresence_points_xmlparse_csv_pointspoints_xmlcreate_modelmask_idinput_mask_selectionmask_idcreate_modelspatially_uniquedefine_frequently_used_constantsnocreate_modelenvironmentally_uniquedefine_frequently_used_constantsnocreate_modelspecies_labelparse_csv_pointsfirst_taxon_namecreate_modelsrsdefine_frequently_used_constantslatlong_wgs84create_modelabsence_points_xmldefine_frequently_used_constantsempty_stringcreate_modellayers_idsselect_layersselected_layers_idsshow_test_resultsstatistics_xmltest_modelstatistics_xmlrun_cross_validationalgorithm_xmlselect_algorithm_and_set_parametersalgorithm_xmlrun_cross_validationsentineldecide_cross_validationflagrun_cross_validationtesting_pointsdecide_cross_validationtesting_points_xmlrun_cross_validationtraining_pointsdecide_cross_validationtraining_points_xmlrun_cross_validationcalculate_matrixdecide_cross_validationcalculate_matrixrun_cross_validationmeasure_aucdecide_cross_validationmeasure_aucrun_cross_validationthresholddecide_cross_validationthresholdrun_cross_validationlayers_strselect_layersselected_layers_idsrun_cross_validationmaskinput_mask_selectionmask_idrun_cross_validationspecies_labelparse_csv_pointsfirst_taxon_nameextract_valuesmeasure_aucdecide_cross_validationmeasure_aucextract_valuescalculate_matrixdecide_cross_validationcalculate_matrixextract_valuestest_statistics_xmlflatten_cross_validation_outputsxval_test_model_statisticsFlatten_AUC_Listinputlistextract_valuesaucget_available_layersuse_biostif_layersuse_biostif_layersupdate_biostif_layersbiostif_layers_xml_listget_available_layersbiostif_layers_xml_listupdate_biostif_layerscreatedinput_mask_selectioncreatedupdate_biostif_layersmask_idinput_mask_selectionmask_idrun_projectionsentinelshow_test_resultsanswerrun_projectionbiostif_layers_xml_listupdate_biostif_layersnew_biostif_layers_xml_listrun_projectionom_layers_xmlget_available_layersom_layers_xmlrun_projectiondefault_labelparse_csv_pointsfirst_taxon_namerun_projectionarea_statisticsempty_listempty_listrun_projectionSTIF_layerdescriptionempty_listempty_listrun_projectionoutput_logempty_listempty_listrun_projectionmodel_xmlcreate_modelmodel_xmlrun_projectionprojection_urlempty_listempty_listrun_projectioncsvDataURIupload_csv_datacsvDataURIrun_projectionmodel_layers_labelsselect_layersselected_layers_labelsrun_projectionmodel_layers_idsselect_layersselected_layers_idsrun_projectionmodel_mask_idinput_mask_selectionmask_idupload_csv_datacsvDataContentremove_possible_BOMsOutshow_projectionscsvDataURIupload_csv_datacsvDataURIshow_projectionsuser_layer_definitionMerge_String_List_to_a_StringconcatenatedMerge_String_List_to_a_Stringstringlistrun_projectionSTIF_layerdescriptionMerge_String_List_to_a_Stringseperatorcommavaluedecide_cross_validationsentinelshow_test_resultsanswerdecide_cross_validationpresence_points_xmlparse_csv_pointspoints_xmlmake_biostif_urlseperatorcommavaluemake_biostif_urlstringlistrun_projectionSTIF_layerdescriptionmake_biostif_urlcsv_urlupload_csv_datacsvDataURIcalculate_mean_omissionvalues_listFlatten_omission_ListoutputlistFlatten_omission_Listinputlistextract_valuesomissioncalculate_mean_aucvalues_listFlatten_AUC_Listoutputlistflatten_cross_validation_outputsxval_test_model_logrun_cross_validationxval_test_model_logflatten_cross_validation_outputsxval_thresholdrun_cross_validationxval_thresholdflatten_cross_validation_outputsxval_test_model_statisticsrun_cross_validationxval_test_model_statisticsflatten_cross_validation_outputsxval_serialized_modelrun_cross_validationxval_serialized_modelflatten_cross_validation_outputsxval_create_model_logrun_cross_validationxval_create_model_logterminateinputshow_projectionscsvResultDataselect_layersbiostif_layers_xml_listget_available_layersbiostif_layers_xml_listselect_layersom_layers_xmlget_available_layersom_layers_xmlselect_layersom_skip_labelsskip_labels_in_layer_selectionvalueselect_layersinterface_captionselect_layers_captionvalueinput_mask_selectioninterface_captionmask_interface_captionvalueinput_mask_selectionbiostif_layers_xml_listget_available_layersbiostif_layers_xml_listinput_mask_selectionom_layers_xmlget_available_layersom_layers_xmlinput_mask_selectionselected_layers_idsselect_layersselected_layers_idsinput_mask_selectionselected_layers_labelsselect_layersselected_layers_labelsinput_mask_selectioncsvDataURIupload_csv_datacsvDataURIinput_mask_selectionom_skip_labelsskip_labels_in_mask_selectionvalueremove_possible_BOMsIninput_pointstest_modelpresence_points_xmlparse_csv_pointspoints_xmltest_modelmodel_xmlcreate_modelmodel_xmltest_modelmask_idinput_mask_selectionmask_idtest_modelspecies_labelparse_csv_pointsfirst_taxon_nametest_modelsrsdefine_frequently_used_constantslatlong_wgs84test_modelthresholddefine_frequently_used_constants0_5test_modelcalculate_rocdefine_frequently_used_constantsyestest_modelcalculate_matrixdefine_frequently_used_constantsyestest_modelabsence_points_xmldefine_frequently_used_constantsempty_stringtest_modelnum_background_pointsdefine_frequently_used_constants10000test_modellayers_idsselect_layersselected_layers_idsserialized_final_modelcreate_modelfull_serialized_final_modelcreate_final_model_logcreate_modelloginternal_test_model_logtest_modelloginternal_test_model_statisticstest_modelstatistics_xmlarea_statisticsrun_projectionarea_statisticsprojection_urlrun_projectionprojection_urlproject_model_output_logrun_projectionoutput_logmean_auccalculate_mean_aucmean_valueexternal_auc_listFlatten_AUC_Listoutputlistxval_create_model_logflatten_cross_validation_outputsxval_create_model_logxval_test_model_logflatten_cross_validation_outputsxval_test_model_logxval_test_model_statisticsflatten_cross_validation_outputsxval_test_model_statisticsanswerrun_projectionanswerBioSTIF_csv_data_urlupload_csv_datacsvDataURIBioSTIF_linkmake_biostif_urlconcatenatedxval_thresholdflatten_cross_validation_outputsxval_thresholdmean_omissioncalculate_mean_omissionmean_valueexternal_omission_listFlatten_omission_Listoutputlist 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3df51823-8edb-41e5-bc3c-1e05562e6a02 2013-01-09 23:22:10.421 UTC 3a834560-7d54-4fa9-9864-b3ddcc9b07db 2013-12-02 12:04:02.454 UTC 5092cf75-031d-4eff-84bf-5f7d8eb07cb8 2012-12-21 17:01:29.111 UTC 564d19af-1b4b-4175-bbde-93efe4203a4c 2011-11-03 15:25:29.699 UTC e2ae77aa-29fc-4e53-b4f2-c9e68a292657 2011-11-23 17:35:58.199 UTC 3c701c50-edac-45e8-9fad-65ccbb071fab 2012-12-20 16:19:29.454 UTC 10eb29ed-ab46-4b0d-a0db-918304c653ab 2011-11-23 18:57:20.905 UTC 5ba0e5ad-21a0-415a-8c2d-842d02c01785 2012-12-18 18:20:05.509 UTC b6834e54-16eb-4638-ac29-b0e647871bf9 2013-12-10 17:51:09.627 UTC d7c7116c-a791-4eed-9bf6-5f747440849f 2012-11-14 13:14:37.222 UTC 257f7030-698d-4448-aa77-3847bfd6f783 2012-05-04 10:26:08.80 UTC 9ea23947-c36e-4bab-92dd-1d229912d752 2013-01-14 17:08:42.701 UTC 5041a64e-de2e-490d-bea9-e78b292f0974 2012-03-29 13:37:00.492 UTC 353d24a7-e719-42ff-ad9a-ccbf1253ae64 2012-07-13 13:34:09.592 UTC 74be6521-ff62-46b0-9d94-b3cb708e06bc 2012-12-21 17:17:14.699 UTC 9ef1ccc8-7571-4def-ad6e-2cee9194d631 2014-03-18 19:30:30.581 UTC d12cf393-afe6-4590-aa0e-884e76d82b23 2012-12-05 11:46:26.334 UTC 9225db81-ffc3-491b-8ebb-3eb5bd75d59e 2013-05-15 13:42:27.771 UTC b7c17fb7-dc77-43a1-a76b-ff1e13f87874 2013-01-17 15:50:20.571 UTC 7373acdd-4bde-4bf1-b50c-c54e9fc62b3d 2011-11-17 17:54:15.837 UTC 6728510a-4d15-46dd-857a-aac52103ddd2 2011-11-03 14:59:25.164 UTC bfb8b1b8-0d46-4e0b-8b16-ad5110ff84f1 2012-12-21 17:09:10.780 UTC 2337d1ec-f9e3-43c1-9133-4873941dd54d 2011-11-24 16:02:12.300 UTC 17ca4797-80f7-4253-8bd0-8b2630a33c78 2012-07-13 13:59:19.909 UTC f131fea6-5645-465e-8930-cfe5c9e65ea8 2014-11-19 12:30:39.58 UTC 7fd781e1-2a1e-4fbd-8ad8-b6185807c166 2011-11-17 13:13:20.91 UTC 9f760999-c72a-4765-b6e9-fa76d3f051cb 2011-11-03 15:27:34.501 UTC 76d670da-f8db-43ed-a159-c81f990759eb 2012-12-21 17:07:02.219 UTC 314b27ef-35a1-4ab6-8fb1-fc0c1afb156f 2014-02-13 09:52:11.30 UTC 02dfb23f-6ae3-44a3-810a-c31bbc5756c8 2012-12-21 15:36:12.937 UTC 42ad0c59-e945-4710-b3a2-cc10601fd43b 2014-03-19 13:49:29.793 UTC 55d193a4-6af0-4a5b-987c-01266e2d65d3 2012-12-19 18:51:59.478 UTC 0e737955-bb56-4ebb-b10c-650452368c81 2012-12-20 17:17:27.263 UTC 07e3f128-eb89-4464-97ba-84fa59ce024c 2012-11-14 16:07:20.64 UTC 6eb9ed8f-f502-47dc-8c67-b8497bdb24ea 2013-12-06 18:22:39.975 UTC 333d2161-7fb5-46a7-94c8-083f66de57f6 2011-11-09 11:10:10.871 UTC 89f7312b-51e6-4a46-a154-3f51cd038c91 2013-12-24 11:17:01.643 UTC 9f73c0c5-a184-4c47-ad2b-5c2e0c1a750c 2014-03-18 19:11:27.818 UTC e9d03988-a16a-49a6-ab7e-9a9371638436 2013-10-11 17:22:50.757 UTC f3261c99-cfec-4d03-b809-81ed7b167033 2012-05-04 16:23:19.830 UTC f7d4d6a9-5c79-4239-90dc-fca356cd9bf7 2012-11-27 16:42:46.422 UTC b6f6766b-c496-4030-8942-48ce900f2e73 2012-11-14 16:09:36.505 UTC 824ed321-59dd-4aee-a584-cc49f3f05f9e 2012-12-20 12:45:49.375 UTC 8b659307-35e1-4672-8600-b719fa147fab 2014-03-18 19:15:36.786 UTC a1d07dc7-b611-4159-90ce-e01808bafa1c 2012-12-04 11:53:40.42 UTC 307a51ab-df22-4987-b7a0-a5e015b06757 2012-03-01 12:01:37.339 UTC 54d57f7c-0b4a-4036-b19e-dea4856c5edc 2013-01-09 11:44:38.678 UTC e6d6bf71-5207-43df-b315-3e8966128ffd 2014-04-02 23:20:57.426 UTC 9dedff5e-f858-4245-9cec-ae6b34f309df 2012-12-20 17:05:13.258 UTC 786a1117-344e-48c4-93c4-cc7ee9133546 2012-12-21 14:10:59.686 UTC 107e8227-edb5-48c7-a470-8748fd34ce67 2011-11-09 10:34:44.475 UTC 40422ed6-f181-4482-acb7-5e68adf3a97e 2012-12-21 17:25:33.951 UTC 39c3fec9-8d15-4e34-a6a2-2b0609b2b0a5 2012-07-13 13:13:36.557 UTC 5d8a83f8-6ff5-46a7-bbe2-6e7915b5debb 2013-12-24 11:39:51.465 UTC 93d385e9-3879-4ae7-9d3e-9d3c27c53522 2011-11-04 13:46:32.979 UTC 8363dd35-5bd2-4a9c-b510-df28a06ddb27 2013-01-17 11:06:50.425 UTC 28ae35d0-93cf-44fc-a2ee-3131f65da753 2013-10-03 15:14:07.759 UTC 2506d815-84f8-4b0c-a9ec-641b65a5dec3 2013-10-03 15:39:47.601 UTC 99bb57eb-14ef-4df7-bbc7-56c00f9c319d 2012-03-23 15:45:48.778 UTC 80e611da-ade0-4fcb-9b85-d245b143f960 2012-12-04 11:16:01.491 UTC 1c5eb3a6-bf94-4ff6-b0ba-e69ac1481ad2 2014-10-10 15:32:20.809 UTC c8814483-5936-4c7b-8429-fc60f2ccc83f 2013-05-15 17:15:16.951 UTC e3a1968c-a568-43c1-9302-7e8629f1cc2d 2013-01-23 16:36:06.849 UTC 756871eb-6c15-44d0-ab29-7e4f87b19256 2012-02-28 12:34:48.458 UTC 28e01873-33e1-4744-a1e6-79cf561246c1 2011-11-21 16:38:17.843 UTC fc71da12-b0c7-44df-a2dc-d4967cfe7ddc 2014-11-25 11:13:32.120 UTC 815868b7-5e4c-4a7b-98d9-36f853c1dbc2 2013-01-23 16:14:33.568 UTC 172b8da9-4072-445d-b351-80317828b3de 2012-04-27 23:01:14.681 UTC b1cd15ff-ed75-49d7-bd09-fd8e47f28fc3 2012-11-14 12:31:55.681 UTC This workflow takes as input a file containing species occurrence points to create a model with the openModeller Web Service. Algorithm, environmental layers and mask are selected during the workflow. The model is tested (internal test and optional cross validation external test) and then projected one or more times. All points from the input file are used to create a single model, even if there are differences in the scientific names. Cross validation calculates the mean AUC. Model projections can be downloaded from the links in the workflow output. They are geotiff files with suitability values ranging from 0 to 254 (nodata=255). For more information about the input file format, please check the documentation of the corresponding parameter. The default occurrence points are from a marine species called Gammarus tigrinus, so it is necessary to choose marine environmental layers during the modelling procedure to use it. Workflow requirements: When running on Taverna workbench, this workflow requires Internet connection and workbench version >= 2.5. Please note that ecological niche modelling experiments can take a long time to run depending on the parameters - sometimes several hours. This may happen with high resolution environmental layers, thousands of occurrence points and heavy algorithms, such as ANN and GARP BS. Cancelling a workflow run may not cancel the corresponding job on the server side, so if this procedure is repeated the server may get overloaded. More information and documentation about this workflow can be found here: https://wiki.biovel.eu/display/doc/Ecological+Niche+Modelling+%28ENM%29+Workflow 2014-11-25 11:45:13.402 UTC 2c744a18-b51b-4961-893f-45db09097718 2012-11-14 11:59:41.927 UTC 605f475a-aaf2-42f7-a88a-e9f43b27aa0d 2013-12-24 11:18:10.922 UTC dfe2a85b-8867-4c2e-93d8-4d5880652ec1 2011-11-21 16:54:18.653 UTC 06932682-b75e-4b62-8949-98cc21102ec4 2012-04-28 18:34:15.88 UTC a063f42b-9a47-4011-b29d-baed86ae4896 2013-01-11 12:32:10.218 UTC e2e6ed19-1527-4cb4-b284-84bb0ea1803a 2012-12-21 17:13:03.957 UTC 807b0516-3496-4bfc-a938-449859425731 2014-10-15 19:09:02.803 UTC e3dc57e9-3651-445f-93e8-8d149ecba436 2013-01-28 14:27:56.442 UTC b2423369-6ee9-4285-b15e-9c2e432931ac 2012-12-04 15:16:36.797 UTC 5cdd23ef-181d-4f06-bbdd-121739c617e7 2012-11-14 13:22:37.273 UTC 5147ff56-ed65-4a7d-8bb7-0ba607f8ddfa 2011-11-22 14:27:06.29 UTC 93846921-7590-40de-84e5-33ae3f391bfb 2013-01-14 17:03:15.535 UTC 743d7c90-ab3e-4e82-b86e-d17b42b186e6 2012-05-04 09:34:30.415 UTC 717b0c84-5c4e-4d53-ab3e-e376a0149cb8 2012-02-28 12:07:31.67 UTC Ecological niche modelling workflow 2013-10-04 09:48:57.265 UTC 23db9793-fc3c-4ade-865c-a9aa3529e3aa 2011-11-24 19:04:14.974 UTC 443b1c59-5c14-4244-a54b-80deab6bc2d1 2013-12-01 13:27:13.708 UTC 6ee4540b-5d7e-4c4d-a86e-922bb4787402 2012-12-20 17:47:08.329 UTC baf76816-b904-453a-84b7-b4e43ba0352b 2013-05-15 22:47:36.511 UTC 3bf6d8c6-9e25-4ec6-bae1-96bfa5a0cc7d 2012-03-30 13:04:48.177 UTC 5511eb20-20fd-4142-9a8f-7468113dc2cb 2013-12-24 10:38:37.905 UTC e5d6ccc7-e092-44fb-864b-14eca6471693 2013-12-24 12:36:09.731 UTC 871108ab-2884-4d9e-b29c-32db1fb61860 2011-11-03 15:53:19.894 UTC 7fa354cc-50e3-42d3-9fab-2d3acc4ba4e7 2012-12-20 13:31:11.443 UTC 4c1113dc-9800-42ad-a61f-bc8a240684f6 2013-11-19 20:50:49.900 UTC 0fe5a9e0-0841-4695-b22e-e8b410248054 2013-01-11 12:40:01.557 UTC 91eb9663-5f64-4f7c-a068-8c69d8543a5a 2013-12-02 11:49:50.491 UTC 067eb267-e588-47f9-9ca3-8d1fc6ed4586 2012-12-04 13:18:43.552 UTC 07e36802-a02e-47df-9b42-3efe828af811 2012-04-25 14:51:36.705 UTC f5934228-509a-4989-a8b5-63ba7505cb8b 2013-01-11 12:01:16.636 UTC 9563ff09-07af-4ecd-98a4-152279cbfda2 2012-05-04 10:38:32.353 UTC d409a094-032c-435d-8f0e-a3e76707db64 2013-11-30 13:30:23.908 UTC ea09fb0b-0f3a-4902-8191-f9343cdc9bb3 2014-06-25 14:43:56.28 UTC 74157dd7-d66d-4817-acf8-cabb65698b6c 2011-11-22 18:48:22.30 UTC 7dd0cd80-7fa5-4636-b38a-9177d40606c8 2012-12-04 13:00:56.585 UTC cf4ce304-45d8-4809-991f-2aec58266609 2013-01-11 11:35:15.606 UTC 24fa6150-33e4-4124-a57b-dadb6c6a06e8 2013-10-10 17:17:23.721 UTC fdd79cfe-4ba0-4302-b18a-9cb74c309eb4 2011-11-03 14:33:39.687 UTC 4fb2f7f6-aeef-4b29-a2fb-44b9a3565e4e 2013-10-03 17:38:13.855 UTC e5c5dc86-e11e-42b4-bd64-d678198a63e2 2012-12-21 18:03:20.685 UTC 1f42257c-1a2f-42ce-a372-818243f464fc 2013-12-01 13:03:50.522 UTC df4cae44-14bf-4732-abd4-c0c45cf535fc 2013-12-06 18:48:36.762 UTC 4cee8c32-5f31-47a0-ae28-678a9e975cba 2013-05-15 13:40:59.952 UTC 17a80ef5-a0ab-4245-9676-b3c45d62d087 2014-11-19 13:57:03.141 UTC c025d9a1-8af5-4b74-9199-2c7399bfd72a 2013-12-06 18:10:27.408 UTC 7184f41a-5a76-40ba-bb0b-4404cb87fab9 2012-12-20 12:18:16.650 UTC a8cb1337-fcdb-4599-8085-e55a5faded88 2012-12-21 17:18:36.23 UTC 3be29d2c-4a81-41cd-a6dc-e877f63a0abf 2013-01-23 16:48:21.818 UTC 0dd3b949-887e-4f9a-bc39-d8a6ba1c5f41 2011-11-17 15:53:20.298 UTC 2ceb8eb0-7f8b-4c78-9d50-e4be4504d7ad 2011-11-25 11:07:54.601 UTC cb33c4f6-b375-4d9f-9efb-1dc9186671ff 2012-11-14 12:17:31.16 UTC dcf982ef-7837-4603-8399-e63dc3ea117c 2013-10-04 07:47:19.992 UTC ddc970ae-57d7-42a0-b4e9-412f693f8d0d 2012-07-13 13:12:47.916 UTC 074eb4cd-83ed-4cdb-9467-149b7a56e069 2013-12-01 16:18:42.703 UTC dd878d7b-f464-4586-a11f-09f8a15830b6 2014-11-25 11:45:16.721 UTC 0170ccb4-0c0a-4909-b6eb-71db86955878 2013-12-02 16:37:06.320 UTC cb4a2773-a796-42c0-a925-b4663e59f61f 2011-11-17 14:11:30.4 UTC 5c2816fa-1238-4666-8c4b-7b342e8eef30 2012-12-05 11:37:48.97 UTC 081e5e9e-f75b-407d-817f-54d6923ed086 2014-10-10 15:00:29.960 UTC 8a39a705-197d-4bc6-841a-08430ce89151 2012-04-02 09:34:47.603 UTC 7744f688-713b-40f1-ba27-0288187e73cc 2013-11-30 13:27:02.751 UTC bf9d15ea-045f-40d4-8842-a7b0808a7f14 2012-07-13 13:04:11.174 UTC 01d434ca-bd7a-49c3-933f-8f55b10144d6 2013-12-06 12:23:04.967 UTC 90b84c54-03c0-4ab9-a08f-cab64255420b 2013-11-19 15:53:26.624 UTC ee4c3406-93df-4435-92be-fcf4002f5f98 2011-11-23 17:18:20.342 UTC b0d208a8-adde-43f3-b78b-3daea6b9897c 2012-12-20 17:38:53.549 UTC fc69ec24-8518-4855-b436-4afa3b2a1d7a 2012-04-25 14:38:43.550 UTC ad06ee8e-7639-4f64-8469-301d1864cbc5 2011-11-09 12:22:57.601 UTC db7c0623-c024-4d2f-8a3b-7017503eb091 2012-12-04 12:38:06.928 UTC c1b45776-1dcf-4353-8522-e8089dcd4ea2 2011-11-09 14:21:05.369 UTC 0b7f1c84-fbd9-41a0-b015-bda73e95fb40 2012-12-04 11:23:11.367 UTC 3cee0e28-d3b9-485b-8022-3478b8aad9c6 2014-02-13 09:52:57.15 UTC 61156f32-8a7a-4b12-bdcb-602402b9d0c2 2013-11-18 12:56:45.998 UTC a6879fb4-7d70-4721-902f-3d4f7361793d 2014-10-10 15:01:22.742 UTC 9b77f598-db14-4915-bed0-43a1b72b550d 2013-10-03 18:13:34.539 UTC 586f8ce9-85fe-4ac2-b466-74742f93dc42 2013-12-01 14:42:32.611 UTC 771fea2a-4d51-4369-9646-b16737fa755a 2012-05-11 13:44:45.853 UTC 53ac829c-49dd-4972-8cdc-5b921399dc80 2012-07-13 13:06:17.714 UTC 553034fb-8f3d-4aef-9ecc-144af394f520 2012-12-20 21:18:03.637 UTC cceae07a-e65a-4cbe-be3c-dec935cc0e77 2013-05-15 20:29:06.6 UTC 00575d56-1f49-4f96-ba75-7d7894c76ba0 2012-07-13 13:56:37.232 UTC 8fd44ec3-6db8-4d1f-8be5-dea7131f75d9 2013-10-11 17:09:47.620 UTC 35f41e15-4d8d-40fe-8ca8-eca78b66d16e 2012-12-20 14:02:12.536 UTC 0d01af1b-4a5b-4576-9ca7-1db78ebca95b 2013-12-10 17:26:31.308 UTC 21a62748-ce9a-499f-a8c9-9bd767067945 2012-04-28 19:25:38.447 UTC 11d0cc71-5734-4bd5-931e-98b00a29e122 2013-05-15 17:13:50.855 UTC 83e84a44-82cb-4e19-8e1b-75ba4ba7e19d 2013-01-24 13:34:40.680 UTC f64e9105-04e5-4848-ab8e-3ed6084d5ed5 2012-07-13 12:51:13.205 UTC 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15210d0c-a09e-4d6d-87f8-58587fd4ebce 2012-07-13 13:11:48.703 UTC 7ac0f945-c806-4867-b7b7-b28c88f3f195 2013-10-15 15:06:35.560 UTC bfd0fbc3-fa8e-4cdf-aaf6-ef76a3d57bd2 2011-11-07 18:40:32.173 UTC d47be1f5-b6a5-4af3-8d96-6207705771a6 2012-07-13 13:31:15.199 UTC dc814e13-1706-4c8c-b265-04df36937181 2014-10-24 16:51:55.348 UTC 2cb52284-7600-44b0-b305-3854c63c1077 2012-03-28 15:18:24.299 UTC bb9125d2-c93f-4c19-8b77-47daf573fd3e 2013-10-04 07:48:18.664 UTC 4867de97-14df-481c-b6c7-f8219bca1cd1 2013-01-24 13:21:55.380 UTC 4d9997a9-1268-488f-bb39-b8d14735a53d 2014-12-04 12:14:31.318 UTC 4a154305-7bc1-4c05-a9cd-aecbf9a10f1b 2012-05-04 07:54:46.245 UTC dfefa5a0-409e-416d-acd0-0b5f6b6de873 2011-11-28 10:50:48.347 UTC ec5c38d0-7eef-4b5d-8b52-6fccd1573977 2013-06-20 16:58:03.396 UTC 48be13ee-706d-470d-8d35-cd8423758270 2012-05-04 10:42:23.636 UTC 165732fd-12da-4665-8a51-00d57baf11b3 2011-11-25 11:10:31.303 UTC 77e6b6e7-df8f-46a2-80ac-ad9e21616ec6 2011-11-24 18:44:47.417 UTC 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a4db098b-c6a3-4ce5-a613-75f0a03344be 2015-03-26 19:49:48.958 UTC 8a1430ab-7277-40d3-80a1-db95272865dd 2011-11-17 12:55:28.437 UTC ce248323-9af4-42ce-a822-e0f05e3ce6ac 2013-10-10 19:46:33.131 UTC 07f372e1-331a-43b1-95e5-f1f9d633c1d2 2011-11-24 15:57:55.899 UTC c6a71ffa-6746-48ec-b666-42ce024f3604 2012-12-21 14:09:55.945 UTC f12f24dd-b025-4461-8997-cfa4990b6147 2013-12-06 12:11:14.338 UTC 38deff56-a0c4-4b00-bad3-f02ed2aaf74d 2012-07-13 13:22:09.737 UTC 27eaa436-66ca-48fd-a4e9-560280a81f69 2011-11-21 14:39:32.36 UTC 41d30e9c-a411-487c-ae94-89374dccd030 2012-12-20 17:56:31.850 UTC 004cb391-3835-4447-a3a6-340ed7815868 2013-12-06 12:25:15.458 UTC c32da442-7cf8-4061-953a-9908b798e760 2011-11-07 11:54:30.715 UTC 59ffa5d9-6915-4312-9620-6cec2bd4fb23 2012-05-04 15:00:00.624 UTC 9506d818-2da0-4e8e-ad1c-a91cf72fc161 2011-11-08 15:55:04.831 UTC 650501cc-aee7-4b26-b884-7b5d8010ec3b 2013-12-01 12:18:29.588 UTC 718d9b1d-beac-4a92-9422-7a062c58a831 2012-12-20 18:08:10.614 UTC 0a7966e1-588e-4980-aae0-4b9a848ca6ee 2011-11-21 18:50:05.812 UTC 773a7b76-549e-4c3a-ac4f-cada83a09061 2014-03-18 19:09:25.224 UTC 5043c1bc-0628-4c40-b4c9-b81d89392528 2011-11-24 15:27:22.908 UTC 0fd24c22-82c1-4b0b-842f-3ea7030a828b 2011-11-22 18:40:39.881 UTC 838ce7df-f5ac-49af-9cfc-517047797329 2013-10-10 17:12:48.639 UTC 9d5f044a-b7a8-48e8-9287-4ffb23517b4b 2014-11-19 12:29:39.418 UTC b7e2d7e2-c90b-4f54-a65e-b046f42d9a7e 2011-11-17 17:42:45.593 UTC 84017c76-6664-43b7-ab1b-80a2ef539cdd 2013-10-10 15:28:03.741 UTC 5590aa5e-6aef-40ed-baed-0432e81dfa78 2013-10-11 18:01:43.617 UTC 99ccee4f-bee2-4c0c-bef6-e05cce16ed70 2013-04-18 19:23:14.673 UTC 6ca36b22-84ec-40b3-b090-88245ad414fb 2013-10-03 18:19:31.169 UTC e9ceb83b-7d35-4fef-b559-14638536af44 2012-07-13 13:32:03.154 UTC 770670ad-bbca-44bd-b4e3-422764d3f142 2014-03-18 18:05:14.489 UTC 4167da3f-4e8b-4635-a274-20aac25516aa 2013-10-04 08:24:52.757 UTC f37c4e23-dca5-44bc-80b5-d854f6309417 2012-12-20 17:49:50.975 UTC eb867bb4-bc9d-48a0-8071-9968f2537bfa 2013-12-10 17:55:31.713 UTC ed15704b-218e-47c4-baaa-0f0124316c5f 2013-01-17 11:35:04.760 UTC 529144fb-782b-4c99-830e-6c39fb954f4b 2013-10-03 18:24:16.656 UTC Calculate_mean_AUCvalues_list11mean_value0calculate_meanvalues_list1mean_value00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity values_list 1 text/plain java.lang.String true mean_value 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecalculate_meanvalues_listvalues_listmean_valuecalculate_meanmean_value Renato De Giovanni 2012-12-21 17:24:51.301 UTC Calculate the mean AUC value from the cross validation. 2012-12-21 17:25:28.975 UTC 010615d2-f040-4d3d-a261-4e426188e6e3 2012-11-29 19:32:39.740 UTC bd5e611e-847b-44a3-ab1b-9174eb97cdf4 2012-12-21 17:25:30.691 UTC 58c67563-85ea-4457-9c1a-0f0813466988 2012-11-29 19:39:01.26 UTC 1366279a-c75a-4a32-bbd2-4294b536a59c 2012-11-29 19:55:34.1 UTC ce41aa28-5f3a-4c35-a27c-60955603ef6a 2013-12-01 12:56:00.906 UTC 612834f5-dc64-4d22-985f-d6d7ef0e121e 2012-11-30 17:39:59.970 UTC Calculate mean AUC 2012-12-21 17:24:58.430 UTC 3fd79a91-0317-4ac1-8f4f-7d0d135a604e 2012-11-30 17:25:24.8 UTC 7870a186-16ae-42c1-97cd-49bb516fa14a 2013-12-02 16:21:51.428 UTC 2ae5bb07-fac0-4e18-8355-c38ffb26a610 2012-11-30 18:13:56.696 UTC a0388439-ad97-4c5d-bddf-211889113db2 2012-11-30 17:24:48.969 UTC Calculate_mean_AUCvalues_list11mean_value0calculate_meanvalues_list1mean_value00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity values_list 1 text/plain java.lang.String true mean_value 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecalculate_meanvalues_listvalues_listmean_valuecalculate_meanmean_value Calculate mean AUC 2012-12-21 17:24:58.430 UTC bd5e611e-847b-44a3-ab1b-9174eb97cdf4 2012-12-21 17:25:30.691 UTC 3fd79a91-0317-4ac1-8f4f-7d0d135a604e 2012-11-30 17:25:24.8 UTC Renato De Giovanni 2012-12-21 17:24:51.301 UTC a0388439-ad97-4c5d-bddf-211889113db2 2012-11-30 17:24:48.969 UTC ce41aa28-5f3a-4c35-a27c-60955603ef6a 2013-12-01 12:56:00.906 UTC 010615d2-f040-4d3d-a261-4e426188e6e3 2012-11-29 19:32:39.740 UTC Calculate the mean AUC value from the cross validation. 2012-12-21 17:25:28.975 UTC 06a31f7f-0557-4b14-8aad-2de4ef500fa6 2013-12-02 16:22:16.276 UTC 2ae5bb07-fac0-4e18-8355-c38ffb26a610 2012-11-30 18:13:56.696 UTC 1366279a-c75a-4a32-bbd2-4294b536a59c 2012-11-29 19:55:34.1 UTC 612834f5-dc64-4d22-985f-d6d7ef0e121e 2012-11-30 17:39:59.970 UTC 58c67563-85ea-4457-9c1a-0f0813466988 2012-11-29 19:39:01.26 UTC Run_projectionsmodel_xml00sentinel00model_layers_ids00model_layers_labels00model_mask_id00om_layers_xml00biostif_layers_xml_list11default_label00projection_url11area_statistics11STIF_layerdescription11output_log11csvDataURI00 Link to species occurrence points after upload in BioSTIF. 2013-12-10 16:41:49.150 UTC area_statistics1projection_url1output_log1answer0STIF_layerdescription1upload_projectionworkspace0raster_format0raster_style0sourceURL0layerLabel0STIF_layerdescription00 Upload the projection in GeoServer. 2012-12-21 17:30:12.944 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components biostif_upload_raster 4 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedefault_workspacevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity biovel_temp net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeproject_modelmodel_xml0output_format0cell_statistics_threshold0mask_id0layers_ids0log00raster_url00area_statistics_xml00 Run the projection. 2012-12-21 17:29:56.923 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components project_model 9 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeraster_formatvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity GeoTIFF net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeraster_stylevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity tiff_raster_color net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeask_useranswer00net.sf.taverna.t2.activitiesinteraction-activity1.5net.sf.taverna.t2.activities.interaction.InteractionActivity answer 0 0 http://biovel.github.io/enm/continue.html LocallyPresentedHtml false net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeappend_valuesstif_layer0img_url0area_statistics0projection_log0in_logs1in_statistics1in_stif_layers1in_urls1out_stif_layers11out_urls11out_logs11out_statistics11net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity projection_log 0 text/plain java.lang.String true in_logs 1 text/plain java.lang.String true img_url 0 text/plain java.lang.String true in_urls 1 text/plain java.lang.String true area_statistics 0 text/plain java.lang.String true in_statistics 1 text/plain java.lang.String true stif_layer 0 text/plain java.lang.String true in_stif_layers 1 text/plain java.lang.String true out_logs 1 1 out_urls 1 1 out_statistics 1 1 out_stif_layers 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemask_interface_captionvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Select or create an output mask to delimit the projection net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGreyTiffvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity GreyTiff net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke0.5value00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0.5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeselect_matching_layersloop_list1om_layers_xml0biostif_layers_xml_list1selected_layers_labels0selected_layers_ids0default_label0display_label_field0interface_caption0selected_layers_ids00selected_layers_labels00projection_label00 Select projection layers. 2014-03-18 19:55:23.272 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components select_matching_layers 5 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedisplay_label_fieldvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity yes net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeselect_layers_captionvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity New projection net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeskip_labels_in_mask_selectionvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.5net.sf.taverna.t2.activities.stringconstant.StringConstantActivity terrestrial marine CIAT WorldClim-Bioclim net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeoutput_mask_selectionom_skip_labels0biostif_layers_xml_list1om_layers_xml0csvDataURI0interface_caption0selected_layers_labels0selected_layers_ids0mask_id00 Select output mask. 2014-03-19 13:46:15.167 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components select_or_create_mask 7 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeupload_projectionworkspacedefault_workspacevalueupload_projectionraster_formatraster_formatvalueupload_projectionraster_styleraster_stylevalueupload_projectionsourceURLproject_modelraster_urlupload_projectionlayerLabelselect_matching_layersprojection_labelproject_modelmodel_xmlmodel_xmlproject_modeloutput_formatGreyTiffvalueproject_modelcell_statistics_threshold0.5valueproject_modelmask_idoutput_mask_selectionmask_idproject_modellayers_idsselect_matching_layersselected_layers_idsappend_valuesstif_layerupload_projectionSTIF_layerdescriptionappend_valuesimg_urlproject_modelraster_urlappend_valuesarea_statisticsproject_modelarea_statistics_xmlappend_valuesprojection_logproject_modellogappend_valuesin_logsoutput_logappend_valuesin_statisticsarea_statisticsappend_valuesin_stif_layersSTIF_layerdescriptionappend_valuesin_urlsprojection_urlselect_matching_layersloop_listprojection_urlselect_matching_layersom_layers_xmlom_layers_xmlselect_matching_layersbiostif_layers_xml_listbiostif_layers_xml_listselect_matching_layersselected_layers_labelsmodel_layers_labelsselect_matching_layersselected_layers_idsmodel_layers_idsselect_matching_layersdefault_labeldefault_labelselect_matching_layersdisplay_label_fielddisplay_label_fieldvalueselect_matching_layersinterface_captionselect_layers_captionvalueoutput_mask_selectionom_skip_labelsskip_labels_in_mask_selectionvalueoutput_mask_selectionbiostif_layers_xml_listbiostif_layers_xml_listoutput_mask_selectionom_layers_xmlom_layers_xmloutput_mask_selectioncsvDataURIcsvDataURIoutput_mask_selectioninterface_captionmask_interface_captionvalueoutput_mask_selectionselected_layers_labelsselect_matching_layersselected_layers_labelsoutput_mask_selectionselected_layers_idsselect_matching_layersselected_layers_idsarea_statisticsappend_valuesout_statisticsprojection_urlappend_valuesout_urlsoutput_logappend_valuesout_logsanswerask_useranswerSTIF_layerdescriptionappend_valuesout_stif_layers Renato De Giovanni 2012-12-21 17:26:45.182 UTC cba6059c-8684-4606-bbc8-98e6c05e6dae 2013-01-14 15:45:28.198 UTC 2e451371-0d48-4461-9a88-5185e7030279 2013-10-03 17:48:32.222 UTC a46ccf67-e687-4ec6-9407-b694ea60cfd5 2014-12-04 12:19:34.830 UTC ed40d168-95f4-48f0-b841-2f0020dd920e 2012-12-21 10:05:15.160 UTC 07fb21f1-70a3-484b-ad4e-a59fc5b015b4 2013-01-23 16:48:10.707 UTC bce6896f-6bf1-4065-a92b-5d54a17c3217 2013-02-14 16:19:20.612 UTC 93c8da6e-8022-48e8-9c56-3f9f7ae264fe 2014-02-13 09:47:54.961 UTC e537db91-8ebb-416b-9fea-15f90147b125 2014-11-19 14:01:02.70 UTC b0836ce0-434f-4214-9985-30c77a844431 2014-10-22 18:27:48.759 UTC b6b636d5-a0c2-4c12-85f7-e3444b0dd1a6 2012-12-20 17:04:46.441 UTC 01d33903-db4a-4ad1-af8f-d7989bce49b2 2014-12-04 12:46:55.691 UTC Run projections 2012-12-21 17:26:50.767 UTC 8b33fdc9-a3da-49b4-9d47-111b2e96249f 2013-10-03 17:36:49.754 UTC c82d1078-7ae7-4666-9f92-e5a1dab16c4f 2013-10-21 19:03:37.427 UTC 0933e5e5-c43b-4ebd-8e3e-27fb4a2c79d7 2013-10-15 15:11:53.507 UTC 86f408bc-99d1-44f9-b6de-80ee68a1f2e1 2013-10-11 18:00:42.325 UTC 5a7f54d4-6a77-4f8a-a9b3-9ef4c831eccc 2012-12-21 18:03:15.69 UTC dcc64df3-71dc-4f0e-a143-bff5bb590ac9 2013-05-15 16:39:37.462 UTC d52d4a63-4036-4e0c-913e-f0d6ecf960e5 2013-05-15 17:15:08.715 UTC 0363980c-e282-44e2-894a-d1954f7fe496 2013-10-03 18:24:04.496 UTC ee3fc6ef-5d7f-40df-b9d0-0ee11aa60d5f 2012-12-20 17:17:20.461 UTC 1d099720-a855-49d2-b2c8-6c021089ff06 2013-05-15 16:45:27.20 UTC 4a5b08bf-4135-4a85-a090-b9582ce58647 2013-01-11 16:23:26.287 UTC e5b10980-df6d-4b31-a2d3-4390695691b7 2013-06-20 16:51:29.509 UTC 7d171c7f-e8c7-4562-94e5-83b7c3c176dc 2013-01-24 13:42:47.518 UTC 933d8f76-0dc9-4e81-84f2-79183485bcab 2013-06-20 16:49:37.906 UTC 7f24fb2a-5945-4aea-87d0-c6379985d167 2013-12-10 16:54:50.875 UTC 7cce6936-23af-429b-8a2a-8c3d6d694e49 2014-10-10 15:07:27.448 UTC 163c9933-1301-4459-aa8e-939e1fff5035 2012-12-20 20:51:35.464 UTC 20e96f95-60a4-4ea0-a904-177f8bfc7661 2014-03-19 13:49:21.41 UTC ea2cb45e-d2d3-4037-977d-1ebd85946c34 2013-01-09 18:36:10.271 UTC 3e05733d-df9e-410f-b378-4eca21519c79 2012-12-20 18:08:02.377 UTC f4cd1874-6fca-4756-93de-57f8e8c473e4 2012-12-20 17:16:15.407 UTC e8df5122-06c0-4588-ae6a-5aaf3b4fa029 2013-12-24 10:38:24.661 UTC 76715249-b460-4d51-803e-56ccadbfb68f 2014-10-10 15:00:25.522 UTC c5cd2718-aeff-4730-818f-30bf6632a67c 2012-12-20 18:01:01.562 UTC 1d6134ae-d74b-4749-ba47-0c240a4fbf0f 2013-10-09 16:38:41.559 UTC 0fd5d8cb-d6bc-4703-a8f5-109b773092ea 2013-01-14 16:35:43.931 UTC 0d15305f-8d69-43c7-b377-9667aa9e4f9c 2014-11-25 11:13:25.730 UTC 8394eb07-92c1-4d44-9d0a-c1370af36c22 2013-05-15 13:42:21.442 UTC 82fe12d6-feff-4df8-bfc7-df4ab0682579 2013-01-14 16:59:48.710 UTC 61b883ab-9486-4cc0-877c-cdafdd051cd6 2015-04-04 21:02:04.336 UTC 4f09cda4-c611-472f-ab66-ad1984317ed9 2013-01-24 13:30:10.925 UTC 38442ff5-b87c-43da-a09d-fc01c95ec3e0 2013-01-10 15:29:53.307 UTC 6ece4e87-35fc-4913-8573-508346c133fe 2013-01-09 22:28:50.786 UTC ab8e9fa2-73af-45c0-9b18-463ebe6613c3 2013-12-24 10:37:33.896 UTC 873f6ccd-dbe0-4f1f-8140-10f3931d7a77 2013-12-10 16:41:53.268 UTC c226fbc8-b5f1-457e-8643-59b7f83cdbd8 2013-01-25 21:50:50.581 UTC 427f35c4-487b-4038-9dce-b4ffc857d421 2015-04-04 21:13:45.382 UTC 7355c79c-b241-4a5d-8d77-13922cf6ff97 2012-12-21 17:27:54.836 UTC 250f2781-6829-4a50-914b-062484ecc754 2012-12-21 15:32:40.313 UTC c76ee519-9d75-4bea-99d5-b1dc537d0837 2013-12-24 10:51:45.254 UTC Run a projection, allowing users to select projection layers and output mask. The result is displayed on a web page and also on BioSTIF. 2012-12-21 17:27:52.699 UTC 830804d1-5c40-499a-84d8-0eb0ba41330f 2013-10-11 18:22:42.444 UTC e498f037-5c19-4a45-9920-1dfda073fa65 2013-01-14 16:12:04.942 UTC e11b2b35-d05b-48c4-90f2-8b5904a6f8b9 2013-12-24 11:00:20.769 UTC ad1efcf2-898a-46ea-9973-97ac7e08ca1c 2013-12-24 11:08:47.182 UTC 9e1f39c7-3e13-499d-a19c-96e901db2361 2012-12-20 16:16:02.621 UTC 92c12a4a-6ac1-4570-91a2-9dc84c6f8bc5 2013-01-23 16:57:38.804 UTC 4fbb71f5-5f79-4e95-a097-e8a0941229d8 2013-01-09 11:31:06.338 UTC 80b89cdd-0139-432c-ab83-6eded86463f7 2012-12-20 16:08:14.10 UTC 2941440e-8f01-47cc-96bd-daaada52bb30 2012-12-20 20:58:48.359 UTC bf2d6fc0-d241-42e5-8f17-69b41e4fbc00 2013-01-17 11:47:57.225 UTC 67e2ac78-2338-4f9c-a9d3-8d6a1d7dfba3 2013-12-06 18:46:54.355 UTC cf7cc2b1-a3ba-486a-84e6-987a7759b6ad 2013-10-11 18:03:52.548 UTC 7cfab997-0f2a-48c4-88da-25f1e617a441 2013-01-14 16:32:56.660 UTC 59e5c5ee-af04-4296-a7e9-4d500b160a9b 2014-03-18 19:58:37.921 UTC a4570877-95ef-4f2e-b5ce-80bd41abf9bc 2013-10-04 07:53:16.834 UTC e8acac2e-e29f-42dd-b877-ddb7f2dd6767 2014-12-04 16:35:51.834 UTC ded52483-92bd-4b0a-a02d-8ada31be54c1 2012-12-21 09:55:52.213 UTC 10a3251b-22d6-4d96-9c15-b70f8f19e3ee 2012-12-20 17:11:53.760 UTC 71314a2b-aa39-4d77-af30-35cf5c106a4c 2013-01-23 16:12:03.182 UTC de4549a1-0dfa-4051-a3e4-c39d0893c4ee 2013-01-09 23:21:50.997 UTC fdf84139-5e6e-44d2-a239-f98db2839f3f 2013-01-11 16:01:53.335 UTC 0a4a64e7-36e3-4778-abb3-828adc0c6efb 2013-12-24 10:44:42.595 UTC 51750d7b-ddc6-4969-b820-155508906fdb 2013-07-11 08:48:15.687 UTC 01475c3b-388b-42cf-bb2c-b55d309bfc98 2013-04-18 19:23:07.334 UTC 716805c7-c8e6-4fa9-861a-9a26c2b51de8 2012-12-20 17:46:54.569 UTC 5e6d3ea9-c880-4d56-9a99-1576d51dfab5 2014-03-18 19:55:57.527 UTC Workflow60test_statistics_xml00flag00omission1extract_omissionxml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.5net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0"> <ConfusionMatrix Accuracy="100" CommissionError="-100" FalseNegatives="0" FalsePositives="0" OmissionError="0" Threshold="0.5" TrueNegatives="0" TruePositives="55"/> <RocCurve Auc="0.9977500000000000257571742" NumBackgroundPoints="10000" Points="0 0 0 0 0.004499999999999999659994199 1 0.006700000000000000226207941 1 0.008000000000000000166533454 1 0.008899999999999999925059946 1 0.01030000000000000012767565 1 0.01140000000000000041078252 1 0.01220000000000000077438056 1 0.01269999999999999948374629 1 0.01329999999999999932276395 1 0.01499999999999999944488849 1 0.01629999999999999851785226 1 0.01820000000000000089928065 1 0.02220000000000000098254738 1 1 1"/></Statistics> /default:Statistics/default:ConfusionMatrix/@OmissionError default http://openmodeller.cria.org.br/xml/2.0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_omissionxml_texttest_statistics_xmlomissionextract_omissionnodelist 3ee66921-34df-4b39-bb80-ba9ff7d7db3c 2013-12-01 13:14:29.419 UTC e556e5fe-3835-4ab9-8334-1ffe7714e5a0 2013-12-01 13:13:10.934 UTC 9fc85275-6236-4888-bc2d-33e72363df0d 2013-12-01 13:12:41.636 UTC d190945b-3171-44d9-8235-bcd4630ace00 2013-12-01 13:24:47.723 UTC Workflow143srs00flag00threshold00model_xml00species_label00mask_id00layers00presence_points_xml00absence_points_xml00output_threshold0calculate_thresholdmodel_values0threshold0threshold_value00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity model_values 0 text/plain java.lang.String true threshold 0 text/plain java.lang.String true threshold_value 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeevaluate_modelsrs0model_xml0species_label0mask_id0presence_points_xml0absence_points_xml0layers_ids0model_values00 This part is responsible for testing a model. 2013-10-15 14:52:39.817 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components evaluate_model 9 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecalculate_thresholdmodel_valuesevaluate_modelmodel_valuescalculate_thresholdthresholdthresholdevaluate_modelsrssrsevaluate_modelmodel_xmlmodel_xmlevaluate_modelspecies_labelspecies_labelevaluate_modelmask_idmask_idevaluate_modelpresence_points_xmlpresence_points_xmlevaluate_modelabsence_points_xmlabsence_points_xmlevaluate_modellayers_idslayersoutput_thresholdcalculate_thresholdthreshold_value 0cfaf122-7892-4cdc-93df-31c5e27dacf2 2013-11-29 18:26:10.861 UTC 77f2529b-4a3a-461c-afb3-d02c61526665 2013-11-29 18:32:26.29 UTC f6252b8a-2d72-4bf8-bd8b-c0c661402449 2013-12-01 12:36:30.758 UTC d1dd86ea-6724-4a8d-8530-e7ee3f6d7195 2014-02-13 09:51:47.433 UTC 55b0f514-7dde-4874-b49b-064636497696 2013-12-10 17:50:13.779 UTC 86a1cf91-5c91-4f62-a220-f1959da774ac 2014-11-19 13:55:56.103 UTC fa13de6e-1d52-4c9a-b2d1-17954931c5e6 2013-11-29 18:27:37.894 UTC 26dc2a9b-cad9-4d01-86db-4e3699a69ba6 2013-11-29 18:26:42.847 UTC 847a7bca-e2f3-4551-acbf-15a3ffa2a22b 2013-11-30 13:59:12.375 UTC 2c393501-fa2c-4b5c-96a5-7650700d9ad1 2013-11-29 18:29:39.558 UTC 3f204456-9a90-42ce-8078-d4e7740514f5 2013-12-01 13:32:14.439 UTC c7828f38-1b12-4fdd-be40-f4a4d6c18282 2014-12-04 12:40:30.452 UTC 15efa7ea-b355-4199-8eff-f85277019285 2013-12-01 14:40:33.253 UTC 452b125d-80dd-4d2f-aee5-ad49abc00cd2 2014-10-22 18:26:56.367 UTC Extracts_AUCtest_statistics_xml00measure_auc00calculate_matrix00auc1omission1routermeasure_auc0calculate_matrix0extract_auc11skip_auc11skip_omission11extract_omission11net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity measure_auc 0 text/plain java.lang.String true calculate_matrix 0 text/plain java.lang.String true extract_auc 1 1 skip_auc 1 1 extract_omission 1 1 skip_omission 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_aucflag0test_statistics_xml0auc11net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeskip_aucflag0auc00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_1inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_2inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_3inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_omissionflag0test_statistics_xml0omission11net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeskip_omissionflag0omission00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_4inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_5inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_6inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeroutermeasure_aucmeasure_aucroutercalculate_matrixcalculate_matrixextract_aucflagrouterextract_aucextract_auctest_statistics_xmltest_statistics_xmlskip_aucflagrouterskip_aucFlatten_List_1inputlistextract_aucaucFlatten_List_2inputlistskip_aucaucextract_omissionflagrouterextract_omissionextract_omissiontest_statistics_xmltest_statistics_xmlskip_omissionflagrouterskip_omissionFlatten_List_4inputlistextract_omissionomissionFlatten_List_5inputlistskip_omissionomissionFlatten_List_3inputlistFlatten_List_1outputlistFlatten_List_3inputlistFlatten_List_2outputlistFlatten_List_6inputlistFlatten_List_4outputlistFlatten_List_6inputlistFlatten_List_5outputlistaucFlatten_List_3outputlistomissionFlatten_List_6outputlist 4720cca7-074b-403c-be6f-f9ac9fe95557 2013-12-01 12:50:38.24 UTC 38c083a0-6b89-4dc6-a76b-73fa87e05e3c 2013-12-01 13:25:40.763 UTC Extracts AUC 2012-12-21 17:23:18.324 UTC 7f50ad81-0233-4c24-9d99-8bc2b97a5521 2012-11-30 17:09:36.168 UTC 6c535288-b9f3-47eb-b01f-0a929d3056f0 2013-12-01 13:30:47.589 UTC Renato De Giovanni 2012-12-21 17:23:01.8 UTC Extracts the AUC value from all test results. 2012-12-21 17:23:44.376 UTC 363aa707-3b0a-4fb4-8f5c-7556d7718efd 2013-12-02 16:37:02.77 UTC 58c67563-85ea-4457-9c1a-0f0813466988 2012-11-29 19:39:01.26 UTC d4fb0105-d294-4032-9db2-a38d3d532925 2012-11-29 19:54:29.65 UTC 010615d2-f040-4d3d-a261-4e426188e6e3 2012-11-29 19:32:39.740 UTC 605caa2b-a360-4d05-83e8-2f06632cb2e5 2013-12-01 13:17:13.443 UTC 94cf441c-91da-4f26-9391-854e5737325e 2012-12-21 17:23:47.683 UTC Get_thresholdsrs00 GEOGCS["WGS84", DATUM["WGS84", SPHEROID["WGS84", 6378137.0, 298.257223563]], PRIMEM["Greenwich", 0.0], UNIT["degree", 0.017453292519943295], AXIS["Longitude",EAST], AXIS["Latitude",NORTH]] 2013-12-01 14:39:37.341 UTC threshold00 lpt 2013-12-01 14:39:57.340 UTC mask_id00 /layers/en/marine/global/incofish/HCAFv4/present/30arc-minutes/178ec510-04c0-11e1-be50-0800200c9a66 2013-12-01 14:39:50.336 UTC model_xml00 <Algorithm xmlns="http://openmodeller.cria.org.br/xml/2.0" Id="ENVSCORE" Version="0.1"> <Parameters/> <Model> <EnvelopeScore Maximum="33.880001068115234375 11.56999969482421875 0.009999999776482582092285156" Minimum="32.950000762939453125 10.77999973297119140625 0.00635326979681849479675293"/></Model></Algorithm> 2013-12-01 14:38:25.753 UTC species_label00 BioVeL species 2013-12-01 14:38:38.170 UTC presence_points_xml00 <Point Id="53784133" X="5.1419" Y="52.7322"/><Point Id="53789858" X="4.5995" Y="52.3378"/><Point Id="53789381" X="4.623" Y="52.5994"/><Point Id="53790117" X="4.963" Y="52.7537"/><Point Id="53781688" X="5.5534" Y="52.9149"/><Point Id="53783907" X="4.3797" Y="52.0221"/><Point Id="53789992" X="5.47" Y="52.9031"/><Point Id="53778229" X="3.704" Y="51.5046"/><Point Id="53776376" X="4.3068" Y="51.8116"/><Point Id="53784067" X="4.7232" Y="52.7954"/><Point Id="53780846" X="5.7475" Y="52.7075"/><Point Id="53789477" X="4.6964" Y="52.4937"/><Point Id="53781976" X="4.3615" Y="51.6573"/><Point Id="53783445" X="4.4736" Y="52.2415"/><Point Id="53779158" X="4.7948" Y="52.6872"/><Point Id="53784082" X="4.881" Y="52.7829"/><Point Id="53778754" X="4.3301" Y="51.8537"/><Point Id="53781450" X="5.2982" Y="52.3324"/><Point Id="53780907" X="4.7471" Y="52.572"/><Point Id="53781301" X="4.7922" Y="52.6736"/><Point Id="53789607" X="5.0504" Y="52.9051"/><Point Id="53780848" X="5.9601" Y="52.694"/><Point Id="53783781" X="5.9329" Y="53.1387"/><Point Id="53781884" X="4.9422" Y="52.3593"/><Point Id="53786590" X="4.6979" Y="52.8043"/><Point Id="53783851" X="5.9812" Y="52.6594"/><Point Id="53789316" X="5.9497" Y="52.5782"/><Point Id="53778439" X="4.7172" Y="52.5745"/><Point Id="53778266" X="5.586" Y="53.2722"/><Point Id="53780821" X="4.8571" Y="52.7862"/><Point Id="53778547" X="5.0211" Y="52.29"/><Point Id="53779042" X="3.8394" Y="51.6838"/><Point Id="53787448" X="5.0945" Y="52.3064"/><Point Id="53781715" X="5.046" Y="52.8733"/><Point Id="53778723" X="4.3173" Y="51.9126"/><Point Id="53780842" X="4.6989" Y="52.7244"/><Point Id="53784254" X="4.8814" Y="52.5196"/><Point Id="53779200" X="5.9158" Y="52.5271"/><Point Id="53789398" X="4.1314" Y="51.8424"/><Point Id="53778374" X="5.8671" Y="52.7109"/><Point Id="53781656" X="5.8882" Y="53.1293"/><Point Id="53780971" X="4.8968" Y="52.4175"/><Point Id="53787091" X="4.9206" Y="52.397"/><Point Id="53778707" X="4.4984" Y="51.956"/><Point Id="53784019" X="5.046" Y="52.8733"/><Point Id="53781963" X="4.2664" Y="51.9496"/><Point Id="53783531" X="3.5655" Y="51.4567"/><Point Id="53781517" X="4.7485" Y="52.0623"/><Point Id="53787145" X="4.8258" Y="52.7537"/><Point Id="53778454" X="5.6766" Y="52.5381"/><Point Id="53786891" X="4.8814" Y="52.5196"/><Point Id="53784433" X="4.873" Y="53.169"/><Point Id="53787513" X="5.0491" Y="52.8538"/><Point Id="53787419" X="3.5655" Y="51.4567"/><Point Id="53783911" X="4.9585" Y="52.006"/><Point Id="53787081" X="4.6714" Y="52.4203"/><Point Id="53790080" X="4.9493" Y="52.8"/><Point Id="53778324" X="4.6939" Y="52.7992"/><Point Id="53779160" X="4.7415" Y="52.6751"/><Point Id="53778851" X="6.1796" Y="53.3821"/><Point Id="53778497" X="4.8625" Y="52.472"/><Point Id="53782072" X="4.8658" Y="52.732"/><Point Id="53786677" X="4.7817" Y="52.5304"/><Point Id="53778885" X="4.7847" Y="52.8805"/><Point Id="53778515" X="5.6786" Y="52.4021"/><Point Id="53779249" X="4.5539" Y="52.0092"/><Point Id="53783786" X="4.778" Y="53.0701"/><Point Id="53776300" X="4.459" Y="51.9778"/><Point Id="53776332" X="4.1214" Y="51.9121"/><Point Id="53784006" X="4.7199" Y="52.8951"/><Point Id="53784321" X="4.9313" Y="52.2917"/><Point Id="53778215" X="4.4975" Y="51.5771"/><Point Id="53783572" X="4.7211" Y="52.8387"/><Point Id="53786572" X="5.906" Y="52.8367"/> 2013-12-01 14:38:56.204 UTC absence_points_xml00layers00 /layers/en/marine/global/incofish/HCAFv4/present/30arc-minutes/178ec510-04c0-11e1-be50-0800200c9a66 /layers/en/marine/global/incofish/HCAFv4/present/30arc-minutes/4be275f0-04c0-11e1-be50-0800200c9a66 /layers/en/marine/global/incofish/HCAFv4/present/30arc-minutes/61e7a060-04bf-11e1-be50-0800200c9a66 2013-12-01 14:39:23.379 UTC threshold0check_if_threshold_must_be_calculatedthreshold0repeat_value11calculate_threshold11net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity threshold 0 text/plain java.lang.String true calculate_threshold 1 1 repeat_value 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokerepeat_valueflag0input_threshold0output_threshold00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity input_threshold 0 text/plain java.lang.String true flag 0 text/plain java.lang.String true output_threshold 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_model_valuesflag0threshold0mask_id0model_xml0species_label0srs0presence_points_xml0absence_points_xml0layers0output_threshold00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_1inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_2inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_first_itemlist1single_value00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity list 1 text/plain java.lang.String true single_value 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecheck_if_threshold_must_be_calculatedthresholdthresholdrepeat_valueflagcheck_if_threshold_must_be_calculatedrepeat_valuerepeat_valueinput_thresholdthresholdget_model_valuesflagcheck_if_threshold_must_be_calculatedcalculate_thresholdget_model_valuesthresholdthresholdget_model_valuesmask_idmask_idget_model_valuesmodel_xmlmodel_xmlget_model_valuesspecies_labelspecies_labelget_model_valuessrssrsget_model_valuespresence_points_xmlpresence_points_xmlget_model_valuesabsence_points_xmlabsence_points_xmlget_model_valueslayerslayersFlatten_List_1inputlistget_model_valuesoutput_thresholdget_first_itemlistFlatten_List_2outputlistFlatten_List_2inputlistrepeat_valueoutput_thresholdFlatten_List_2inputlistFlatten_List_1outputlistthresholdget_first_itemsingle_value 86910750-3019-461e-ac2f-0e6ed394f4d9 2013-12-01 12:38:00.805 UTC 8e65c364-f58e-4dfc-aa44-72df572cb645 2013-12-10 17:50:51.375 UTC 247c67a9-6f0f-4d27-8974-8378ef4bf335 2013-11-29 18:13:52.220 UTC 670d6aa3-5fa3-492d-aec6-ef3c20b2c092 2013-11-29 18:25:14.623 UTC Defines the threshold to be used when confusion matrix needs to be calculated. 2013-11-29 18:13:12.391 UTC Get threshold 2013-11-29 18:12:38.190 UTC 1b1805c3-09fb-467e-b6d9-82dd5cfdbba8 2013-12-01 14:40:37.44 UTC b9a2cae4-3baa-4807-9356-f57cf0b1b14b 2013-11-29 18:34:38.555 UTC 30f9c13a-111d-424a-903a-02dd8198a5ea 2014-11-19 13:55:59.146 UTC 8c765d8e-938c-4127-a439-578f69402b6f 2013-12-01 15:50:22.281 UTC 5b070aac-0c3c-43ec-b022-c83c4fca4452 2014-02-13 09:51:53.361 UTC a13b84e9-9c74-49a1-a320-e87997707bb6 2013-12-01 13:32:17.965 UTC 59f4429c-663b-4de4-a38a-c07aa7afd6c5 2013-11-30 13:51:12.944 UTC Renato De Giovanni 2013-11-29 18:12:26.798 UTC c1219f16-dca5-4f47-b0d8-a92c0c96bbcd 2013-12-01 12:18:13.629 UTC 43f2df35-4ed3-44e5-9c13-e56be0d9e963 2013-11-30 13:59:37.475 UTC 38ca6ed9-e336-4903-af2e-2510281e888b 2014-12-04 12:40:35.845 UTC 36c72d1a-e260-4b89-909f-d351ee58bedd 2014-10-22 18:26:58.719 UTC 2a146875-4939-4107-a48e-74fa82520612 2013-11-29 18:13:14.909 UTC 74c6d1e6-6ee0-472b-afd4-db134dbf53f0 2013-11-29 18:12:02.62 UTC Perform_cross_validaalgorithm_xml00layers_str00training_points00testing_points00sentinel00mask00threshold00measure_auc00calculate_matrix00species_label00xval_create_model_log0xval_serialized_model0xval_test_model_log0xval_test_model_statistics0xval_threshold0create_modelmask_id0algorithm_xml0presence_points_xml0srs0spatially_unique0environmentally_unique0absence_points_xml0species_label0layers_ids0model_xml00log00full_serialized_final_model00 This part creates the XML configuration for model creation. 2012-12-21 17:11:25.20 UTC net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components create_model 10 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_thresholdthreshold0mask_id0presence_points_xml0layers0model_xml0species_label0absence_points_xml0srs0threshold00net.sf.taverna.t2.activitiesdataflow-activity1.5net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketest_modelthreshold0presence_points_xml0calculate_matrix0calculate_roc0mask_id0model_xml0species_label0srs0num_background_points0absence_points_xml0layers_ids0log00statistics_xml00net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components test_model 11 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokedefine_frequently_used_constantslatlong_wgs8400no00empty_string001000000net.sf.taverna.t2.componentcomponent-activity1.5net.sf.taverna.t2.component.ComponentActivity http://www.myexperiment.org ENM components define_frequently_used_constants 3 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecreate_modelmask_idmaskcreate_modelalgorithm_xmlalgorithm_xmlcreate_modelpresence_points_xmltraining_pointscreate_modelsrsdefine_frequently_used_constantslatlong_wgs84create_modelspatially_uniquedefine_frequently_used_constantsnocreate_modelenvironmentally_uniquedefine_frequently_used_constantsnocreate_modelabsence_points_xmldefine_frequently_used_constantsempty_stringcreate_modelspecies_labelspecies_labelcreate_modellayers_idslayers_strget_thresholdthresholdthresholdget_thresholdmask_idmaskget_thresholdpresence_points_xmltraining_pointsget_thresholdlayerslayers_strget_thresholdmodel_xmlcreate_modelmodel_xmlget_thresholdspecies_labelspecies_labelget_thresholdabsence_points_xmldefine_frequently_used_constantsempty_stringget_thresholdsrsdefine_frequently_used_constantslatlong_wgs84test_modelthresholdget_thresholdthresholdtest_modelpresence_points_xmltesting_pointstest_modelcalculate_matrixcalculate_matrixtest_modelcalculate_rocmeasure_auctest_modelmask_idmasktest_modelmodel_xmlcreate_modelmodel_xmltest_modelspecies_labelspecies_labeltest_modelsrsdefine_frequently_used_constantslatlong_wgs84test_modelnum_background_pointsdefine_frequently_used_constants10000test_modelabsence_points_xmldefine_frequently_used_constantsempty_stringtest_modellayers_idslayers_strxval_create_model_logcreate_modellogxval_serialized_modelcreate_modelfull_serialized_final_modelxval_test_model_logtest_modellogxval_test_model_statisticstest_modelstatistics_xmlxval_thresholdget_thresholdthreshold b6103842-c94b-4edc-811f-189ffd884f8c 2014-02-13 09:51:57.619 UTC eb4cec1c-4e49-4b66-8558-ff7e3613f947 2013-11-30 13:43:17.209 UTC fdc404a4-39d4-4ea0-b5c5-98aa08f7e3af 2012-12-03 18:24:32.464 UTC c85eb4fb-9ca1-447a-b69c-b0db7c0f0f04 2012-12-03 18:25:23.667 UTC cd8e08f5-d5fd-429a-b9a5-bd4bfffc21c4 2012-11-29 18:27:49.772 UTC c390d174-eb47-4cd6-93be-74f6e05f6abb 2013-05-15 17:12:50.836 UTC 79962804-db8b-4c4d-a58e-f53931c06919 2014-12-04 12:40:40.989 UTC 86537cc5-5394-42a7-bfec-6d5c785b5532 2012-11-28 17:52:15.225 UTC 3ee6f8f2-38bf-48da-8580-718ba406871c 2013-12-10 17:44:21.326 UTC 3b69601e-044e-4a02-8873-9f1f046eabfc 2012-11-28 17:49:26.321 UTC 4a4bb2df-15c3-448f-b264-f63e003fbc74 2012-12-04 12:50:55.798 UTC 4156f9de-65a5-483e-b8b4-1a3da1eefc0a 2012-12-03 18:43:22.855 UTC f76c2304-d14e-4cc6-8044-bd041ae85cf5 2013-10-11 17:50:10.906 UTC d5f86600-3358-47a4-af15-d7571a44adbb 2012-11-28 16:38:29.63 UTC 82021079-ae3f-40cb-a590-358c307f701a 2012-11-28 16:41:38.543 UTC 9e243893-bafc-4e4c-ad04-9b11c0a81b1e 2013-12-02 11:14:26.263 UTC 09005bbe-b82e-4eb3-92c9-0e4f9fb6d882 2013-10-09 16:37:22.215 UTC 41d118eb-14db-4735-a5e9-39bea7dec99c 2013-12-10 17:34:46.337 UTC Runs a series of create model / test model tasks using different points specified in the parameters. 2012-12-21 17:21:56.501 UTC 0873501a-84b6-49d6-82a9-7e7b8c58b774 2012-11-28 16:37:17.473 UTC cd46f1ca-1020-47b3-9843-4c5f7dc80d9d 2012-11-28 16:33:34.781 UTC 032b35b1-f644-48d2-8b3b-45c306dec104 2013-10-04 07:51:04.43 UTC 55fb8600-c089-417c-86fd-1adf8c395dcf 2013-12-01 12:18:19.292 UTC 58eedaa6-08bb-4908-8941-91e43b9294b5 2012-11-28 16:43:17.42 UTC 80c5c90e-2c98-4b02-b8ce-dc536487e0ed 2013-12-01 12:38:11.897 UTC 7f0f39ba-04bb-46d8-90cc-eb6a22cf4a82 2013-12-01 13:32:23.316 UTC Renato De Giovanni 2012-12-21 17:20:35.630 UTC c2a4ff2f-5d71-43a7-983d-152c92e3af9e 2012-11-28 16:34:39.850 UTC 39cc56af-62bc-482f-859f-8af667149fde 2012-12-20 14:02:56.466 UTC f4cf8585-f1ce-4949-875c-0e0895d7eda7 2014-12-04 15:55:36.467 UTC ebbed81d-9f57-465d-b322-4d2ccad0a55b 2013-12-10 17:55:26.253 UTC e14a2ee0-4199-41c2-aa7a-9735f1db61bd 2012-11-28 16:44:43.702 UTC c35541f8-2905-473a-8544-145c0cb7c4d5 2013-10-03 18:20:33.306 UTC ec83bb29-2d4b-4c9d-9f38-8043e90d5d61 2013-10-10 17:11:47.765 UTC 6bce50a3-6f6a-47e7-b4fd-aef224fc135e 2013-11-30 13:29:51.803 UTC 0635cf6f-58c2-4312-9864-3cda08eafcea 2013-10-10 17:12:38.920 UTC b841b3fa-81a6-4554-8a33-1d1b5b5651e4 2012-11-28 16:39:52.852 UTC 9b8cc4ee-c91d-4339-abb2-afd4649ce773 2013-10-15 15:06:27.900 UTC 2f7ec2c7-7cf7-404c-9ae8-58aeb5e126f5 2013-10-11 17:42:17.540 UTC 39107f3e-4dbc-49d5-bb0c-497f15b304d2 2012-11-29 20:12:04.28 UTC 8daa59c7-dce0-4069-86a6-35e6502ea806 2014-11-19 13:55:11.592 UTC dca20982-1a6e-438a-9a54-a7c6a37caca8 2013-10-03 17:15:39.389 UTC ed105fa5-ec56-44c9-a668-a0539b5a3086 2013-10-11 17:39:00.42 UTC abe34ab4-26c0-4c54-89e9-9dae949933e4 2012-11-28 16:44:26.588 UTC a073b130-f39e-4233-a3b7-7d82cf93c4ea 2013-10-15 14:46:49.125 UTC bc8fde5b-34fe-4048-9d63-896f29128786 2013-10-03 17:14:41.964 UTC f9758eb4-0baf-4349-9fe6-0a4f721c6a34 2013-10-03 17:16:32.603 UTC a01c62b4-444b-4681-9484-3b6ad6346e5d 2013-10-10 17:17:08.339 UTC 51391b66-0fc0-425d-9f76-899fa45706a7 2013-12-01 14:42:22.49 UTC 3201210e-6019-4275-ad45-acafd86964e5 2013-05-16 14:42:06.682 UTC ca63485c-43a1-4710-a2ee-c79521f3c6e9 2012-11-29 18:15:18.264 UTC b218e751-bb1a-4121-a403-0c3844950c16 2012-12-04 13:18:14.910 UTC ba3ca17a-289e-4ce4-ad5e-b82e07135cb8 2013-10-04 07:49:55.886 UTC dbc6b8ec-62cf-47db-b337-58fde79efa50 2013-12-01 12:41:54.152 UTC 3c1755ec-1f8d-4067-b180-d31aafa92cfe 2013-12-01 15:51:05.384 UTC 28850167-9a8e-4893-bdd8-a5d07c78dfd3 2012-12-04 12:46:36.492 UTC a078f4b5-8f42-438c-a6a6-de7b3a43c495 2012-12-21 17:21:59.589 UTC 346ceff0-e043-4048-aeeb-baf146d0743d 2012-11-29 18:25:40.334 UTC 7618c85e-7bfe-4a9b-a90e-5bd85a8a9f23 2013-11-30 13:59:42.717 UTC 22e752ca-bd9a-418b-9a5b-5ef359433440 2014-10-10 15:32:16.953 UTC b0a13757-94a4-4296-a89d-ab4118787a61 2013-10-03 18:21:47.377 UTC 7fde2ae7-a162-4604-99fd-d60accdc8fcf 2012-12-03 18:31:09.837 UTC 730b51b7-56a4-4b8e-87d0-da9c50e0262e 2014-11-19 13:56:03.296 UTC 6f2280c3-2685-4215-b113-c4e154d102e2 2013-12-10 17:50:56.851 UTC b678d995-7512-4245-9f73-d39c5087aab9 2013-10-03 17:22:34.930 UTC Perform cross validation with the given points 2012-12-21 17:21:01.667 UTC a1df5f90-728b-443f-9236-9d2d1bf38256 2012-11-28 16:32:04.217 UTC 53f8f65c-bc03-40b2-8466-0a24eb46a2d2 2014-10-22 18:27:01.423 UTC d1c0c52a-acc6-4252-a9d1-fd8230f0aac1 2013-10-10 17:10:30.793 UTC f7b58da1-6cf3-42a4-83e2-373e82d070ba 2013-12-02 11:09:25.606 UTC 19658821-8c05-4f47-ab65-970875bc9cb1 2013-10-04 08:06:15.906 UTC c5aec172-3d00-4185-be22-5940bd94b67b 2013-11-30 13:51:44.753 UTC Workflow66flag00omission0assign_zerozero00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity zero 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeomissionassign_zerozero 0c97ba3b-3198-4f20-aa3f-c33a8931ac6e 2013-12-02 16:36:26.214 UTC 064470a2-06a1-46d1-92cc-75868d8d8282 2013-12-01 13:16:46.439 UTC c2956e03-e53d-4dcd-a7f6-795f785097ed 2013-12-01 13:15:47.840 UTC 78f77d78-7c66-4acb-88c1-68dd7e47be4b 2013-12-01 13:23:12.827 UTC Workflow66flag00auc0assign_zerozero00net.sf.taverna.t2.activitiesbeanshell-activity1.5net.sf.taverna.t2.activities.beanshell.BeanshellActivity zero 0 0 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeaucassign_zerozero 86420454-ffcb-44df-863a-afa374880426 2013-12-02 16:37:00.301 UTC 064470a2-06a1-46d1-92cc-75868d8d8282 2013-12-01 13:16:46.439 UTC c2956e03-e53d-4dcd-a7f6-795f785097ed 2013-12-01 13:15:47.840 UTC flatten_cross_validation_outputsxval_test_model_log22xval_test_model_statistics22xval_create_model_log22xval_threshold22xval_serialized_model22xval_test_model_log1xval_test_model_statistics1xval_threshold1xval_create_model_log1xval_serialized_model1Flatten_List_1inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_2inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_3inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_4inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_5inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.5net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_1inputlistxval_test_model_logFlatten_List_2inputlistxval_test_model_statisticsFlatten_List_3inputlistxval_thresholdFlatten_List_4inputlistxval_create_model_logFlatten_List_5inputlistxval_serialized_modelxval_test_model_logFlatten_List_1outputlistxval_test_model_statisticsFlatten_List_2outputlistxval_thresholdFlatten_List_3outputlistxval_create_model_logFlatten_List_4outputlistxval_serialized_modelFlatten_List_5outputlist flatten_cross_validation_outputs 2013-12-02 11:20:08.313 UTC 8a2a81d5-b19d-4222-8cf4-e338d445c15d 2013-12-02 11:20:41.524 UTC 2608ce52-f3de-4ccc-ba8c-b1495ebd6197 2013-12-02 11:46:23.308 UTC Workflow60test_statistics_xml00flag00auc1extract_aucxml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.5net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Statistics xmlns="http://openmodeller.cria.org.br/xml/2.0"> <ConfusionMatrix Accuracy="100" CommissionError="-100" FalseNegatives="0" FalsePositives="0" OmissionError="0" Threshold="0.5" TrueNegatives="0" TruePositives="55"/> <RocCurve Auc="0.9977500000000000257571742" NumBackgroundPoints="10000" Points="0 0 0 0 0.004499999999999999659994199 1 0.006700000000000000226207941 1 0.008000000000000000166533454 1 0.008899999999999999925059946 1 0.01030000000000000012767565 1 0.01140000000000000041078252 1 0.01220000000000000077438056 1 0.01269999999999999948374629 1 0.01329999999999999932276395 1 0.01499999999999999944488849 1 0.01629999999999999851785226 1 0.01820000000000000089928065 1 0.02220000000000000098254738 1 1 1"/></Statistics> /default:Statistics/default:RocCurve/@Auc default http://openmodeller.cria.org.br/xml/2.0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.5net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_aucxml_texttest_statistics_xmlaucextract_aucnodelist e556e5fe-3835-4ab9-8334-1ffe7714e5a0 2013-12-01 13:13:10.934 UTC 3ee66921-34df-4b39-bb80-ba9ff7d7db3c 2013-12-01 13:14:29.419 UTC 9fc85275-6236-4888-bc2d-33e72363df0d 2013-12-01 13:12:41.636 UTC