Mining_the_Kegg_pathpath_to_input_file00This takes the input of the local directory where the user has stored the GWAS output. It is necessary that the SNP IDs be present in the first column of the input file.2012-08-29 17:42:29.660 UTC/home/marco/Dropbox/Wf4Ever/Reviews/year 2/Demo/UserMaterial/datasetmarkers_hgvrs487.txt2013-01-23 09:50:52.729 UTCset_width001000002012-08-29 17:52:38.326 UTCThe allows the user to set the flanking width for the gene for determining SNPs2012-08-29 17:51:43.227 UTCpath_to_output_file00/home/marco/Dropbox/Wf4Ever/Reviews/year 2/Demo/UserMaterial/output_snp_gene_pwy.txt2013-01-23 09:51:17.553 UTCThis takes the input of the local directory where the user has stored the GWAS output. It is necessary that the SNP IDs be present in the first column of the input file.2013-01-22 13:27:57.785 UTCextract_snp_idstring0out100This extracts the contents (snp_ids) of the first column from the input.It is important that the first column contains SNP IDs for this reason.2012-08-29 17:47:52.146 UTCnet.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivitystring0text/plainjava.lang.Stringtrueout100workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionregex0string0split11This service splits the string value into a string list at every occurrence of the specified regular expression. The regular expression provided in this case is a new line: "\n"2012-08-29 17:45:33.119 UTCnet.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivitystring0'text/plain'java.lang.Stringtrueregex0'text/plain'java.lang.Stringtruesplit1l('text/plain')1workfloworg.embl.ebi.escience.scuflworkers.java.SplitByRegexnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity\nnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehsapiens_snphsapiens_snp.snp_filter_filter0hsapiens_snp.chrom_start10hsapiens_snp.chr_name10This is a Biomart service that takes the SNP ID as the input and returns chromosome name, and the position of the SNP.2012-08-29 17:49:44.511 UTCnet.sf.taverna.t2.activitiesbiomart-activity1.4net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11This service flattens the inputlist by one level. It returns the result of the flattening.2012-08-29 17:50:04.635 UTCnet.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivityinputlist2l(l(''))[Btrueoutputlist1l('')1workfloworg.embl.ebi.escience.scuflworkers.java.FlattenListnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_2inputlist2outputlist11This service flattens the inputlist by one level. It returns the result of the flattening.2012-08-29 17:49:59.830 UTCnet.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivityinputlist2l(l(''))[Btrueoutputlist1l('')1workfloworg.embl.ebi.escience.scuflworkers.java.FlattenListnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeinput_chr_positionchr_in1in21in11chr_out11end_out11start_out11The purpose of this beanshell is to manipulate the start and end positions based on the flanking width provided by the user.2012-08-29 17:54:24.874 UTCnet.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivitychr_in1text/plainjava.lang.Stringtruein21text/plainjava.lang.Stringtruein11text/plainjava.lang.Stringtruechr_out11end_out11start_out11workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRead_Text_Filefileurl0filecontents00This service reads the text file at the specified file path or URL and returns the file's content.2012-08-29 17:45:16.99 UTCnet.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivityfileurl0'text/plain'java.lang.Stringtrueencoding0'text/plain'java.lang.Stringtruefilecontents00workflownet.sourceforge.taverna.scuflworkers.io.TextFileReaderUserNameHere2011-12-02 20:12:09.377 UTCnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCreate_and_populate_temporary_file_2content0filepath00This service creates a temporary file in a local tmp directory.2012-08-29 18:10:19.8 UTCnet.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivitycontent0'text/plain'java.lang.Stringtruefilepath0'text/plain'0workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_Files_2filelist1outputfile0This service examines the files whose paths or URLs are specified in the filelist. The content of those files is concatenated.2012-08-29 18:10:35.559 UTCnet.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivityfilelist1l('text/plain')java.lang.Stringtrueoutputfile0'text/plain'java.lang.Stringtruedisplayresults0'text/plain'java.lang.Stringtrueresults0'text/plain'0workflownet.sourceforge.taverna.scuflworkers.io.ConcatenateFileListWorkernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCheckFilenameinfilename0outfilename0outfilename00This Beanshell prevents accidental overwrite of the input file by the output file. If filenames are equal it prepends "output_" to the output filename.2013-01-23 17:45:10.61 UTCnet.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivityinfilename0text/plainjava.lang.Stringtrueoutfilename0text/plainjava.lang.Stringtrueoutfilename00workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGene_to_PathwaySNP0chromosome0chrom_end0chrom_start0output_table11This nested workflow extracts gene regulatory pathways from the KEGG database that are presumably affected by the SNPs identified by GWAS.2013-01-30 07:55:04.209 UTCnet.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_3inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivityinputlist2l(l(''))[Btrueoutputlist1l('')1workfloworg.embl.ebi.escience.scuflworkers.java.FlattenListnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_snp_idstringSplit_string_into_string_list_by_regular_expressionregexSplit_string_into_string_list_by_regular_expressionstringhsapiens_snphsapiens_snp.snp_filter_filterFlatten_ListinputlistFlatten_List_2inputlistinput_chr_positionchr_ininput_chr_positionin2input_chr_positionin1Read_Text_FilefileurlCreate_and_populate_temporary_file_2contentConcatenate_Files_2filelistConcatenate_Files_2outputfileCheckFilenameinfilenameCheckFilenameoutfilenameGene_to_PathwaySNPGene_to_PathwaychromosomeGene_to_Pathwaychrom_endGene_to_Pathwaychrom_startFlatten_List_3inputlist470b1948-bcb8-401e-88ee-72172c9a1c752012-05-25 14:15:48.972 UTC59c48ad2-46fa-4c6a-920e-35585a726e7f2012-07-13 12:50:51.21 UTCf0b2d523-78cc-49db-88a3-3c93c837b5fb2012-05-29 09:17:34.988 UTC909dac87-86fa-4b27-b8f0-e58b6acf03292011-12-02 20:03:51.11 UTC396f1052-af35-4b0c-b81a-e6c80c9aa79b2012-07-13 04:53:30.495 UTC9d84acd8-2d53-46c1-b1d0-d395b26d5ffc2012-05-25 14:14:15.364 UTC50e39586-05d0-4cac-80e5-ca7476e4c62c2012-05-28 13:06:09.328 UTC6a975b77-984e-4396-92f0-74aaba68cc6e2011-12-05 09:26:42.234 UTC0e6e104f-a696-4555-9fd0-b8e6a84e960e2012-08-29 17:56:05.884 UTCea513290-65bf-47d1-a69e-347cac6a273f2012-07-24 13:14:40.56 UTC225e0718-30f5-4431-9c93-1367d0875f1c2011-12-05 08:42:08.453 UTC5a59c0b8-b1d0-4d7e-af85-b9c292bef2fa2012-08-29 18:14:29.661 UTC9dbddb98-bc13-49e4-99ea-abadf243ba482012-07-13 12:18:30.623 UTC5a467702-34f4-41a2-8147-bed144e670822013-01-21 17:45:35.763 UTC9e402cfc-fd28-4555-b7a0-75cb8851a8232011-12-02 20:02:17.831 UTCdf724031-6ef9-4bbf-80d1-0978f512f1662012-05-24 07:13:09.787 UTC4ed47709-f143-454e-9df8-fc1ee053577c2012-05-28 14:45:04.634 UTC7c853e04-989f-467d-960a-8ad72355c5f22012-05-29 09:56:07.94 UTCcdece6df-95ce-4f59-9f4d-c99dd46dad412013-01-21 19:13:45.867 UTC9916b6e6-526d-4583-b390-64518c4f06a12012-07-13 03:37:35.435 UTCd2fab0b4-1886-49e3-b4e0-2ef4791554e32012-05-24 14:28:23.199 UTC404b5061-dcee-4022-af0b-3f03ffb579d92012-07-10 13:47:51.897 UTCba3d90fe-3286-4a20-9f70-1f96d3553cde2012-05-25 14:43:53.153 UTC18633aad-72f8-4de7-8355-7a3b41d2e7822011-12-02 20:01:21.139 UTC418d93b2-546c-4e33-b77a-9ef284b183922011-12-05 09:21:49.671 UTC0d757f59-9497-426a-b0dd-bdb68d3796d02012-05-24 11:52:38.509 UTC8ed5c836-7421-4937-82a4-afd071d360682012-05-28 15:49:27.444 UTCe9205450-f061-4220-a690-24780f5752582012-05-24 10:09:38.171 UTC661bc095-4dce-4ec9-885a-62cd4678a17d2012-05-25 15:39:45.220 UTC537f3d64-b1fd-43bd-9c13-ad4372dd7a512012-05-29 09:49:35.836 UTC39ebc55b-a839-4ddb-854b-ff51dc3777032012-05-28 14:11:19.840 UTC7732d491-9163-41d3-b43e-07f5e3710a5b2012-07-13 03:45:40.363 UTC52aa7823-c531-4e64-9543-bbf57aa4c0de2012-05-24 13:30:11.840 UTCbba91acb-8f29-45c8-b827-5fa8573f354d2012-05-28 16:08:22.706 UTCd9d5b914-c845-47f6-baa5-4965149a3eb62012-05-28 13:14:24.783 UTCe2169816-71c1-4ae7-a75e-a6468bd445952013-01-23 17:47:33.987 UTC3e653fd3-19df-4ad7-b46b-a47192bf66392012-07-13 03:09:16.430 UTC21f88381-9624-4b53-b90d-338c897666402012-07-12 22:31:49.351 UTCd60af604-f923-4b3b-84a1-e5cab6eba64f2012-05-24 10:23:12.911 UTC388cc1a4-6e6d-4f55-b250-6783360f073d2012-05-28 13:27:42.744 UTCf961460c-2aac-418a-82c8-c6f9bb84bc252012-05-23 09:33:23.569 UTC011d4fd1-e2f8-4a95-aadb-1b9202ea39372013-01-22 01:28:08.792 UTC136247cc-6e2d-4a2c-a703-590419195f992012-05-29 07:49:50.399 UTCd7cc4df4-9383-4543-870f-1beaa09c70f72012-05-29 10:05:40.594 UTCd32c5756-1d22-4b4a-9069-d37c43dc1b582013-01-21 17:58:20.660 UTC0fe8a23c-ab84-4025-a5c0-27c652d9b7eb2012-05-28 15:06:02.685 UTC65969e5e-369b-46b3-88d7-22747d38898a2012-05-29 09:14:34.991 UTCe33d1b5a-4387-40af-8eb3-610183d068a12012-05-25 14:48:46.775 UTCc79e9515-71ad-43a9-aaa5-b3c0b9f0c8442012-05-23 09:32:11.351 UTC880814c1-426f-4e59-8882-9241af4421492012-05-28 15:50:25.224 UTCa3dc86e8-ceb9-4224-a702-83ef11cddaa12011-12-02 20:12:19.143 UTCb6009e1a-5bd6-44e3-bdd6-9af7c90bdc522012-05-25 14:17:37.221 UTCec2bec87-7bbf-4e50-a8c6-86a2aac5435f2012-05-28 15:30:15.216 UTCe8e28dad-160e-438f-b1a4-1bc0c952cee42012-05-29 08:10:33.77 UTC68edacf2-b990-4a31-b694-c8cacd99e4652011-12-02 20:18:54.225 UTC4717b80f-c414-4cef-a833-5c74344454812011-12-04 20:17:49.522 UTC773ad5ff-fa77-4807-9699-bc75f0be63b92011-12-04 19:55:52.32 UTC0dd472cc-fca4-40c7-befc-dc40d070613e2012-05-28 12:57:45.369 UTCaa8a665b-2e33-4b91-b596-c3b36cd8b7142012-05-29 09:54:53.96 UTC8fba433b-1a50-4c58-9d88-4ce23c30b3ab2011-12-04 20:34:38.768 UTCf651a96e-f829-4d2c-812e-04b9147995272012-05-24 14:16:55.168 UTC1f9fa403-1de0-4605-ae95-7964bb2b2a912012-05-23 09:00:46.292 UTC122b2bb9-fdc0-4545-a673-487ec8eb4c9f2012-05-28 13:32:55.580 UTC6b626d75-da3f-41fb-8446-76815e423e902013-01-22 21:35:48.581 UTC3b8a830b-befd-4274-a627-de73d272b6f82011-12-05 10:11:10.661 UTCe70800df-db56-46cc-95c6-7331be9cfc222012-05-25 14:43:01.545 UTCc6a4b654-7519-49bf-bb26-82fd81e32d522012-05-28 14:47:56.177 UTC08bfcf03-f582-482e-b95b-ae6f499143d02013-01-21 14:31:36.904 UTC8369db6a-1d67-44e8-bdc0-5586d6ac26652012-07-09 14:27:40.403 UTCf4ba5bba-e195-456c-9fce-4c7a04ef8e232012-05-28 13:11:04.53 UTC66d2a846-2d42-40a1-ac4a-0cb5ece59b2b2012-07-13 19:44:04.313 UTCfbd6acb9-1f7a-485b-b210-72db3143c54d2013-01-21 18:32:30.597 UTCc3eb4a90-1ef2-405e-8f56-e6f6ec2f87db2012-05-28 15:46:04.713 UTCe30dc445-e2a0-43f3-bfd7-083d248b55da2012-05-28 13:40:30.818 UTC56d2388f-4512-4039-8ac5-3765096581562012-07-10 16:26:23.285 UTC6fe9cd02-1659-43c2-b2b5-5251f8b58c2d2013-01-22 20:55:23.360 UTCaa106f23-15fa-4bde-8481-f38d9145ea4a2012-05-28 15:24:47.801 UTC2e5e5024-9bf2-4adf-befb-f4585fe28e0e2012-05-24 10:11:45.87 UTC5041e588-5b2c-46e2-bcd5-6df40c41b9852012-07-13 10:56:58.41 UTCf8945a46-eff7-4297-a204-f80e05d0054d2013-01-21 14:40:52.588 UTC819a2da6-ac2f-450f-8898-ca47c9e176902012-05-28 13:26:14.402 UTC6327f30f-f86f-407f-b65b-25dc8dd3a0222012-05-28 15:28:42.515 UTCMining the Kegg pathway database with the top hits from a GWAS, thereby predicting which gene regulatory pathways may be altered as a result of genetic mutations in a subpopulation.2013-01-30 07:57:27.554 UTCf4bbc070-c3f5-48c7-bc3b-3e36572e755d2012-05-28 15:21:02.683 UTC31edde4d-c021-4050-8192-3547f650035e2012-05-28 13:16:38.232 UTC4e96a334-f577-4dbd-8ec0-d184aa0c403c2013-01-23 04:14:48.784 UTC1b31e1dc-c604-41cd-ada0-7a630d9ab2022012-05-23 09:50:23.48 UTC86fc5859-0361-485f-ac5e-efdac56e896c2012-08-29 18:02:56.373 UTC27f67a96-5a0f-4b9f-bc36-e487b30223242011-12-05 10:09:35.932 UTC3e9f3842-9dfc-4b71-a356-a1516667a0652012-05-28 16:29:16.964 UTCcaeeda28-d63a-4967-86a1-60b9f82afdbc2012-07-13 11:40:22.904 UTC4a1ca2ff-c712-4787-bad3-b37c5f1531dd2013-01-21 19:24:08.63 UTC720aa582-de73-463d-b2bc-ddd1699ebc4b2012-05-24 06:55:01.111 UTC4002f6bd-d804-4219-bf5d-1e3da51e388d2012-07-14 02:58:10.79 UTC37852792-3988-4ca1-894b-f18c3e6caa3d2012-05-28 13:36:48.449 UTC9754d989-1173-40df-bed9-a561f2c102c52012-07-13 11:32:04.849 UTCe26cb189-f7ee-4b58-8a5a-383bbc50ade62013-01-22 00:57:40.770 UTC131530e7-7bf2-440b-8ae4-7de74e4704262012-05-28 14:56:56.476 UTC7dfa4a0e-911a-49e7-8fa9-867599fe1acb2012-05-28 14:13:25.228 UTC98a34165-cf45-4fbb-92dd-9714728b200e2012-05-28 15:34:06.993 UTCe489f882-ec1f-492a-b233-89afc3a5d9982012-05-29 08:19:59.344 UTC07448a4e-6711-403d-80a7-bbce3a10c9e52012-05-23 10:24:50.354 UTC56f48acf-de19-4709-991f-cdc768c578d82012-07-09 14:15:50.905 UTC906db120-9f44-4cfc-8b28-91468dfee79a2013-01-22 01:55:17.932 UTC20b3043a-15dc-4c96-a5aa-9fb1a5ade9172011-12-05 13:10:38.566 UTCfcbc52b2-3f39-41cf-9eb2-f17badb0827c2012-05-29 09:25:28.151 UTC5579e4f5-3b8a-41b5-a0b9-5a73d4d8f8b82012-05-28 15:22:26.463 UTC16fc0fde-d715-4380-8c10-4f4362d71ac82012-05-24 14:14:29.971 UTC1e2fc50e-6f54-4c4b-854c-aecf80d242722012-05-23 09:11:52.877 UTC79dc3865-dde2-4c84-88e4-3069af4193632012-07-13 20:26:29.179 UTCb32a03e5-3a55-4c72-b3f5-5f041d859d252012-05-28 13:43:41.246 UTC8b1ca805-f1a3-45c0-8dd0-c2367fb624942012-05-29 09:24:10.559 UTCba6ce7ea-bec1-4cdc-8c9d-bae2d1086a9d2012-05-24 10:04:37.281 UTCd80fb6b7-8bf4-47e1-8f44-2a03441e85662012-05-23 09:22:12.952 UTC522e8f56-44cc-4dce-b9bc-55555eb4619e2012-08-28 12:52:48.710 UTC4a0bd72f-205f-4fe2-aabf-4811716d04a32012-05-28 15:35:32.913 UTC12676d8e-8e07-44a8-adc3-246bed5f719e2012-05-29 09:38:49.885 UTC1daa084e-c7a2-45cd-addb-b2021c866f682013-01-23 04:45:41.767 UTC92b50465-c47e-4f10-959f-6ac4ea4120692012-07-13 10:53:40.120 UTCe5e29e4d-d497-493a-9860-a8bd8d5657542012-05-24 07:11:13.72 UTC0aaa6f86-7652-4191-91b9-933364dc640f2012-05-28 13:39:00.742 UTC33f3d4e3-80a9-44ec-8cfb-f84ebc21051c2012-05-28 12:44:30.573 UTC1db5c6f1-a905-41a5-83c8-d8f79cd16ffd2012-05-28 14:17:31.656 UTC86aae19c-517c-4f16-a964-4031ae65dcb22012-07-13 19:05:49.202 UTCf2dd9a4a-91c0-4c6a-aff4-43041ef6f4af2012-05-24 10:07:59.36 UTCe2e11b86-8b2e-4567-8da8-f508470a72062012-05-24 10:05:09.857 UTC489c0706-b993-44cc-878e-02cd52c0757a2012-05-28 13:28:40.258 UTC8b743d45-0ed3-40af-b86c-621a622becd72012-05-25 15:13:17.443 UTC1a15a664-74ff-430c-8c5b-9a44b75c5d922012-05-24 10:24:32.110 UTCc98b52f2-07a9-41c1-93e2-537baaca690f2012-05-25 14:45:00.606 UTC663775b4-68ba-4dfe-8aa3-2a079a61805c2012-05-28 13:17:48.527 UTC0f479371-ee41-44bb-b265-76c85e6596532012-05-24 11:30:53.380 UTCb83cbe30-8827-445a-91f6-e00ed0d128342013-01-21 14:20:32.12 UTC63150755-7e2c-46fa-9b18-d0af094e6bdb2012-07-13 11:16:52.800 UTC892ce0b4-fffd-4962-a850-445e2afe54c92012-05-28 14:26:47.563 UTC78bad41f-3d43-4052-9e7f-5619cb2866bc2011-12-02 20:20:22.944 UTC9ffd5551-67e7-42d9-b857-a449592ca31a2012-07-13 11:48:52.784 UTC9392534b-c27e-4185-9572-110f7d720aa32012-05-29 09:29:57.333 UTC75a0e2b5-9b5d-469b-ad7b-c1714a700cea2013-01-22 18:33:27.609 UTC25b6de5f-396f-45c9-aaa2-e3277851f2c22011-12-05 09:29:51.46 UTC27e830a9-637b-4bf3-bf0e-d612272830a72013-01-23 20:41:20.839 UTC162f2322-5cc8-4872-992d-154c488ae2be2012-07-13 11:06:07.271 UTC9c66acfa-bc51-4c4a-aea4-52bbd719b3ee2012-05-28 12:55:01.606 UTC8dc439f6-ae2e-4484-9f61-d5913cbbc83e2012-05-24 11:21:29.155 UTC0550476f-da31-4066-b14f-f5f483f232fa2012-05-28 13:12:01.864 UTC9a5c4eb2-c8a0-4ab5-8733-2919f7a29c672011-12-04 20:23:12.582 UTC9fa557e0-a81d-4bb4-9f0f-1cbdfe7cc68e2012-07-13 03:11:34.351 UTC65ab3f38-4108-4074-b641-0f8dc4770bc42013-01-22 00:46:17.855 UTC1bb6dd60-a4c5-4e05-8e5e-84c9062b59fd2013-01-22 18:35:41.359 UTC4df0a34f-79f5-4db9-8139-c816c4e8dca42011-12-05 08:57:23.769 UTC51b686d7-a903-449c-b10e-789e3eacaa772012-07-13 12:02:05.16 UTCb9ef661f-7b1e-4cd0-ad78-1f5f480c8f392013-01-21 18:36:43.8 UTC63da0a3f-eb7a-4b96-a50f-476d09f0f6b82012-05-24 10:14:07.658 UTC98b01cc5-cc3c-4a1b-b6bb-cc4e69c053402011-12-05 12:35:10.779 UTCc23caeac-180a-417b-b101-afa124068d222012-05-24 11:18:13.132 UTCc70559bc-32ea-45d5-9e0c-5c165efb1dce2012-05-29 09:16:03.115 UTC6d2380e8-5477-48e8-9ed1-c82d71a347fc2012-05-24 11:32:30.203 UTC365e4908-2036-409a-96c8-ce2adb53049d2012-05-24 11:19:45.535 UTC7984a5dc-f5ce-4991-aac7-0f4e761341972011-12-04 20:31:49.46 UTCbaab0223-d7eb-45bd-b88a-add3ab069e7d2013-01-22 23:23:16.308 UTC8a7d22d5-e9ba-45b8-b0dd-017cb62649f32012-05-24 06:48:16.752 UTC4f478714-44cb-4f1a-8f6f-93b7153386e52012-05-28 15:14:57.799 UTCeeaad7ea-4fbd-4283-b58f-68f1e9bb2a3c2011-12-05 10:12:47.595 UTC74431655-80e2-4cf3-b348-6b63f016e5f32012-07-13 19:10:56.745 UTC49cf34cf-c5c0-4623-bf73-4a16d0750f9c2012-07-12 23:18:21.867 UTCfe69338b-803c-4d67-9aaa-b8710bd723172011-12-05 09:02:50.152 UTCea6091a1-78cb-41a5-932f-8123fa31fb242012-08-29 17:51:45.957 UTC81319528-5815-4f1b-8b64-aa4532c0354b2012-07-24 13:22:13.419 UTC65737da5-8b7f-4f23-88ab-d2da3ad8cd9e2012-07-09 14:26:27.567 UTCf070ba04-399b-4422-94e9-7ac859c74e0a2012-05-28 14:48:31.535 UTC7ffb408f-a8d9-4937-a761-0de05f695aee2012-05-28 13:15:23.516 UTC58640859-5834-45bc-8133-a44a208b0b222012-07-09 14:41:53.348 UTCc14f091a-a1b6-43a6-af28-7599b1ddd8b12012-05-24 07:08:23.312 UTCc43d0c46-4007-4474-a96e-17f9e6f946232011-12-05 12:39:09.738 UTCGenome-Wide Association studies (GWAS) with metabolomic phenotypes yield several statistically significant SNP-metabolite associations. To understand the biological basis of the association, scientists typically dwell on identifying genes in the vicinity of the SNP and the possible pathways that the gene participates in. The information needed to arrive at an understanding of the mechanistic basis of the association requires integration of disparate data sources. The purpose of this workflow is to take the GWAS output consisting of SNP-metabolite associations and return genes present in the vicinity of the SNP ( for example, ± 100 kb of the snp) and the pathways that these genes participate in. The user is provided with the choice of setting the flanking width to interrogate around the SNP.2012-08-29 18:12:10.517 UTC86c1c5b0-b948-4ef3-842e-ed08c6b9f6d92011-12-05 09:46:35.437 UTCd22656b0-2793-4ba7-8f90-1f80c27d54132012-07-10 12:46:34.516 UTC1f39dd51-fbda-49c3-b718-aeb0ff17961f2012-05-24 14:39:02.624 UTCa4414467-dc1d-49ce-9f35-ee643b2b0a922012-05-24 07:40:13.121 UTC42a8db21-13e9-427a-9ed4-3ec73e5d09ad2012-05-24 10:18:21.504 UTC139030fb-d44e-450a-904b-57eb97587c552013-01-29 23:10:21.513 UTCc65a9a3a-909c-42a3-83cf-edd32d2e7aa92012-05-23 09:39:51.321 UTCcf450f3d-440a-44fe-8f3e-8f512e410dea2013-01-21 17:49:53.754 UTC761dc8af-f42e-47b0-a69b-b68ee156be892012-05-24 11:35:02.275 UTCde94784e-ff3b-455a-b46d-115a3425f8702012-07-12 22:58:00.866 UTCd5acc483-c168-468a-b09f-aa0e5bdd691e2012-05-23 09:20:31.391 UTC01b0a1c2-2ea1-42fb-8f77-3102cb2029c32012-05-24 08:02:12.628 UTC799b2c7a-749d-4e85-96b8-57d4ce9d49a82012-05-28 13:49:09.988 UTC5b0b16b2-6159-4a45-8f0e-e61e52a42ed02011-12-05 12:50:24.222 UTC7b6b6168-7421-4b1a-93e6-b6903bf56c492012-07-13 04:55:09.867 UTC6dc63288-570b-4c6f-9d1b-3018852941bf2012-05-24 14:32:15.752 UTCc5edb75b-4a94-4aa8-80a7-05d5144327192011-12-05 12:41:04.327 UTC82caace9-db1a-4b08-8528-7fed9f4fe3e32012-07-13 02:54:14.662 UTC594f53e9-a4fd-422b-b11a-c95aeae12f6b2012-05-25 14:18:14.345 UTCe2cf19ae-7516-4842-9c8d-7243da52e6fd2012-05-28 13:23:25.66 UTC1f56ace0-7a91-4cdb-80d2-078c96175c7a2012-05-24 07:59:59.475 UTC47ef6c53-e808-453a-9b0d-24d677a14b292013-01-21 19:06:21.233 UTC07f68d25-cfa2-431a-a66f-7f30ffbef86c2012-05-29 07:46:27.651 UTCf3fd6d4a-3b5a-4b82-a980-54ffd3b55e7b2012-05-28 14:23:40.396 UTC72797bde-afec-453a-831c-bc752526ec9b2012-07-12 22:54:04.805 UTC8c224453-74af-4dc1-b033-04077f1fb5112013-01-22 01:41:10.640 UTCb31c16f3-c7f3-4f45-8808-dbcca22867612012-05-28 13:50:16.908 UTCfc7d0b18-95da-435a-a49c-bd4957d019292012-05-28 13:22:58.144 UTC56ab1507-d44d-4569-b627-7984fe3da0aa2011-12-05 08:55:56.457 UTC343ea31a-d25d-40e2-9d94-bb10630333392011-12-04 21:31:09.853 UTC09ff0ed8-017f-41e2-a5ac-8b25a86d18962012-05-24 07:14:01.348 UTC8c5e8e26-1959-47e8-931a-f3d6053545242011-12-04 20:25:27.361 UTC2ff5f42c-ad5d-4855-afb6-994d95b56ad52011-12-05 12:45:17.858 UTC9052cca1-3bac-456e-8964-bc5a97f24e122012-05-23 09:47:46.18 UTCa8101120-66aa-437d-9f54-7c75e8bcb4c62012-05-29 09:41:06.977 UTC815b4de2-2533-4c65-acc1-61570ff0b7db2012-05-28 14:46:29.632 UTC44ce7b0d-aacc-4d8b-a074-befeb5e37ad52012-05-28 13:44:39.89 UTC7e4d6ec1-007e-41b3-9b1a-39923c3843b62012-05-23 08:54:08.937 UTCec0e7612-1c64-4ad5-8679-1acb05a4402d2013-01-21 18:38:57.231 UTC04515fdf-982c-4719-be61-f40e956f141c2013-01-22 21:27:40.925 UTC323b72ad-2dad-491c-adcc-4b01f61d15c52012-07-13 03:48:12.471 UTCe7471436-942d-4d3e-98b2-65e15995183e2012-05-28 16:15:51.854 UTC4c1c8924-c2c3-4410-bf73-5db2e44359982012-07-09 14:51:20.747 UTCe2de6396-8637-4edd-97cf-dd67d9c9a1882013-01-21 18:31:06.282 UTC934a7783-3866-49c3-be45-9f6c00f25f042012-05-28 13:42:43.45 UTC4c18297b-d76f-494c-8e02-db4f29a0bb0d2012-05-29 07:52:34.240 UTCc56efe86-559d-4878-be09-c8fe762aa0322013-01-22 01:13:40.650 UTCfe2b3810-d054-405f-8693-866dde2fcc602012-05-24 10:26:45.775 UTC2ce8d6ce-78ef-4ba3-93f3-ae418cb04a042012-05-24 11:37:44.705 UTC3d9a2e4e-9eaf-46ef-ac71-9ba04a52c4ba2011-12-04 20:51:57.350 UTC681bb15e-0cb0-4d46-b94d-50c8af23d5822011-12-05 10:05:00.123 UTCb997e938-3b2d-4ac3-a0ec-b90fa5ecfb862012-05-24 07:56:27.406 UTC93602cc4-585d-434c-99f1-de25ffa087712012-07-12 23:08:39.267 UTC0451f80c-fe7f-49b1-bb8c-9c26794e810e2013-01-22 00:31:43.152 UTC45f3551e-d015-4ca6-b0df-e1607fa965b02012-05-28 14:22:00.164 UTCc412f440-ef73-4927-9219-fa5c5c2ab2b12013-01-29 22:34:03.278 UTC67bf7e76-47ea-4757-9d02-de763fba160b2012-07-13 11:25:00.588 UTC354bd383-3970-46e5-a69d-756f249db3fd2011-12-02 20:06:00.39 UTCe421f76c-a367-48df-bd76-f1e283b3c15a2013-01-29 23:32:41.522 UTCf6370d45-5817-4828-98e5-8fa459e528762012-05-28 13:30:49.145 UTCbb845add-ef95-4621-ba20-7cdbcfd8895c2012-05-28 14:30:06.480 UTC9d9f8d6e-d1d7-4eed-957b-06cfbda544bf2013-01-29 22:36:49.631 UTC8481be24-7358-4c81-a8fc-2b2b89f0069e2012-07-14 03:17:33.803 UTC16ea68c5-c95d-4d0e-b08e-ea5c296e1ab32012-05-24 07:16:16.281 UTC2df74fd6-bad1-407a-96ed-5d789a5d790d2012-07-12 22:38:14.266 UTCbd87bc54-b86c-48c1-9bcc-0d943cad671e2011-12-02 19:52:46.244 UTC225c56b9-df03-416e-bfef-ba2eb57a22cc2012-05-24 11:45:35.231 UTCa26f21c0-c5db-44b1-827c-d5f5533fb71a2013-01-21 19:36:00.520 UTC92446b4f-a77a-40b3-ac48-d594e65ca32a2012-08-28 12:45:58.86 UTCc0b817e8-664b-4f21-8737-6cdde6c33e722012-07-13 20:13:19.177 UTCdac0d18e-8eed-41d5-82c9-fea7dda921cc2013-01-23 04:46:30.659 UTC2f2cdb4e-8d9a-4fae-826b-09049e317d3e2012-07-24 12:10:49.441 UTCa9221629-d5b6-460f-89db-3cb48f9f60342012-08-29 17:57:55.615 UTCd7b84de5-d36a-4090-8ab4-d37dde019b322012-05-28 14:18:44.466 UTC08489858-3622-42b4-8645-a7508a5a7eea2012-05-24 11:49:05.799 UTCbccb19ff-4ec7-48a0-ac70-c04c1b1c0ad12012-05-24 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UTC57237b54-36f7-4a2c-9833-4ab73bf3cea92011-12-02 20:06:32.660 UTC7aa641e8-23f2-447d-a8df-3310d951ac7b2013-01-22 02:32:51.138 UTCa8ff4a9e-1161-41d9-b903-4d1fd1fd25e42012-05-29 09:13:08.665 UTC8a72c4e8-34e8-4850-99d8-7edfef99eb592012-07-10 16:28:46.151 UTC3dda2869-f2ca-4f37-a425-f527242e18162013-01-22 13:28:42.555 UTC6ee5dac9-47db-4acf-8de3-4baf71ac2e0e2012-05-24 07:12:27.913 UTCeedbb948-296f-448a-baec-81e9fe57a61f2012-05-24 06:58:44.89 UTC780ac0b7-a424-49aa-9a7f-deb714fb52a62012-05-28 13:48:07.271 UTC43260d53-f13f-4b02-8755-96eb198c7a132012-05-28 13:42:07.264 UTC2082c444-8dc5-491d-98f0-a38e48f14ad22012-05-28 14:58:09.975 UTCd7ddba62-2e21-4c6d-aaba-6bd5600af8b02012-05-29 09:45:01.263 UTC442fbd70-6edc-4aac-a52a-1e28af3918832011-12-02 20:21:29.89 UTC1a646255-725f-4301-a6bf-36c1ac11b77e2013-01-22 01:04:50.414 UTCc5bd0205-5369-43d1-99b8-97d96b84f5152012-05-24 10:25:41.575 UTCbfd2dad7-f2a2-444c-b41c-cd7e7b1419b62012-08-29 17:44:03.978 UTCaa1e05f9-bef7-4a1e-9137-f9a139fc63282012-05-28 16:17:11.384 UTCad7a20f3-6db0-433c-a89b-7bc51981d4402013-01-23 09:51:26.181 UTC3b268f07-e232-491d-874d-fdcb50b1210f2012-05-24 06:49:32.736 UTC4e8abbc2-c7d4-4763-a86a-b9238bc71a0a2012-05-23 09:46:24.941 UTCc6954af8-29d3-49f2-9034-38847f1dd8902012-05-28 14:28:31.311 UTC821e379f-0aaf-4220-8d6c-83517950317f2012-05-25 15:10:34.774 UTC5feed474-e086-436c-9dc8-547e6f6648bc2012-05-25 14:20:34.984 UTC06ea5d6f-5cb6-4da7-8c34-66c9a16da0f62013-01-22 21:13:24.462 UTCde5376be-26df-4424-82f6-735797ecbb4d2011-12-04 19:54:39.289 UTCf02a8cf2-7757-4252-b5ac-ad6729f9d80f2011-12-05 08:51:49.367 UTCHarish Dharuri2012-08-28 12:32:45.891 UTC87ea0a35-0f9e-4fdb-bf4f-29dafeab759e2011-12-05 09:20:36.359 UTC55699458-d13b-44c4-88a3-00b9a94d4bfd2011-12-04 20:29:57.352 UTC689a09b4-747d-4616-8bea-f7d4c9cfad1d2012-05-29 08:00:06.553 UTCb24b56c6-07da-42d1-b0ad-6560093cf6b72013-01-22 18:07:21.976 UTC400ed11a-24fd-457a-a9b7-cc3ef85e8ad72012-05-24 11:44:12.16 UTC6cba3d8f-b595-4757-8de7-d6c413032b292012-05-29 09:57:51.420 UTC68b6a3a4-b582-4e29-9b7f-29c44c5c265b2012-05-28 13:32:12.424 UTC178f4858-1d1d-4749-993b-5c50c35fce9e2012-05-29 09:34:11.328 UTC04371b1b-18bd-4405-a82d-c3db639977a02011-12-04 20:35:38.750 UTC73ef94bb-6b99-402a-9305-e57e5ce4f5dc2012-07-13 10:41:55.216 UTCe1852394-62d4-4ebf-b574-803b0a8e92762012-05-24 06:52:22.865 UTC8a9d0600-5882-4aae-949d-9eb085ad77812012-08-29 18:10:37.197 UTCfef62021-666b-465c-8cf1-352a75ae68ab2013-01-22 00:50:17.378 UTCGene_to_PathwaySNP00chromosome00chrom_start00chrom_end00output_tableConvert_to_Kegg_idstring0out100net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivitystring0text/plainjava.lang.Stringtrueout100workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_6inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivityinputlist2l(l(''))[Btrueoutputlist1l('')1workfloworg.embl.ebi.escience.scuflworkers.java.FlattenListnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_3inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivityinputlist2l(l(''))[Btrueoutputlist1l('')1workfloworg.embl.ebi.escience.scuflworkers.java.FlattenListnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeget_compoundquery0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivityGEThttp://rest.kegg.jp/get/{query}text/xmlapplication/xmlStringfalsefalsefalsefalsetruequeryjava.lang.Stringnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeextract_pathway_from_compounds_filein10out111net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivityin10text/plainjava.lang.Stringtrueout111out211workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokealign_snp_gene_pwyin21in10out111net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivityin10text/plainjava.lang.Stringtruein21text/plainjava.lang.Stringtrueout111workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List_7inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivityinputlist2l(l(''))[Btrueoutputlist1l('')1workfloworg.embl.ebi.escience.scuflworkers.java.FlattenListnet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokealign_snp_gene_and_extract_gene_idin10in21in31out111This beanshell aligns the input snp ids with the corresponding genes present in the vicinity.2012-08-29 17:57:01.249 UTCnet.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivityin10text/plainjava.lang.Stringtruein21text/plainjava.lang.Stringtruein31text/plainjava.lang.Stringtrueout111workflownet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehsapiens_gene_ensemblhsapiens_gene_ensembl.chromosome_name_filter0hsapiens_gene_ensembl.start_filter0hsapiens_gene_ensembl.end_filter0hsapiens_gene_ensembl.entrezgene10hsapiens_gene_ensembl.hgnc_symbol10This is a Biomart service that takes the chromosome name and start and end positions and returns genes (entrez gene id) present in the region.2012-08-29 17:56:03.919 UTCnet.sf.taverna.t2.activitiesbiomart-activity1.4net.sf.taverna.t2.activities.biomart.BiomartActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize1net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry1.0100050000net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConvert_to_Kegg_idstringFlatten_List_6inputlistFlatten_List_3inputlistget_compoundqueryextract_pathway_from_compounds_filein1align_snp_gene_pwyin2align_snp_gene_pwyin1Flatten_List_7inputlistalign_snp_gene_and_extract_gene_idin1align_snp_gene_and_extract_gene_idin2align_snp_gene_and_extract_gene_idin3hsapiens_gene_ensemblhsapiens_gene_ensembl.chromosome_name_filterhsapiens_gene_ensemblhsapiens_gene_ensembl.start_filterhsapiens_gene_ensemblhsapiens_gene_ensembl.end_filteroutput_tablePurpose:
Get KEGG pathways for the genes within a region around the SNPs that were derived from a GWAS, using a BioMart service.2013-01-29 21:59:23.198 UTC95bafc45-26db-481b-b684-1faa810953222013-01-29 22:20:05.107 UTCMarco Roos2013-01-29 21:57:56.844 UTCGene to Pathway2013-01-29 21:58:05.707 UTCabd08f5d-deef-47a4-9212-66028ecb040e2013-01-29 21:59:43.663 UTCaec28eb5-0d90-4601-9104-128d03e39b072013-01-29 22:07:16.961 UTC