Define_with_PartitioMSA_fasta00 >ABY27676/1-453 ABY27676 ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------TTAATATTAGGA GCTCCAGATATAGCTTTTCCTCGAATAAATAATCTTAGTTTTTGGTTGCTTCCTCCTTCTTTGATTTTATTA ATAATTTCTTCAATAGTGGAGATAGGGGTTGGGGCGGGGTGAACTATTTATCCTCCTTTATCGGGTAGTCTA GGTCATTCAGGGGTTTCAGTAGATTTAGCTATTTTTAGCTTACATTTGGCGGGAGCTTCTTCAATTATAGGA GCAATTAATTTTATTTCCACTATTTTAAATATACGTTCAGTTGGGATATCTATAGATAAGGTACCTTTATTT GTGTGATCTGTATTAGTTACTGCTGTTTTATTATTATTATCTTTACCAGTTTTAGCCTGGGGTATTACGATA TTATTAACAGATCGAAATTTTAACACTTCTTTTTTTGACCCTGCGGGTGGAGGTGATCCAATTTTATTTCAA CATCTTTTT >ADW61587/1-657 ADW61587 ACGTTATATTTAATATTTGGGGCTTGAGCTGCTATAGTAGGAACAGCCATAAGAGTATTAATTCGAATTGAA TTAGGTCAACCTGGGAGGTTTATTGGGGATGATCAATTATATAATGTAATCGTTACTGCTCATGCATTTGTT ATAATTTTTTTTATAGTAATACCTATTTTGATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATATTAGGC GCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGCTACTCCCTCCTTCATTATTTTTATTA ATTATTTCTTCTATAGTAGAAATGGGAGTGGGGGCAGGATGGACGGTTTATCCTCCTTTAGCTAGTTTAGAG GGCCATGCTGGCAGGTCAGTGGATTTTGCTATTTTTTCTTTACATTTAGCGGGGGCCTCCTCTATTATGGGG GCTATTAATTTTATTTCTACTATTATTAATATACGATCGCATGGAATAACTATAGAAAAAGTACCTTTATTT GTATGATCAGTATTGATTACTGCTGTATTATTATTATTATCACTTCCAGTATTGGCGGGGGCTATCACAATA TTATTAACTGATCGAAATTTTAATACTTCGTTTTTTGACCCTTCAGGAGGGGGGGATCCAATCCTTTTCCAA CATTTATTT >AEE92862/1-657 AEE92862 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATGGTAACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATA TTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAG CATTTATTT >AEC60810/1-657 AEC60810 ACTTTGTATTTATTGTTTGGTATTTGATCTGCTATAATGGGAACGGCAATAAGAGTGATTATTCGAATTGAA TTAGGTCAAGTTGGAAGATTGTTGGGTGATGATCATTTATATAATGTAATTGTAACAGCACATGCTTTGGTT ATGATTTTTTTTATAGTTATACCGATTTTGATTGGTGGATTTGGAAATTGAATAGTTCCTTTGATGTTAGGT GCTCCAGATATAGCATTCCCACGTATAAATAATTTGAGATTTTGATTGCTTCCTCCATCATTATTTTTGTTA TTATTATCTTCTTTAACAGATGTAGGGGTTGGAGCCGGGTGAACTATTTATCCTCCTTTATCCTCTGGGGTT GGACATAGAGGGGGGGGGATGGATTTTGCTATTTTTTCTTTACATTTAGCAGGAGCTTCATCTATTATAGGG GCGATTAATTTTATTACAACAATTATTAATATGCGAAGATTTGGAATAACAATAGAACGTGTACCTTTATTT GTGTGATCAGTTCTTATTACTACTATTTTATTATTGCTTTCTTTACCTGTATTGGCTGGTGCTATTACTATA TTGTTGACTGATCGAAATTTCAATACTTCTTTTTTTGATCCTGCTGGAGGTGGTGATCCTATTTTGTTTCAA CATTTATTT >AEE92861/1-633 AEE92861 ------------------------TGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAATATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >AEE92860/1-648 AEE92860 ---------TTTGTTTTTGGAGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >ADD09384/1-555 ADD09384 ------------------------------------------------------------------------ ------------------------------TATCAGCTATACAATGTATTAATTACCGCTCATGCTATAATT ATGGTATTTTTCATGATTATGCCAGCTTTATTTGGTGGATTTGGTAATTACTTTGTACCAATTTTAATAGGT GCCCCGGATATGGCTTTTCCTAGGCTAAATAATATAAGTTTTTGGCTACTTGTCCCTGCTTTTATATTATTA ATGCTGTCAGGTTTGGTTGATGGAGGAGCTGGTACTGGCTGGACACTGTATCCTCCTCTAAGTAGTATAGTA GGGCATCCTGGCGCTGCTGTCGATATGGCTATTTTAAGCTTACATCTTACAGGGCTTTCCTCCATTCTTGGT TCAATTAATATGATTGTCACTATCTTTAATATGAGAACTGATGGTATGGGGTTATTTGAAATGCCCTTATTT GTTTGGTCAATTTTGGTTACTGCCTTCTTGCTGATACTAGCAATTCCTGTGTTAGGGGGTGCAATAACCATG TTACTGACTGATCGAAATTTTGGTACTACTTTTTTCAAGCCTGATGGTGGCGGAGATCCAGTGTTATTTCAG CATTTATTT >ADJ82639/1-645 ADJ82639 ACTTTATATTTAATGTTTGGGGTTTGGTCAGCTATAATAGGAACTGCTATAAGAGTATTAATTCGAATGGAA TTAGGGAATCCTGGTAGATTGTTAGGTGATGATCATTTGTATAATGTTATAGTTACTGCTCATGCTTTTGTA ATAATTTTTTTTATAGTAATGCCTATTCTTATTGGAGGTTTTGGAAATTGATTAGTTCCTTTAATATTAGGA GCTCCAGATATATCATTTCCTCGAATAAATAATCTTTCTTTTTGATTATTACCTCCTTCTTTATTTTTGTTA TCTATATCTTCTATAGTAGAAATAGGAGTTGGGGCTGGGTGAACTGTTTATCCTCCTTTAGCGTCTACAGTT GGGCACATAGGAAATTCAATAGATTTTGCTATTTTTTCTCTTCATTTAGCTGGAGCTTCTTCTATTATAGGA GCTGTAAATTTTATTTCTACCATTATTAATATACGAATATTAGGAATATCTATAGAGAAGGTTCCTCTTTTT GTTTGATCAGTTTTAATTACAGCAGTATTATTATTACTTTCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACAGATCGAAATTTTAATACTTCTTTTTTTGATCCTGCTGGGGGAGGAGATCCTAATTTATTT--- --------- >ADQ21240/1-648 ADQ21240 AGATTATATTTTGTTTTTGGGGCTTGAGCTGCTATAGTAGGAACAGCAATAAGAGTATTAATTCGTGTTGAG TTGGGACAAACTGGTAGTTTGTTAGGGGATGATCAGTTGTATAATGTTATTGTTACGGCTCATGCTTTTGTA ATAATTTTTTTTATAGTTATGCCTATTTTAATTGGGGGTTTTGGAAATTGGCTGATTCCACTAATACTAGGA GCTCCGGATATAGCTTTCCCTCGTATAAATAATTTGAGATTTTGGCTTTTACCCCCTTCTTTATTATTACTG TTTATTTCAAGCATAGATGAGATAGGAGTGGGGGCGGGATGAACGGTTTACCCCCCTCTTGCCTCTTTAGAG GGACATTCTGGTAGTTCAGTAGATTTTGCTATTTTTTCTTTACACTTAGCTGGAGCGTCTTCTATTATAGGG GCTATTAATTTTATTTCCACAATTTTGAATATACGGGGTTATGGAATATCTATAGAAAAAGTACCTTTATTT GTTTGGTCCGTGTTAATTACAGCTGTATTATTATTGTTATCTCTTCCTGTGTTAGCTGGGGCTATCACAATA TTACTGACGGATCGTAATTTTAATACTTCATTTTTTGATCCTTGTGGGGGGGGGGATCCTGTTTTGTTTCAA --------- >AEE92882/1-657 AEE92882 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATTGTAACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATA TTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAG CATTTATTT >ADW58691/1-657 ADW58691 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAA TTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTT ATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGT GCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTATTACCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATAGTTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTA GGTCATATGGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGA GCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTT GTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAA CATTTATTT >ADW58631/1-657 ADW58631 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAA TTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTT ATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGT GCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTACTACCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATAGCTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTA GGTCATATAGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGA GCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTT GTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAA CATTTATTT >ACM89220/1-657 ACM89220 ACTTTATATTTTTTATTTGGTACTTGATCAGCAATAATTGGTACAGCAATAAGTGTTTTAATTCGTGTTGAA CTAGGATTTTCTGGAAGATTTTTAGGTGATGATCATTTATATAATGTAATTGTTACTGCTCATGCTTTTATT ATAATTTTTTTTATAGTTATACCTATTTTAATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAAGA GCTCCAGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGTTACTACCTCCTTCGTTATTATTGTTA TTTATTTCTTCTATGGTTGAAATCGGAGTTGGAGCAGGGTGGACTATTTATCCTCCTTTATCTTCTTCTGTG GGTCATTCTGGTGCATCTATGGATTTTGCAATTTTTTCTCTTCATTTAGCTGGTGCTTCTTCTATTATAGGT GCTATTAATTTTATTTCAACAATTATTAATATACGACCTTATGGTATAAGAATAGAAAAGATTCCTTTATTT GTATGATCTGTATTAATTACAGCTGTCTTATTATTATTATCATTACCAGTATTAGCTGGGGCTATTACTATA CTTTTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCAGCTGGGGGTGGGGATCCAATTTTATTTCAG CATTTATTT >AEE92867/1-642 AEE92867 ---------------TTTGGGGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >ADH12119/1-645 ADH12119 ACTTTATACTTGGTTTTTGGTGCTTGAGCGGCTATGGTTGGAACTGCAATAAGTGTTTTAATTCGAATTGAG TTGGGGCAATCTGGTAGATTTATGGGAGATGATCAGTTGTATAATGTTATTGTAACTGCTCATGCTTTTGTT ATAATTTTTTTTATGGTTATGCCTATTTTGATTGGGGGCTTTGGTAATTGACTGGTTCCTTTGATGTTGGGG GCTCCTGATATGGCTTTTCCTCGCATGAATAATTTAAGGTTTTGATTATTGCCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATGGTGGAAATAGGGGTTGGGGCTGGTTGAACGATCTACCCTCCTTTAGCGTCTCTAGAA GGACATTCAGGAAGTTCGGTTGATTTTGCCATTTTTTCTTTGCATTTGGCTGGGGCCTCTTCTATTATAGGG GCTATTAATTTTATTTCTACAATTTTGAATATACGGTCTTATGGGATGTCTATGGAAAAAGTTCCTTTGTTT GTTTGGTCGGTTTTAATTACTGCTGTTTTGCTCCTATTATCACTTCCGGTTTTAGCTGGGGCTATCACTATG TTATTAACTGATCGAAATTTTAATACATCGTTTTTTGATCCTTCGGGGGGAGGGGATCCTATTTTTTTT--- --------- 2013-02-19 10:49:56.589 UTC Multiple Sequence Alignment in Fasta format 2013-02-19 10:49:24.341 UTC PossiblePartition00 Partitioning of the MSA using nexus/raxml syntax 2013-02-19 10:49:04.53 UTC Gene1_pos1 = 1-657\3; Gene1_pos2 = 2-657\3; Gene1_pos3 = 3-657\3; 2013-02-19 10:48:53.331 UTC Plot Result of the Posterior Predictive test. Histogram of the distribution of the complexities (log of sum of sites entropy or maximal possible loglikelihood score) of the simulated data using the posterior distribution parameters compared with observed data complexity. The 1-alpha high posterior density of the distribution show the region where simulate data complexity match the observed one. Larger observed complexity indicates model too simplistic, while the contrary indicates overparametrization of the model. 2013-02-19 10:52:20.291 UTC newickTree small xml with tag res with one or more tag tree each one with a body that contain a tree in netwick format. each tree represent the consensus for a given partition of group of partition in the same order that are cited in the nexus input file of mrbayes 2013-02-19 10:51:48.519 UTC <res><tree>(ADD09384_1_555_ADD09384:1.18452,ABY27676_1_453_ABY27676:0.16674,(ACM89220_1_657_ACM89220:0.16271,(ADJ82639_1_645_ADJ82639:0.15654,(ADW58631_1_657_ADW58631:0.00298,ADW58691_1_657_ADW58691:0.00584)1.00:0.07383)0.98:0.04988,(ADW61587_1_657_ADW61587:0.10163,(ADH12119_1_645_ADH12119:0.14993,ADQ21240_1_648_ADQ21240:0.15645)0.90:0.06174)0.89:0.07555,(AEC60810_1_657_AEC60810:0.13396,((AEE92862_1_657_AEE92862:0.00180,AEE92882_1_657_AEE92882:0.00294)0.93:0.01820,(AEE92860_1_648_AEE92860:0.00172,AEE92867_1_642_AEE92867:0.00260,AEE92861_1_633_AEE92861:0.00326)0.85:0.01568)1.00:0.18625)0.99:0.14972)0.63:0.13345);</tree></res> 2013-02-19 10:51:25.542 UTC Geoks Restul of the GeoKS test of convergence. XML format 2013-02-20 12:54:07.319 UTC <result><success>True</success><burnin>16</burnin><pvalues>0.962205</pvalues></result> 2013-02-20 12:54:16.872 UTC DefineAndSubmit_Phylogenetic_inferPossiblePartition0MSA_fasta0JobID66NexusFileName00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRetrieveANDValidatePhylogenetic_inferJobID0NexusFileName0GeoKS_Result22newickTree55Plot77net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDefineAndSubmit_Phylogenetic_inferPossiblePartitionPossiblePartitionDefineAndSubmit_Phylogenetic_inferMSA_fastaMSA_fastaRetrieveANDValidatePhylogenetic_inferJobIDDefineAndSubmit_Phylogenetic_inferJobIDRetrieveANDValidatePhylogenetic_inferNexusFileNameDefineAndSubmit_Phylogenetic_inferNexusFileNamePlotRetrieveANDValidatePhylogenetic_inferPlotnewickTreeRetrieveANDValidatePhylogenetic_infernewickTreeGeoksRetrieveANDValidatePhylogenetic_inferGeoKS_Result 0a9f163f-c9f6-482e-9e48-76b1971e6520 2013-02-20 12:54:19.239 UTC ac29b67c-ac1b-430a-afda-982bce0fc451 2013-02-20 14:14:06.10 UTC Phylogenetic inference with MrBayes. The the model of evolution is defined with the help of PartitionFinder, inference and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test) 2013-02-20 14:13:46.513 UTC b80541d1-48a8-4314-9512-98cb5fe1c276 2013-02-20 12:52:49.895 UTC c588ab33-7f5a-459a-8fad-f9d4bac96b63 2013-02-20 11:58:19.43 UTC 2813a541-7010-4115-84db-39c44a20c425 2013-02-20 14:17:55.124 UTC 209b2582-51a0-46a2-a9c0-95d84a951f78 2013-02-20 12:20:20.688 UTC cd487d97-579b-41f4-8bc6-88371a1703df 2013-02-19 10:52:29.614 UTC saverio vicario giacinto donvito bachir balech 2013-02-19 10:54:10.67 UTC 5dfb9d2c-95e6-415d-8c9f-847ec107140e 2013-02-19 16:37:16.674 UTC 2e735a0a-988b-4bba-9e5d-f02944cd0d24 2013-02-19 11:04:22.96 UTC 03d8d882-866c-4a86-85f1-1c0a266fcfa1 2013-02-19 17:17:37.373 UTC c5490cfd-6edc-4a98-9707-0156b575bc8f 2013-02-20 08:09:23.860 UTC Define with PartitionFinder, infer and validate Phylogeny - short run 2013-02-20 14:17:52.154 UTC fdebe370-df01-45ee-b953-d307ea7f7611 2013-02-20 12:57:15.288 UTC 46ead065-bb6f-41d4-af8c-bb7ccffc75e3 2013-02-19 10:50:28.376 UTC a0fabd4f-2e8f-4a2d-bc13-734d4245e0b4 2013-03-25 14:41:42.947 UTC 28272e3a-e84b-43b1-86d1-719387da9aa6 2013-02-20 09:36:45.90 UTC b65fb5fb-4c3b-40ed-a1e5-d2885cb2a39b 2013-02-20 12:18:35.247 UTC Workflow1File_name00InputBody00REST_Service_responseBodyREST_Service_statusREST_Service_redirectionREST_Servicefile_name0inputBody0responseBody00status00redirection00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity PUT http://testjst.ba.infn.it/openacces/{file_name} application/xml application/xml String false true false false true file_name java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_Servicefile_nameFile_nameREST_ServiceinputBodyInputBodyREST_Service_responseBodyREST_ServiceresponseBodyREST_Service_statusREST_ServicestatusREST_Service_redirectionREST_Serviceredirection b418f0df-28b8-497e-ac5d-a4b478911bd0 2012-05-01 08:36:38.8 UTC 8d4c37f0-a10b-465e-81aa-1c09938a3473 2012-05-01 08:37:47.922 UTC aff47fd7-0af5-47c0-afc2-a6f5ab27b564 2012-04-30 14:16:40.142 UTC 517fa4a1-06ee-4bd7-980e-5f63e13c2fb2 2012-05-04 08:52:59.585 UTC 0ad720e2-8bbd-4aed-96f5-756381173980 2012-04-24 12:19:06.97 UTC 30603428-46fc-4411-9a3a-d5aad4146001 2012-05-10 07:16:32.601 UTC 288673db-e11c-4f6a-be9c-57b0c212979d 2012-04-30 14:48:27.139 UTC 3008dc09-c8be-45bc-918b-7bb95f63c51d 2012-05-24 16:25:38.215 UTC d6bd51d4-54a3-4e41-ab79-ee29ecca40cf 2012-05-03 15:34:45.183 UTC d1b49247-0c82-443c-acb1-bab1044296f4 2012-04-30 14:42:33.401 UTC 24d62224-217d-46d0-a08a-06b0d60caec4 2012-05-02 07:59:24.107 UTC ce6b1735-eb91-4d53-8e9b-ff43089857cd 2012-05-02 12:54:46.975 UTC acb3452e-6be0-4669-9e84-22808ff471cc 2012-05-03 15:46:36.879 UTC 90744424-a1a0-4107-b358-5e931c677e4a 2012-05-01 08:35:44.460 UTC 2ee8114d-7999-4833-ba39-97ddb6ff067c 2012-05-03 15:43:09.120 UTC d5aa2bb0-c984-456c-9ec2-df78463f1914 2012-05-01 08:39:00.787 UTC Workflow36JobID00StatusOutputStandardOuputREST_Service_2JobID0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET http://alicegrid17.ba.infn.it:8080/INFN.Grid.FrontEnd/services/QueryJob/SelectJob?IdJob={JobID} application/xml application/xml String false false false false true JobID java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_2xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Jobs><Job><Arguments>http://webtest.ba.infn.it/vicario/FinalFusariumDB_2.nex 5700.fa 10589.fbsse se selknlk noiho niooih r </Arguments><Comment>interactive</Comment><CPUs>7</CPUs><Flag>2dbbd030-2803-43c0-a21d-369a21e17f2b</Flag><Id>349177</Id><LastCheck>2011-11-18 12:54:01.0</LastCheck><Name>MyBlasts</Name><Output/><Provenance/><Status>free</Status></Job></Jobs> /Jobs/Job/Status net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1seperator0concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeseperator_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_2_2xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Jobs><Job><Arguments>http://webtest.ba.infn.it/vicario/FinalFusariumDB_2.nex 5700.fa 10589.fbsse se selknlk noiho niooih r </Arguments><Comment>interactive</Comment><CPUs>7</CPUs><Flag>2dbbd030-2803-43c0-a21d-369a21e17f2b</Flag><Id>349177</Id><LastCheck>2011-11-18 12:54:01.0</LastCheck><Name>MyBlasts</Name><Output/><Provenance/><Status>free</Status></Job></Jobs> /Jobs/Job/Output net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_2stringlist1seperator0concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_2_2_2xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Jobs><Job><Arguments>http://testjst.ba.infn.it/giacintoAraneaeNuc.fas 1,2,5 2e-10</Arguments><Comment>interactive</Comment><CPUs>1</CPUs><Flag>46d409fa-c716-4e69-8e2d-0286a2ddd11c</Flag><Id>454291</Id><LastCheck>2012-04-30 11:53:07.0</LastCheck><Name>ProfileFrameFinder</Name><Output/><Provenance/><StadardOutput> </StadardOutput><Status>2104118383</Status></Job></Jobs> /Jobs/Job/StadardOutput net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_Service_2JobIDJobIDXPath_Service_2xml_textREST_Service_2responseBodyMerge_String_List_to_a_StringstringlistXPath_Service_2nodelistMerge_String_List_to_a_Stringseperatorseperator_valuevalueXPath_Service_2_2xml_textREST_Service_2responseBodyMerge_String_List_to_a_String_2stringlistXPath_Service_2_2nodelistMerge_String_List_to_a_String_2seperatorseperator_valuevalueXPath_Service_2_2_2xml_textREST_Service_2responseBodyStatusMerge_String_List_to_a_StringconcatenatedOutputMerge_String_List_to_a_String_2concatenatedStandardOuputXPath_Service_2_2_2nodelist cdf36b60-31c3-441b-85ad-e8b0d3ede120 2011-11-30 16:25:32.213 UTC d55f213c-926c-42e9-8661-b736e95873aa 2011-11-30 16:18:57.829 UTC 2d403c97-a8ff-4771-af6a-87a0acb58104 2012-05-04 09:54:50.672 UTC a86eb045-aff2-46b1-ad28-5aaa0ca632c8 2011-11-30 17:07:17.999 UTC 5aef3e63-9bb3-4905-9214-52026f781425 2011-11-30 16:10:33.343 UTC c449dc7c-7655-484b-a369-a771da9a838b 2012-04-02 16:08:18.498 UTC Workflow14Name00Argument00StatusOutput_PathXML_ReportREST_Servicename0arguments0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET http://alicegrid17.ba.infn.it:8080/INFN.Grid.FrontEnd/services/QueryJob/InsertJobs?NAME={name}&arguments={arguments} application/xml application/xml String false false false false true arguments java.lang.String name java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Job><Name>blast</Name><Flag>7772590c-d7ab-4b76-98b9-aa293c6c34fe</Flag><JobsID><JobId>454118</JobId></JobsID></Job> /Job/JobsID/JobId net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow36JobID0Status00Output00StandardOuput11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>Status</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + ! Status.equals("done"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_ServicenameNameREST_ServiceargumentsArgumentXPath_Servicexml_textREST_ServiceresponseBodyWorkflow36JobIDXPath_ServicenodelistStatusWorkflow36StatusOutput_PathWorkflow36OutputXML_ReportWorkflow36StandardOuput 25d638c9-672c-498e-913b-4bceb4230f8e 2011-11-30 17:10:59.924 UTC e4960fd7-230d-477c-b7d0-c78c52b1924a 2012-11-28 17:15:39.209 UTC a3848c5b-b720-4bc7-8e8a-d0a4e305b43f 2012-04-02 16:09:05.883 UTC b9cf606e-166f-471c-b51e-d2f517526ad1 2011-11-30 17:00:56.590 UTC be8cd221-9345-4c91-9fb4-b413978b0a6a 2011-11-30 16:05:00.470 UTC 0ca845f5-dbee-4c11-8b69-2843a6c7e40e 2012-05-03 15:26:02.481 UTC 4afab38a-1fec-43b4-8a32-83eaa59e8b8d 2011-11-30 15:53:41.975 UTC 7b7863ae-a026-4317-8084-9a00049fccf8 2012-04-05 11:23:09.57 UTC a2b6b247-c946-4883-8d6d-469ea6573f93 2011-11-30 15:51:07.192 UTC e43a348a-e348-4438-8177-6417a492404c 2012-10-02 09:13:25.977 UTC eb0a0648-1196-4215-b698-acb8729bf045 2011-11-30 15:47:24.13 UTC 38b1f6f3-d29c-408a-9360-46930d61cff7 2012-05-04 09:55:44.596 UTC e2682dca-1389-49ad-a886-491fa918d268 2011-11-30 15:54:01.684 UTC bda5ff28-ff17-4ff2-9191-13acd55b73f3 2011-11-30 17:07:35.484 UTC bcc60618-7449-4965-b39d-d0d6d90ec7db 2011-11-30 15:49:46.56 UTC 857db6d7-3775-4738-bf94-5c6a78c1fb8b 2011-11-30 16:00:08.58 UTC 2bb836b5-2738-4f3f-864d-5a77e76bdd1f 2011-11-30 17:09:13.282 UTC 15c52e11-e32b-46b2-857c-89226396dc45 2011-11-30 15:41:58.998 UTC 3aba8bc3-36ee-473d-a504-288a1f9998df 2011-11-30 16:07:49.591 UTC 3c9f8d96-0c37-4a18-8214-289acc1482fb 2011-11-30 16:02:25.713 UTC 745b7346-e8be-4864-ba02-1ae1d255f50d 2012-04-05 09:28:59.571 UTC 36001f84-a643-4173-80ee-118a0ceaecbc 2011-11-30 17:10:08.264 UTC 5f07e956-6857-4261-ae1e-1ab5ba32ab08 2011-11-30 16:07:05.176 UTC 97c8a203-1938-4e3f-90f3-87694c3a795a 2011-11-30 15:59:45.57 UTC 0b2a7cd3-3853-434d-b462-4a2d7796ea7d 2011-11-30 15:48:49.960 UTC bed4b280-a552-4ad9-8bfe-54a2fabae11f 2012-04-05 09:41:33.486 UTC 8a70d234-45be-42bd-8bff-039af9b1c962 2011-11-30 16:26:18.954 UTC a65689de-3539-4833-9e3e-c32aa9237d39 2011-11-30 15:52:17.202 UTC 4cc9395d-b178-451b-aef7-a34678d0d490 2011-11-30 15:51:55.76 UTC Workflow1URL00FullyDummyOutputInteractiondestination0net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity destination 0 text/plain java.lang.String false http://www.mygrid.org.uk/taverna/internal/biovel/open_url.html LocallyPresentedHtml true net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity DummyOutput net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInteractiondestinationURLFullyDummyOutputString_constantvalue 55542b17-acee-4db7-91d0-f98393aa66f3 2012-05-04 22:48:22.640 UTC 8ba75a8c-c9e1-4939-a604-f832383af079 2012-05-04 20:12:33.214 UTC c10b71f9-b7bf-4eb7-bf51-b08d68abeb15 2012-05-10 07:45:40.839 UTC 11f188b9-1ba3-478c-a8af-73369e0b7750 2012-05-04 20:21:24.403 UTC e67a37fd-4c95-4b40-a88e-c4c1903f2f80 2012-05-04 20:12:04.919 UTC Phylogenetic_inferenJobID00NexusFileName00URL_Output_file The output of the consensus service is a path were to obtain a zipped folder that includes all output from phylogenetic inference and the one of the consensus 2013-02-01 16:55:11.210 UTC GeoKS_Result Restul of the GeoKS test of convergence. 2013-02-01 16:21:52.128 UTC <result><success>True</success><burnin>16</burnin><pvalues>0.962205</pvalues></result> 2013-02-01 16:18:24.577 UTC convergence path to obtain the output file of program geoks 2013-02-01 16:51:20.3 UTC newickTree <res><tree>(ADD09384_1_555_ADD09384:1.18452,ABY27676_1_453_ABY27676:0.16674,(ACM89220_1_657_ACM89220:0.16271,(ADJ82639_1_645_ADJ82639:0.15654,(ADW58631_1_657_ADW58631:0.00298,ADW58691_1_657_ADW58691:0.00584)1.00:0.07383)0.98:0.04988,(ADW61587_1_657_ADW61587:0.10163,(ADH12119_1_645_ADH12119:0.14993,ADQ21240_1_648_ADQ21240:0.15645)0.90:0.06174)0.89:0.07555,(AEC60810_1_657_AEC60810:0.13396,((AEE92862_1_657_AEE92862:0.00180,AEE92882_1_657_AEE92882:0.00294)0.93:0.01820,(AEE92860_1_648_AEE92860:0.00172,AEE92867_1_642_AEE92867:0.00260,AEE92861_1_633_AEE92861:0.00326)0.85:0.01568)1.00:0.18625)0.99:0.14972)0.63:0.13345);</tree></res> 2013-02-01 16:53:50.585 UTC small xml with tag res with one or more tag tree each one with a body that contain a tree in netwick format. each tree represent the consensus for a given partition of group of partition in the same order that are cited in the nexus input file of mrbayes 2013-02-01 16:53:25.629 UTC xmlTest <res> <L description="Ibrahim statistics">423.122037352</L> <Ls description="Ibrahim statistics">428.606079329</Ls> <P description="Bolback statistics">1.0</P> <meanE description="Mean Expected Value of MaxLikelihood">-2627.87756007</meanE > <Mobs description="Observed MaxLikelihood">-3045.44353779</Mobs> <varSim description="Variance of Expected MaxLikelihood">4670.91274471</varSim> <ExpDist description="Distribution of ExpectedValue">-2589.20637194,-2639.19315086,-2648.73145729,-2610.52687863,-2585.58189766,-2659.38736705,-2574.18508073,-2723.33127804,-2704.75327374,-2631.32558631,-2552.5101582,-2703.39380494,-2667.13202763,-2651.50061539,-2569.28198383,-2626.62095931,-2617.76281875,-2572.57059545,-2709.19885221,-2688.46426288,-2637.69736502,-2670.66419513,-2696.07449828,-2655.07124413,-2647.79827494,-2604.91472976,-2534.24408297,-2583.34924816,-2668.87938323,-2740.57305901,-2530.11916167,-2562.9442791,-2685.41059003,-2633.56902122,-2578.83564307,-2658.37912818,-2677.44851934,-2652.06899557,-2663.63424658,-2469.63098045,-2596.01725813,-2576.9875296,-2591.27350833,-2527.44870379,-2715.68701201,-2579.27957802,-2697.29097232,-2653.00610636,-2523.66960289,-2655.8841772,-2738.57859993,-2705.53182443,-2684.40099097,-2753.99486914,-2642.32534055,-2615.3927742,-2631.21113197,-2742.02571906,-2634.42641856,-2531.52928978,-2584.85740825,-2698.68226298,-2531.43531149,-2746.77385677,-2701.02474243,-2582.30350573,-2700.11149286,-2420.65243487,-2607.17713434,-2661.51426589,-2650.16168222,-2647.65155726,-2588.47948607,-2630.75469861,-2497.64331913,-2530.25525188,-2615.65091658,-2727.78832928,-2698.71995068,-2594.46551089,-2686.27551492,-2572.56237886,-2689.25088172,-2573.35445443,-2713.22086611,-2583.46460149,-2628.94579908,-2435.58149796,-2651.07259891,-2627.98995835,-2654.27986508,-2575.08681898,-2605.36422889,-2612.01841594,-2776.62534019,-2630.16209443,-2532.75232406,-2478.6691404,-2629.15296535,-2557.65795904,-2606.9330103,-2676.16136514,-2637.71752968,-2574.30204479,-2647.04416783,-2677.9611039,-2589.79676102,-2629.41620838,-2697.8045608</ExpDist> </res> 2013-02-01 16:17:58.58 UTC Result of the Posterior Predictive test. the XML gives the details of the bolback test and the different component of the ibrahim statistics 2013-02-01 16:17:02.64 UTC Plot Result of the Posterior Predictive test. Histogram of the distribution of the complexities (log of sum of sites entropy or maximal possible loglikelihood score) of the simulated data using the posterior distribution parameters compared with observed data complexity. The 1-alpha high posterior density of the distribution show the region where simulate data complexity match the observed one. Larger observed complexity indicates model too simplistic, while the contrary indicates overparametrization of the model. 2013-02-01 16:14:07.751 UTC Call_Retrieve_MrBayesJobjobID0Output_Path00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCall_Retrieve_GeoKS_JobArgument0Name0Output_Path11GeoKS_Result22net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_three_stringsPath0Mode0Alpha0output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity Mode 0 'text/plain' java.lang.String true Alpha 0 'text/plain' java.lang.String true Path 0 text/plain java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2012-06-08 08:39:34.818 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAsk_ConvergenceModevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity convergence net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAsk_GeoKS_Servicevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity geoks_xml net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeShowWebPageURL0net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expression_erase_laststring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2012-05-07 06:30:23.453 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_constant_2_2_2value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity / net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDownloadMRBayesOutputURL0net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFileAddress_Spacervalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity / net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expression_erase_last_2regex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex UserNameHere 2012-05-07 06:30:23.453 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1seperator0concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_2stringlist1seperator0concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeask_AlphaXGeoKSmessage0answer00net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 ask VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAsk_Alphavalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Choose the minimal probability value that the observed MCMC integration has converged (e.g. 0.1, 0.95) net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCall_Retrieve_ConsensusTreeArgument0NewickTrees22Output_Path11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow31NewickString0net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeParsing_GeoKSGeoKS_XML0Burnin11Success11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsBurnin0PartArgument00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity Burnin 0 'text/plain' java.lang.String true PartArgument 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2012-10-01 11:30:53.18 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_strings_2string20string10output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <res><tree>a</tree><tree>b</tree></res> res/tree net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePosterioPredictiveTestName0Argument0XML_Report22net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMrBayesPPtestvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity MrBayesPPtest net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_Four_stringspathInputMrBayes0burninvalue0numberSample0nameRun0output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity nameRun 0 'text/plain' java.lang.String true pathInputMrBayes 0 'text/plain' java.lang.String true numberSample 0 text/plain java.lang.String true burninvalue 0 text/plain java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2012-11-22 15:44:01.483 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokecondition_checkercondition0pass_flags11fail_flags11 This service checks if the condition is "true" and if so outputs a value in the pass_flags list and leaves the fail_flags empty. If the condition is not true then the service outputs a value in the fail_flags list and leaves the pass_flags empty. 2011-11-15 09:59:22.100 UTC net.sf.taverna.t2.activitiesbeanshell-activity1.4net.sf.taverna.t2.activities.beanshell.BeanshellActivity condition 0 text/plain java.lang.String true pass_flags 1 1 fail_flags 1 1 workflow net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow20Sentinel0net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow20_2Sentinel0net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMakeHistogramXML0Alpha0plot22net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeask_PPTSizemessage0answer00net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 ask VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Sample Size from the Posterior Distribution to test fit of model on Data net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeText_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity 0.05 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCall_Retrieve_MrBayesJobjobIDJobIDCall_Retrieve_GeoKS_JobArgumentConcatenate_three_stringsoutputCall_Retrieve_GeoKS_JobNameAsk_GeoKS_ServicevalueConcatenate_three_stringsPathCall_Retrieve_MrBayesJobOutput_PathConcatenate_three_stringsModeAsk_ConvergenceModevalueConcatenate_three_stringsAlphaask_AlphaXGeoKSanswerShowWebPageURLMerge_String_List_to_a_StringconcatenatedSplit_string_into_string_list_by_regular_expression_erase_laststringCall_Retrieve_MrBayesJobOutput_PathSplit_string_into_string_list_by_regular_expression_erase_lastregexString_constant_2_2_2valueDownloadMRBayesOutputURLMerge_String_List_to_a_String_2concatenatedSplit_string_into_string_list_by_regular_expression_erase_last_2regexFileAddress_SpacervalueSplit_string_into_string_list_by_regular_expression_erase_last_2stringCall_Retrieve_GeoKS_JobOutput_PathMerge_String_List_to_a_StringstringlistSplit_string_into_string_list_by_regular_expression_erase_lastsplitMerge_String_List_to_a_StringseperatorString_constant_2_2_2valueMerge_String_List_to_a_String_2stringlistSplit_string_into_string_list_by_regular_expression_erase_last_2splitMerge_String_List_to_a_String_2seperatorFileAddress_Spacervalueask_AlphaXGeoKSmessageAsk_AlphavalueCall_Retrieve_ConsensusTreeArgumentConcatenate_two_strings_2outputWorkflow31NewickStringXPath_ServicenodelistParsing_GeoKSGeoKS_XMLCall_Retrieve_GeoKS_JobGeoKS_ResultConcatenate_two_stringsBurninParsing_GeoKSBurninConcatenate_two_strings_2string2Concatenate_two_stringsPartArgumentConcatenate_two_strings_2string1Call_Retrieve_MrBayesJobOutput_PathXPath_Servicexml_textCall_Retrieve_ConsensusTreeNewickTreesPosterioPredictiveTestNameMrBayesPPtestvaluePosterioPredictiveTestArgumentConcatenate_Four_stringsoutputConcatenate_Four_stringspathInputMrBayesCall_Retrieve_MrBayesJobOutput_PathConcatenate_Four_stringsburninvalueParsing_GeoKSBurninConcatenate_Four_stringsnumberSampleask_PPTSizeanswerConcatenate_Four_stringsnameRunNexusFileNamecondition_checkerconditionParsing_GeoKSSuccessWorkflow20Sentinelcondition_checkerpass_flagsWorkflow20_2Sentinelcondition_checkerfail_flagsMakeHistogramXMLPosterioPredictiveTestXML_ReportMakeHistogramAlphaText_constantvalueask_PPTSizemessagemessage_valuevalueURL_Output_fileCall_Retrieve_ConsensusTreeOutput_PathGeoKS_ResultCall_Retrieve_GeoKS_JobGeoKS_ResultconvergenceCall_Retrieve_GeoKS_JobOutput_PathnewickTreeCall_Retrieve_ConsensusTreeNewickTreesxmlTestPosterioPredictiveTestXML_ReportPlotMakeHistogramplot f2eec3d8-e7d3-475f-8785-fdadab1e2b99 2013-01-17 14:55:21.80 UTC 6eaa8577-af0a-40ba-abd4-96882b560b33 2012-09-27 13:06:49.941 UTC f2cf9ee0-2879-475b-a39d-8c991511ded9 2012-05-05 05:36:14.476 UTC e397ca8c-9f58-4259-911b-f04e492e6449 2012-05-07 06:34:39.162 UTC db82ef12-c7de-4ce1-b0b0-1a85d432884c 2013-01-31 12:42:53.95 UTC 62811f0c-70f7-4a4a-bc63-ff6c45c445ba 2012-05-06 19:42:35.26 UTC 4c876aa9-7a31-45e1-87bd-bd7d53d8ec43 2012-10-01 10:12:35.502 UTC 1a490476-5a3e-423c-b8ec-02b6e3c6cee7 2013-02-19 10:01:13.928 UTC 8991979f-867a-45d7-af9a-2b0e95e4b25c 2013-02-20 10:40:27.977 UTC Phylogenetic inference with MrBayes and NoGUI, test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test) 2013-02-05 16:19:21.451 UTC 92d8638e-e7d8-4de7-895c-a15bbf047874 2012-10-01 11:27:41.460 UTC 30d176de-d29b-466d-b9a5-6d28a4a2bc3c 2012-10-01 09:16:33.864 UTC c5d850c1-e111-42d2-ab76-bfd0af11f040 2012-06-08 08:32:43.388 UTC aba185c1-c311-4ef9-a92d-b9a8ddd5304f 2012-05-10 07:45:12.499 UTC 0de23bd7-a836-43aa-9d09-db059b20b545 2012-12-17 20:52:48.670 UTC 2e88e37f-3a55-4402-9e24-a31bbefbace3 2012-05-06 20:01:48.485 UTC e0a2fd90-6178-4d3c-abd0-f1badc8860bc 2013-02-18 17:11:09.734 UTC 145158db-9889-47be-ad17-e0907c558310 2012-05-10 07:30:02.691 UTC 3a7e3210-62e4-4659-8cbc-cfe56e79b733 2012-11-30 12:47:45.295 UTC 1d74772a-ac74-4da8-bf09-2513241893b6 2013-02-01 15:01:52.115 UTC 6e0a2723-70bf-4a15-b6c5-7600193dca5a 2012-09-21 10:41:50.255 UTC cb4c52fb-4491-490e-8935-2872e2a25c09 2012-12-17 20:53:14.82 UTC 12c1f28a-bea1-427d-b311-6718aa813bc8 2012-05-07 05:01:08.484 UTC 2a525328-2870-4779-9c2a-a220733ad02f 2012-05-07 11:24:21.300 UTC 84ce3b14-97fe-4304-bceb-9b4cd957c932 2012-05-07 09:21:22.516 UTC 595d22d9-a6b3-4e5a-9b46-50367a689d7e 2012-05-24 16:26:56.417 UTC 1546a518-e55d-430a-a352-4ed36668950e 2013-02-01 16:55:16.742 UTC 3534f209-570c-452a-8193-b5ffc9cabc72 2012-09-21 10:44:29.55 UTC fac047c9-1154-447b-b17d-e2de45211e1b 2013-02-19 15:43:09.787 UTC 28dda23e-c7dc-4d44-ac20-86cff432f946 2012-05-07 11:33:56.157 UTC 501cffd4-34cb-4075-b2b1-39b06ac74d3d 2013-02-05 15:51:18.684 UTC a27cfd7f-7b45-43b4-8ccb-130cf0d9733a 2012-09-27 12:49:24.32 UTC 1d45895c-3cd1-42bf-8006-2e72588110a0 2013-01-31 10:58:38.682 UTC c54ccc24-c297-47a6-91b2-759592b9553e 2012-09-21 10:50:08.42 UTC 37ec3cd4-9442-4c9a-aaa7-b42fab661cbf 2012-09-27 13:23:19.565 UTC 7e529d1f-daa7-48b0-a1fd-465d9c2d3792 2012-05-05 05:59:23.297 UTC bce05b28-e93a-478a-8e11-5b7421c236da 2012-09-27 13:56:16.135 UTC 2cd3a593-21b6-4910-b425-9ecdb88279ec 2012-05-04 20:55:37.723 UTC 22f0a2d4-62a1-4d69-82a9-89004438c407 2012-05-04 20:19:24.424 UTC 40699599-a001-42c0-8759-88aa266a0271 2012-09-27 14:47:53.418 UTC 6b5b4660-45a4-4484-a012-1f591d68225e 2012-05-05 05:39:14.842 UTC 48e8950c-3739-4f2f-b32a-1e49cf0e9649 2013-02-18 17:03:06.336 UTC 614842a1-6ddb-4c35-9d9f-969e5da7619f 2012-09-27 13:48:47.807 UTC f6dfc090-2f2c-477b-807e-77451e50a763 2012-10-01 14:43:17.747 UTC 48a6027e-a36c-4e40-a39e-9e06ae14ba89 2013-02-18 15:19:38.341 UTC 47c9c213-e8fa-436c-a287-a83fc5208c6f 2013-01-18 14:36:21.222 UTC f9c891c3-c38d-4d19-bde5-17ede9b84cd4 2013-01-31 11:46:12.660 UTC 3c86a854-b6f4-4069-99ba-516f27e58df1 2013-02-20 12:57:07.450 UTC 02bff899-ebc9-4edd-bc6b-d8074a66f141 2012-09-27 14:49:05.721 UTC 92687a2d-c280-4e82-bfd8-0a36736b49ba 2012-05-04 20:15:14.403 UTC Phylogenetic inference with MrBayes and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test) 2013-02-01 15:01:51.770 UTC 158c7c7c-8ae6-425f-97a8-faec72212282 2013-02-19 13:58:51.337 UTC 314feaef-2962-4ca1-b9d7-d3a6910ea7ec 2012-12-17 20:52:03.795 UTC 1467395a-4390-4d0c-94f8-eec457c1c510 2012-11-28 17:28:27.85 UTC 01d42280-c0e3-49ef-879e-4cb375f539dc 2012-09-21 11:00:21.91 UTC 7b6d5741-adce-4f93-96d4-891441f374c3 2012-05-04 19:55:35.621 UTC 2d7c8239-d18b-4173-89e6-712d06c61f51 2013-02-05 16:19:23.941 UTC 236ea769-4950-4cbc-a49c-50fbaff3289a 2013-02-18 17:16:35.103 UTC 6ca01092-bc80-469f-a9ad-18e7d845208a 2013-02-19 10:18:45.174 UTC a6fda157-6f40-456f-bd19-3a80975cb13c 2013-02-19 17:12:21.318 UTC saverio vicario giacinto donvito bachir balech 2013-02-01 15:00:22.266 UTC 0acad263-fe61-45b7-abd6-66b493be4166 2012-06-04 11:40:43.39 UTC 98a761ed-d95c-4ceb-bbe0-33d869cb0cce 2012-10-01 14:41:20.67 UTC 72355fee-027c-40cf-83dc-4688c049f480 2012-05-10 07:45:43.653 UTC 4e9ed3ca-87ce-4c1b-9f45-0d4235a79d5a 2012-09-21 14:38:51.392 UTC 5f9c3a31-a651-4cc2-a544-78f5783f9908 2012-05-06 19:49:52.928 UTC c151347b-b345-4d9e-a8d5-54635ee41954 2013-02-19 15:32:23.552 UTC eb49e2e4-d6f0-4835-82c7-df97d2711da8 2013-03-25 14:41:31.500 UTC 50c020ff-f443-422a-abf5-e25d8b6b7ba5 2012-09-21 10:25:37.359 UTC c2a6371c-aa82-4720-8901-ca21e64700a7 2012-10-01 11:08:06.43 UTC 86a8ff0b-b6b2-4195-aa27-78434bd71ce6 2013-01-30 22:29:37.592 UTC fc073daa-c6c4-4310-9b95-53362d175916 2013-02-18 15:22:04.38 UTC 3149d816-5e8f-4c55-9019-1a16e770304a 2013-02-18 22:01:31.888 UTC 47880dd0-388d-40e0-b60f-97149a7133de 2013-02-01 17:19:45.120 UTC 595fa70e-f728-416d-b783-1b367a04fde7 2013-01-18 14:41:22.116 UTC 86a91296-5af0-4692-b7ba-d7d0365c7e97 2013-01-31 13:28:47.932 UTC cba860ff-9ebd-40de-8547-6c3145656910 2012-10-01 14:09:52.466 UTC cea94a2d-87c7-4e88-aeb8-4917cf0d5d79 2012-05-04 20:22:08.233 UTC 31c4582c-7fbc-436f-808e-219c29dd543f 2013-02-18 16:23:22.79 UTC 43a9b22d-0fca-4ca5-817b-821670a43d5d 2012-10-01 10:20:14.331 UTC 6b0bfd33-6495-4668-bf08-4e03f64658a3 2012-11-28 15:47:13.111 UTC d5085302-3ecf-437c-9919-d736050878ac 2012-10-01 14:38:06.182 UTC 147bdfaa-2d8e-4634-af3d-5287c5e1bc93 2013-02-18 21:54:07.300 UTC 6e1fadda-86ac-4819-9055-f2f9b4529cd8 2012-05-05 05:26:04.315 UTC 22e1cb1c-e82d-422a-a9f6-93cd3965662f 2012-09-27 13:27:39.302 UTC 224735cc-6188-45b8-aee3-5ca3e155d91e 2012-09-27 13:43:00.883 UTC be99edbc-d1f0-4577-9265-0adeb47aa560 2012-05-05 05:31:48.797 UTC 0b674834-7e1a-4cbb-b036-b060fa321d4c 2012-08-31 14:07:32.782 UTC 3986bca4-3f44-4855-927c-c5792ede5e50 2012-05-05 05:33:43.971 UTC 91c502ab-7dbd-4946-9a79-275c218698ea 2012-09-27 12:52:22.945 UTC d1e0cf97-9cb0-49e3-a551-a07517f38eae 2012-09-21 15:17:03.341 UTC 1221473d-5d8f-4bd1-ae73-73c16bbf8665 2012-10-01 11:34:27.628 UTC 13e17a4a-4643-4e7b-9927-9bd4c6c59aac 2012-05-04 17:41:18.866 UTC a4033e8d-b19c-4187-84b6-15ffbaf2d805 2012-10-01 13:50:02.205 UTC 832a8933-7d2e-4cf4-8757-1cc8c79170c9 2012-05-04 20:36:30.12 UTC 71d60b33-01b7-45f4-b35f-431a2275efb1 2013-02-18 15:53:36.279 UTC 725f4a9d-7d95-4352-ba92-0e9615df53d9 2012-11-22 15:52:00.494 UTC 853af834-c55a-4f72-be8f-1b03ff20bd8f 2012-06-08 09:36:57.264 UTC 2b42be78-e780-4257-9c67-d2a51b8c4827 2012-05-05 05:26:39.935 UTC ff51bb66-2602-481a-82b4-7676456316df 2012-05-04 19:50:27.88 UTC cb6364bb-1322-491f-94ae-29d7ccad4a47 2013-02-01 16:59:58.676 UTC cb4c52fb-4491-490e-8935-2872e2a25c09 2013-01-17 15:05:59.451 UTC 654e704d-1e41-4b72-9933-c2ae0cf51922 2012-06-08 08:39:44.818 UTC 148a5fd3-5119-422a-9787-7a0328c6b0f3 2012-09-21 15:04:35.216 UTC 1be2f39f-ee9d-428d-87f4-c553ac861b8b 2012-09-27 13:12:32.717 UTC 0d861536-4a1d-48e9-ad10-c0cac7399b8b 2012-09-27 12:50:04.836 UTC 3e0a9baa-6c9e-4835-ba1a-af88102c1c71 2013-02-19 15:39:23.154 UTC a578675c-5281-470b-a9c6-5cda2dc96e99 2013-01-30 22:51:08.196 UTC ae0d823a-0415-40ff-81c2-97b6fcaf6dc0 2012-09-27 14:27:42.360 UTC 2ed748c1-f20f-41b7-a426-1e1a3b52059c 2012-05-06 20:16:44.23 UTC ffe5fb3f-cad4-4f60-bd77-776a19a37a27 2012-09-27 13:24:34.726 UTC 4c571cdb-e311-423e-bf31-27496bb626a1 2012-09-21 14:59:52.390 UTC Phylogenetic_inferenMSA_fasta00 >ABY27676/1-453 ABY27676 ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------TTAATATTAGGA GCTCCAGATATAGCTTTTCCTCGAATAAATAATCTTAGTTTTTGGTTGCTTCCTCCTTCTTTGATTTTATTA ATAATTTCTTCAATAGTGGAGATAGGGGTTGGGGCGGGGTGAACTATTTATCCTCCTTTATCGGGTAGTCTA GGTCATTCAGGGGTTTCAGTAGATTTAGCTATTTTTAGCTTACATTTGGCGGGAGCTTCTTCAATTATAGGA GCAATTAATTTTATTTCCACTATTTTAAATATACGTTCAGTTGGGATATCTATAGATAAGGTACCTTTATTT GTGTGATCTGTATTAGTTACTGCTGTTTTATTATTATTATCTTTACCAGTTTTAGCCTGGGGTATTACGATA TTATTAACAGATCGAAATTTTAACACTTCTTTTTTTGACCCTGCGGGTGGAGGTGATCCAATTTTATTTCAA CATCTTTTT >ADW61587/1-657 ADW61587 ACGTTATATTTAATATTTGGGGCTTGAGCTGCTATAGTAGGAACAGCCATAAGAGTATTAATTCGAATTGAA TTAGGTCAACCTGGGAGGTTTATTGGGGATGATCAATTATATAATGTAATCGTTACTGCTCATGCATTTGTT ATAATTTTTTTTATAGTAATACCTATTTTGATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATATTAGGC GCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGCTACTCCCTCCTTCATTATTTTTATTA ATTATTTCTTCTATAGTAGAAATGGGAGTGGGGGCAGGATGGACGGTTTATCCTCCTTTAGCTAGTTTAGAG GGCCATGCTGGCAGGTCAGTGGATTTTGCTATTTTTTCTTTACATTTAGCGGGGGCCTCCTCTATTATGGGG GCTATTAATTTTATTTCTACTATTATTAATATACGATCGCATGGAATAACTATAGAAAAAGTACCTTTATTT GTATGATCAGTATTGATTACTGCTGTATTATTATTATTATCACTTCCAGTATTGGCGGGGGCTATCACAATA TTATTAACTGATCGAAATTTTAATACTTCGTTTTTTGACCCTTCAGGAGGGGGGGATCCAATCCTTTTCCAA CATTTATTT >AEE92862/1-657 AEE92862 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATGGTAACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATA TTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAG CATTTATTT >AEC60810/1-657 AEC60810 ACTTTGTATTTATTGTTTGGTATTTGATCTGCTATAATGGGAACGGCAATAAGAGTGATTATTCGAATTGAA TTAGGTCAAGTTGGAAGATTGTTGGGTGATGATCATTTATATAATGTAATTGTAACAGCACATGCTTTGGTT ATGATTTTTTTTATAGTTATACCGATTTTGATTGGTGGATTTGGAAATTGAATAGTTCCTTTGATGTTAGGT GCTCCAGATATAGCATTCCCACGTATAAATAATTTGAGATTTTGATTGCTTCCTCCATCATTATTTTTGTTA TTATTATCTTCTTTAACAGATGTAGGGGTTGGAGCCGGGTGAACTATTTATCCTCCTTTATCCTCTGGGGTT GGACATAGAGGGGGGGGGATGGATTTTGCTATTTTTTCTTTACATTTAGCAGGAGCTTCATCTATTATAGGG GCGATTAATTTTATTACAACAATTATTAATATGCGAAGATTTGGAATAACAATAGAACGTGTACCTTTATTT GTGTGATCAGTTCTTATTACTACTATTTTATTATTGCTTTCTTTACCTGTATTGGCTGGTGCTATTACTATA TTGTTGACTGATCGAAATTTCAATACTTCTTTTTTTGATCCTGCTGGAGGTGGTGATCCTATTTTGTTTCAA CATTTATTT >AEE92861/1-633 AEE92861 ------------------------TGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAATATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >AEE92860/1-648 AEE92860 ---------TTTGTTTTTGGAGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >ADD09384/1-555 ADD09384 ------------------------------------------------------------------------ ------------------------------TATCAGCTATACAATGTATTAATTACCGCTCATGCTATAATT ATGGTATTTTTCATGATTATGCCAGCTTTATTTGGTGGATTTGGTAATTACTTTGTACCAATTTTAATAGGT GCCCCGGATATGGCTTTTCCTAGGCTAAATAATATAAGTTTTTGGCTACTTGTCCCTGCTTTTATATTATTA ATGCTGTCAGGTTTGGTTGATGGAGGAGCTGGTACTGGCTGGACACTGTATCCTCCTCTAAGTAGTATAGTA GGGCATCCTGGCGCTGCTGTCGATATGGCTATTTTAAGCTTACATCTTACAGGGCTTTCCTCCATTCTTGGT TCAATTAATATGATTGTCACTATCTTTAATATGAGAACTGATGGTATGGGGTTATTTGAAATGCCCTTATTT GTTTGGTCAATTTTGGTTACTGCCTTCTTGCTGATACTAGCAATTCCTGTGTTAGGGGGTGCAATAACCATG TTACTGACTGATCGAAATTTTGGTACTACTTTTTTCAAGCCTGATGGTGGCGGAGATCCAGTGTTATTTCAG CATTTATTT >ADJ82639/1-645 ADJ82639 ACTTTATATTTAATGTTTGGGGTTTGGTCAGCTATAATAGGAACTGCTATAAGAGTATTAATTCGAATGGAA TTAGGGAATCCTGGTAGATTGTTAGGTGATGATCATTTGTATAATGTTATAGTTACTGCTCATGCTTTTGTA ATAATTTTTTTTATAGTAATGCCTATTCTTATTGGAGGTTTTGGAAATTGATTAGTTCCTTTAATATTAGGA GCTCCAGATATATCATTTCCTCGAATAAATAATCTTTCTTTTTGATTATTACCTCCTTCTTTATTTTTGTTA TCTATATCTTCTATAGTAGAAATAGGAGTTGGGGCTGGGTGAACTGTTTATCCTCCTTTAGCGTCTACAGTT GGGCACATAGGAAATTCAATAGATTTTGCTATTTTTTCTCTTCATTTAGCTGGAGCTTCTTCTATTATAGGA GCTGTAAATTTTATTTCTACCATTATTAATATACGAATATTAGGAATATCTATAGAGAAGGTTCCTCTTTTT GTTTGATCAGTTTTAATTACAGCAGTATTATTATTACTTTCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACAGATCGAAATTTTAATACTTCTTTTTTTGATCCTGCTGGGGGAGGAGATCCTAATTTATTT--- --------- >ADQ21240/1-648 ADQ21240 AGATTATATTTTGTTTTTGGGGCTTGAGCTGCTATAGTAGGAACAGCAATAAGAGTATTAATTCGTGTTGAG TTGGGACAAACTGGTAGTTTGTTAGGGGATGATCAGTTGTATAATGTTATTGTTACGGCTCATGCTTTTGTA ATAATTTTTTTTATAGTTATGCCTATTTTAATTGGGGGTTTTGGAAATTGGCTGATTCCACTAATACTAGGA GCTCCGGATATAGCTTTCCCTCGTATAAATAATTTGAGATTTTGGCTTTTACCCCCTTCTTTATTATTACTG TTTATTTCAAGCATAGATGAGATAGGAGTGGGGGCGGGATGAACGGTTTACCCCCCTCTTGCCTCTTTAGAG GGACATTCTGGTAGTTCAGTAGATTTTGCTATTTTTTCTTTACACTTAGCTGGAGCGTCTTCTATTATAGGG GCTATTAATTTTATTTCCACAATTTTGAATATACGGGGTTATGGAATATCTATAGAAAAAGTACCTTTATTT GTTTGGTCCGTGTTAATTACAGCTGTATTATTATTGTTATCTCTTCCTGTGTTAGCTGGGGCTATCACAATA TTACTGACGGATCGTAATTTTAATACTTCATTTTTTGATCCTTGTGGGGGGGGGGATCCTGTTTTGTTTCAA --------- >AEE92882/1-657 AEE92882 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATTGTAACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATA TTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAG CATTTATTT >ADW58691/1-657 ADW58691 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAA TTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTT ATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGT GCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTATTACCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATAGTTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTA GGTCATATGGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGA GCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTT GTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAA CATTTATTT >ADW58631/1-657 ADW58631 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAA TTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTT ATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGT GCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTACTACCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATAGCTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTA GGTCATATAGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGA GCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTT GTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAA CATTTATTT >ACM89220/1-657 ACM89220 ACTTTATATTTTTTATTTGGTACTTGATCAGCAATAATTGGTACAGCAATAAGTGTTTTAATTCGTGTTGAA CTAGGATTTTCTGGAAGATTTTTAGGTGATGATCATTTATATAATGTAATTGTTACTGCTCATGCTTTTATT ATAATTTTTTTTATAGTTATACCTATTTTAATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAAGA GCTCCAGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGTTACTACCTCCTTCGTTATTATTGTTA TTTATTTCTTCTATGGTTGAAATCGGAGTTGGAGCAGGGTGGACTATTTATCCTCCTTTATCTTCTTCTGTG GGTCATTCTGGTGCATCTATGGATTTTGCAATTTTTTCTCTTCATTTAGCTGGTGCTTCTTCTATTATAGGT GCTATTAATTTTATTTCAACAATTATTAATATACGACCTTATGGTATAAGAATAGAAAAGATTCCTTTATTT GTATGATCTGTATTAATTACAGCTGTCTTATTATTATTATCATTACCAGTATTAGCTGGGGCTATTACTATA CTTTTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCAGCTGGGGGTGGGGATCCAATTTTATTTCAG CATTTATTT >AEE92867/1-642 AEE92867 ---------------TTTGGGGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >ADH12119/1-645 ADH12119 ACTTTATACTTGGTTTTTGGTGCTTGAGCGGCTATGGTTGGAACTGCAATAAGTGTTTTAATTCGAATTGAG TTGGGGCAATCTGGTAGATTTATGGGAGATGATCAGTTGTATAATGTTATTGTAACTGCTCATGCTTTTGTT ATAATTTTTTTTATGGTTATGCCTATTTTGATTGGGGGCTTTGGTAATTGACTGGTTCCTTTGATGTTGGGG GCTCCTGATATGGCTTTTCCTCGCATGAATAATTTAAGGTTTTGATTATTGCCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATGGTGGAAATAGGGGTTGGGGCTGGTTGAACGATCTACCCTCCTTTAGCGTCTCTAGAA GGACATTCAGGAAGTTCGGTTGATTTTGCCATTTTTTCTTTGCATTTGGCTGGGGCCTCTTCTATTATAGGG GCTATTAATTTTATTTCTACAATTTTGAATATACGGTCTTATGGGATGTCTATGGAAAAAGTTCCTTTGTTT GTTTGGTCGGTTTTAATTACTGCTGTTTTGCTCCTATTATCACTTCCGGTTTTAGCTGGGGCTATCACTATG TTATTAACTGATCGAAATTTTAATACATCGTTTTTTGATCCTTCGGGGGGAGGGGATCCTATTTTTTTT--- --------- 2013-02-18 15:21:07.688 UTC Multiple Sequence Alignment in Fasta format 2013-02-18 15:21:26.152 UTC PossiblePartition00 Gene1_pos1 = 1-657\3; Gene1_pos2 = 2-657\3; Gene1_pos3 = 3-657\3; 2013-02-18 15:21:41.66 UTC Partitioning of the MSA using nexus/raxml syntax 2013-02-18 15:21:59.255 UTC JobIDNexusFileNameUploadFile_Nexus4MrBayesFile_name0InputBody0REST_Service_redirection00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAskMrBayesServicevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity MrBayes_16CPUs net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCall_MrBayesJobName0Argument0JobID11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAsk_FileNamevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Choose a File Name net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeask_FileNamemessage0answer00net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 ask VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSelecting_EvolutionaPossiblePartition0MSA_fasta0MrBayesInput55net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUploadFile_Nexus4MrBayesFile_nameask_FileNameanswerUploadFile_Nexus4MrBayesInputBodySelecting_EvolutionaMrBayesInputCall_MrBayesJobNameAskMrBayesServicevalueCall_MrBayesJobArgumentUploadFile_Nexus4MrBayesREST_Service_redirectionask_FileNamemessageAsk_FileNamevalueSelecting_EvolutionaPossiblePartitionPossiblePartitionSelecting_EvolutionaMSA_fastaMSA_fastaJobIDCall_MrBayesJobJobIDNexusFileNameask_FileNameanswer ae0d823a-0415-40ff-81c2-97b6fcaf6dc0 2012-09-27 14:27:42.360 UTC d1e0cf97-9cb0-49e3-a551-a07517f38eae 2012-09-21 15:17:03.341 UTC fc073daa-c6c4-4310-9b95-53362d175916 2013-02-18 15:22:04.38 UTC 614842a1-6ddb-4c35-9d9f-969e5da7619f 2012-09-27 13:48:47.807 UTC 1be2f39f-ee9d-428d-87f4-c553ac861b8b 2012-09-27 13:12:32.717 UTC 147bdfaa-2d8e-4634-af3d-5287c5e1bc93 2013-02-18 21:54:07.300 UTC 50c020ff-f443-422a-abf5-e25d8b6b7ba5 2012-09-21 10:25:37.359 UTC 2e88e37f-3a55-4402-9e24-a31bbefbace3 2012-05-06 20:01:48.485 UTC 86a8ff0b-b6b2-4195-aa27-78434bd71ce6 2013-01-30 22:29:37.592 UTC 6eaa8577-af0a-40ba-abd4-96882b560b33 2012-09-27 13:06:49.941 UTC 0de23bd7-a836-43aa-9d09-db059b20b545 2012-12-17 20:52:48.670 UTC 3149d816-5e8f-4c55-9019-1a16e770304a 2013-02-18 22:01:31.888 UTC db82ef12-c7de-4ce1-b0b0-1a85d432884c 2013-01-31 12:42:53.95 UTC f6dfc090-2f2c-477b-807e-77451e50a763 2012-10-01 14:43:17.747 UTC cb4c52fb-4491-490e-8935-2872e2a25c09 2013-01-17 15:05:59.451 UTC d5085302-3ecf-437c-9919-d736050878ac 2012-10-01 14:38:06.182 UTC 62811f0c-70f7-4a4a-bc63-ff6c45c445ba 2012-05-06 19:42:35.26 UTC cea94a2d-87c7-4e88-aeb8-4917cf0d5d79 2012-05-04 20:22:08.233 UTC 43a9b22d-0fca-4ca5-817b-821670a43d5d 2012-10-01 10:20:14.331 UTC 725f4a9d-7d95-4352-ba92-0e9615df53d9 2012-11-22 15:52:00.494 UTC e0a2fd90-6178-4d3c-abd0-f1badc8860bc 2013-02-18 17:11:09.734 UTC 1d74772a-ac74-4da8-bf09-2513241893b6 2013-02-01 15:01:52.115 UTC ffe5fb3f-cad4-4f60-bd77-776a19a37a27 2012-09-27 13:24:34.726 UTC 28dda23e-c7dc-4d44-ac20-86cff432f946 2012-05-07 11:33:56.157 UTC 37ec3cd4-9442-4c9a-aaa7-b42fab661cbf 2012-09-27 13:23:19.565 UTC 4c571cdb-e311-423e-bf31-27496bb626a1 2012-09-21 14:59:52.390 UTC 30d176de-d29b-466d-b9a5-6d28a4a2bc3c 2012-10-01 09:16:33.864 UTC ff51bb66-2602-481a-82b4-7676456316df 2012-05-04 19:50:27.88 UTC 2b42be78-e780-4257-9c67-d2a51b8c4827 2012-05-05 05:26:39.935 UTC 3e5be10b-fbfc-40df-9fc6-5915993a6571 2013-02-19 07:44:36.728 UTC cb4c52fb-4491-490e-8935-2872e2a25c09 2012-12-17 20:53:14.82 UTC 84ce3b14-97fe-4304-bceb-9b4cd957c932 2012-05-07 09:21:22.516 UTC 6b5b4660-45a4-4484-a012-1f591d68225e 2012-05-05 05:39:14.842 UTC f2eec3d8-e7d3-475f-8785-fdadab1e2b99 2013-01-17 14:55:21.80 UTC 0aced691-cc6a-4fca-b002-808e4c0c217c 2013-02-19 17:06:18.901 UTC 6e1fadda-86ac-4819-9055-f2f9b4529cd8 2012-05-05 05:26:04.315 UTC 01d42280-c0e3-49ef-879e-4cb375f539dc 2012-09-21 11:00:21.91 UTC 4e9ed3ca-87ce-4c1b-9f45-0d4235a79d5a 2012-09-21 14:38:51.392 UTC 236ea769-4950-4cbc-a49c-50fbaff3289a 2013-02-18 17:16:35.103 UTC 595d22d9-a6b3-4e5a-9b46-50367a689d7e 2012-05-24 16:26:56.417 UTC 224735cc-6188-45b8-aee3-5ca3e155d91e 2012-09-27 13:43:00.883 UTC 98a761ed-d95c-4ceb-bbe0-33d869cb0cce 2012-10-01 14:41:20.67 UTC 7b6d5741-adce-4f93-96d4-891441f374c3 2012-05-04 19:55:35.621 UTC a27cfd7f-7b45-43b4-8ccb-130cf0d9733a 2012-09-27 12:49:24.32 UTC 31c4582c-7fbc-436f-808e-219c29dd543f 2013-02-18 16:23:22.79 UTC 47c9c213-e8fa-436c-a287-a83fc5208c6f 2013-01-18 14:36:21.222 UTC 0b674834-7e1a-4cbb-b036-b060fa321d4c 2012-08-31 14:07:32.782 UTC 145158db-9889-47be-ad17-e0907c558310 2012-05-10 07:30:02.691 UTC 3a7e3210-62e4-4659-8cbc-cfe56e79b733 2012-11-30 12:47:45.295 UTC a4033e8d-b19c-4187-84b6-15ffbaf2d805 2012-10-01 13:50:02.205 UTC 92687a2d-c280-4e82-bfd8-0a36736b49ba 2012-05-04 20:15:14.403 UTC 3986bca4-3f44-4855-927c-c5792ede5e50 2012-05-05 05:33:43.971 UTC 0d861536-4a1d-48e9-ad10-c0cac7399b8b 2012-09-27 12:50:04.836 UTC 22f0a2d4-62a1-4d69-82a9-89004438c407 2012-05-04 20:19:24.424 UTC c54ccc24-c297-47a6-91b2-759592b9553e 2012-09-21 10:50:08.42 UTC 314feaef-2962-4ca1-b9d7-d3a6910ea7ec 2012-12-17 20:52:03.795 UTC f9c891c3-c38d-4d19-bde5-17ede9b84cd4 2013-01-31 11:46:12.660 UTC 2a525328-2870-4779-9c2a-a220733ad02f 2012-05-07 11:24:21.300 UTC 48a6027e-a36c-4e40-a39e-9e06ae14ba89 2013-02-18 15:19:38.341 UTC 148a5fd3-5119-422a-9787-7a0328c6b0f3 2012-09-21 15:04:35.216 UTC a578675c-5281-470b-a9c6-5cda2dc96e99 2013-01-30 22:51:08.196 UTC 1221473d-5d8f-4bd1-ae73-73c16bbf8665 2012-10-01 11:34:27.628 UTC 91c502ab-7dbd-4946-9a79-275c218698ea 2012-09-27 12:52:22.945 UTC 72355fee-027c-40cf-83dc-4688c049f480 2012-05-10 07:45:43.653 UTC bce05b28-e93a-478a-8e11-5b7421c236da 2012-09-27 13:56:16.135 UTC 71d60b33-01b7-45f4-b35f-431a2275efb1 2013-02-18 15:53:36.279 UTC c95dc9e3-b14f-4055-b5ef-2a351d82e5e0 2013-02-19 07:41:05.564 UTC 2ed748c1-f20f-41b7-a426-1e1a3b52059c 2012-05-06 20:16:44.23 UTC cba860ff-9ebd-40de-8547-6c3145656910 2012-10-01 14:09:52.466 UTC 4c876aa9-7a31-45e1-87bd-bd7d53d8ec43 2012-10-01 10:12:35.502 UTC 48e8950c-3739-4f2f-b32a-1e49cf0e9649 2013-02-18 17:03:06.336 UTC 1467395a-4390-4d0c-94f8-eec457c1c510 2012-11-28 17:28:27.85 UTC Phylogenetic inference with MrBayes and NoGUI, test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test) 2013-02-05 16:19:21.451 UTC f2cf9ee0-2879-475b-a39d-8c991511ded9 2012-05-05 05:36:14.476 UTC 3534f209-570c-452a-8193-b5ffc9cabc72 2012-09-21 10:44:29.55 UTC 5f9c3a31-a651-4cc2-a544-78f5783f9908 2012-05-06 19:49:52.928 UTC 6b0bfd33-6495-4668-bf08-4e03f64658a3 2012-11-28 15:47:13.111 UTC 6e0a2723-70bf-4a15-b6c5-7600193dca5a 2012-09-21 10:41:50.255 UTC 0acad263-fe61-45b7-abd6-66b493be4166 2012-06-04 11:40:43.39 UTC 92d8638e-e7d8-4de7-895c-a15bbf047874 2012-10-01 11:27:41.460 UTC 86a91296-5af0-4692-b7ba-d7d0365c7e97 2013-01-31 13:28:47.932 UTC 2cd3a593-21b6-4910-b425-9ecdb88279ec 2012-05-04 20:55:37.723 UTC 654e704d-1e41-4b72-9933-c2ae0cf51922 2012-06-08 08:39:44.818 UTC 12c1f28a-bea1-427d-b311-6718aa813bc8 2012-05-07 05:01:08.484 UTC 595fa70e-f728-416d-b783-1b367a04fde7 2013-01-18 14:41:22.116 UTC 40699599-a001-42c0-8759-88aa266a0271 2012-09-27 14:47:53.418 UTC 47880dd0-388d-40e0-b60f-97149a7133de 2013-02-01 17:19:45.120 UTC Phylogenetic inference with MrBayes and test of MCMC convergence (GEOKS) and fit of the model on the data (Posterior Predictive test) 2013-02-01 15:01:51.770 UTC 7e529d1f-daa7-48b0-a1fd-465d9c2d3792 2012-05-05 05:59:23.297 UTC aba185c1-c311-4ef9-a92d-b9a8ddd5304f 2012-05-10 07:45:12.499 UTC 501cffd4-34cb-4075-b2b1-39b06ac74d3d 2013-02-05 15:51:18.684 UTC 1546a518-e55d-430a-a352-4ed36668950e 2013-02-01 16:55:16.742 UTC c5d850c1-e111-42d2-ab76-bfd0af11f040 2012-06-08 08:32:43.388 UTC 13e17a4a-4643-4e7b-9927-9bd4c6c59aac 2012-05-04 17:41:18.866 UTC cb6364bb-1322-491f-94ae-29d7ccad4a47 2013-02-01 16:59:58.676 UTC 832a8933-7d2e-4cf4-8757-1cc8c79170c9 2012-05-04 20:36:30.12 UTC 1d45895c-3cd1-42bf-8006-2e72588110a0 2013-01-31 10:58:38.682 UTC 61eef98a-91c3-4731-be55-c2f92eea8df3 2013-02-19 10:43:13.326 UTC 853af834-c55a-4f72-be8f-1b03ff20bd8f 2012-06-08 09:36:57.264 UTC 2d7c8239-d18b-4173-89e6-712d06c61f51 2013-02-05 16:19:23.941 UTC c2a6371c-aa82-4720-8901-ca21e64700a7 2012-10-01 11:08:06.43 UTC saverio vicario giacinto donvito bachir balech 2013-02-01 15:00:22.266 UTC e397ca8c-9f58-4259-911b-f04e492e6449 2012-05-07 06:34:39.162 UTC 22e1cb1c-e82d-422a-a9f6-93cd3965662f 2012-09-27 13:27:39.302 UTC 02bff899-ebc9-4edd-bc6b-d8074a66f141 2012-09-27 14:49:05.721 UTC be99edbc-d1f0-4577-9265-0adeb47aa560 2012-05-05 05:31:48.797 UTC Workflow23GeoKS_XML00 <result><success>True</success><burnin>10</burnin><pvalues>0.1,0.4</pvalues></result> 2012-10-01 09:07:29.124 UTC output of the GeoKS_XML service. 2012-10-01 09:05:34.319 UTC Success "True" 2012-10-01 08:35:31.640 UTC the result is "True" if convergence test is successfull and nothing if not 2012-10-01 08:35:23.824 UTC Failure the result is "True" if convergence test failed and nothing if it succed 2012-10-01 08:35:52.967 UTC "True" 2012-10-01 08:35:57.135 UTC Pvalues [0.1] 2012-10-01 08:32:16.235 UTC List of probabilities (number between 0 and 1) that each single tree included in the evolutionary model is inferred in the same way in the different runs of the MCMCMC phylogenetic inference. Generally evolutionary model include only one tree parameter, in this case the list is composed of only one element. In other case the order of the pvalues match the order the label tree in the MrBayes output 2012-10-01 08:33:07.346 UTC Burnin Is an integer that indicates how many of the initial samples from the MCMCMC calculation need to be discarded to approximate correctly the posterior distribution using the numerical sampling of the phylogenetic inference. 2012-10-01 08:37:34.736 UTC 100 2012-10-01 08:37:07.968 UTC XPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <result><success>True</success><burnin>10</burnin><pvalues>0.1,0.3</pvalues></result> result/success net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_2xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <result><success>True</success><burnin>10</burnin><pvalues>0.1,0.3</pvalues></result> result/failure net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_3xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <result><success>True</success><burnin>10</burnin><pvalues>0.1,0.3</pvalues></result> result/pvalues net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionregex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity , net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_4xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <result><success>True</success><burnin>10</burnin><pvalues>0.1,0.3</pvalues></result> result/burnin net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_textGeoKS_XMLXPath_Service_2xml_textGeoKS_XMLXPath_Service_3xml_textGeoKS_XMLSplit_string_into_string_list_by_regular_expressionregexregex_valuevalueSplit_string_into_string_list_by_regular_expressionstringXPath_Service_3nodelistXPath_Service_4xml_textGeoKS_XMLSuccessXPath_ServicenodelistFailureXPath_Service_2nodelistPvaluesSplit_string_into_string_list_by_regular_expressionsplitBurninXPath_Service_4nodelist 1ecb5fdb-8b84-4d1c-80e2-a0e83ba35b5f 2012-10-01 09:07:31.179 UTC e0893a0a-af4a-43c1-920c-0ccbd2c611c1 2012-10-01 09:05:35.455 UTC 56c444d6-8047-44b4-b051-b35e888ec946 2012-10-01 08:33:28.157 UTC 55328719-02ba-4412-ace3-9f89eb885312 2012-10-01 08:37:35.251 UTC Workflow58XML00Alpha00plotXPath_GetMobsxml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <res> <L description="Ibrahim statistics">560.17351799</L> <Ls description="Ibrahim statistics">562.48875169</Ls> <P description="Bolback statistics">1.0</P> <meanE description="Mean Expected Value of MaxLikelihood">-2487.59486231</meanE> <Mobs description="Observed MaxLikelihood">-3045.44353779</Mobs> <varSim description="Variance of Expected MaxLikelihood">2599.22552032</varSim> <ExpDist description="Distribution of 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</res> /res/ExpDist net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_GetMobsxml_textXMLRshell_MakeHistogramMobsXPath_GetMobsnodelistRshell_MakeHistogramExpDistXPath_getExpDistnodelistRshell_MakeHistogramAlphaAlphaXPath_getExpDistxml_textXMLplotRshell_MakeHistogrammyplot 6965f9c8-e172-4682-b286-9786cecaed79 2013-01-31 12:16:35.220 UTC bc58c136-fefc-4be3-a6f1-35984845bc64 2013-01-18 14:14:18.893 UTC d98d7559-7d3c-407c-ba6e-8c234e399229 2013-01-18 13:30:29.16 UTC 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3b6799f4-700c-444f-b53c-30dfd8717e5c 2013-01-31 12:21:21.111 UTC 93f8056c-42f1-4a59-946f-a2f8d3914baf 2013-01-31 13:28:27.618 UTC bbaa94d2-2191-46c8-9baf-ed2b422ba9df 2013-01-18 11:45:05.828 UTC 86296fa5-ceb5-4884-a657-bb4fbf6f7c39 2013-01-31 12:20:38.421 UTC 3efe3c8e-5902-4e6f-b432-c3f9cbe9faf5 2013-01-30 22:50:49.812 UTC 82058ebc-ca68-43ab-851c-977c1e028d14 2013-01-18 13:11:08.87 UTC 898c126e-107b-468d-a69e-53f57a9c0d06 2013-01-18 14:19:50.940 UTC 8676cbb9-0719-4914-8f39-28270215165d 2013-01-18 14:17:35.129 UTC 053d63f4-a475-4f83-8059-381d0c48223c 2013-01-18 13:45:52.704 UTC c3b130f6-35a6-40d1-a359-ae49b1a512dd 2013-01-18 11:47:38.828 UTC 1ba0dcd1-73fc-4891-b705-eaffd4de05f9 2013-01-18 14:32:21.787 UTC 274d23ca-206c-4823-bd4c-36e79194a36f 2013-02-01 17:02:29.461 UTC a04d0f7d-6b72-4b7c-a724-0e40b0607840 2013-01-18 14:32:53.824 UTC cc700065-877b-4f6f-bc60-2afefb4e4c72 2013-01-18 13:48:33.571 UTC d6f3e11c-081d-4ecc-b65f-1f105cda6ec2 2013-01-18 13:12:23.690 UTC 03fcf575-2673-414d-81c7-2cafc1d681ba 2013-01-18 14:21:04.943 UTC 1e79fbaf-f64e-4888-9898-50350c3632f2 2013-01-18 13:15:14.331 UTC 36a6c89d-26a3-4420-84f1-6548b5a893a4 2013-01-31 11:45:36.60 UTC e45ab87e-4aef-4e27-9cb2-6996bca88811 2013-01-18 14:23:04.208 UTC 47c4c3c8-896c-430d-bb00-899d253b2308 2013-01-31 12:11:22.252 UTC 1fc290a8-d5be-494b-bc2a-c08b0c1705a2 2013-01-31 12:23:39.281 UTC 7a7bbd57-bf34-4b66-bd97-d085a37dce6b 2013-01-18 13:43:32.415 UTC d27fc20f-9957-4ba8-b7ea-999ac99fda50 2013-01-18 13:46:37.300 UTC 8db48588-d89c-4179-b9ac-fb49ce80365d 2013-01-18 14:23:37.595 UTC 46bfa32d-0929-4c54-a300-1fd999241ff6 2013-01-18 13:14:34.866 UTC 49a8f51f-e2de-4573-af93-53c01eaeb530 2013-01-31 12:23:03.876 UTC a7ad767e-2ffe-4c35-a331-46c4493b9568 2013-01-31 12:05:56.745 UTC dc364ced-28d9-4d3c-be4f-257fca5c3639 2013-01-18 14:05:03.590 UTC 7b6294fa-4c8c-4d11-9798-dbb327c37c12 2013-01-18 13:13:16.820 UTC 1da06956-3e64-47aa-a538-7ba80170460c 2013-01-18 13:12:08.988 UTC Workflow20Sentinel00DummyOutText_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Ciao net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketellmessage0net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 tell VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Convergence of MCMC reached! net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketellmessagemessage_valuevalueDummyOutText_constantvalue 6be543cf-0a7e-4305-b7fc-1efaee8b413c 2012-11-28 17:08:36.500 UTC 844a0428-c2a3-43f5-8f4f-d6609f20cc40 2013-01-31 10:56:51.471 UTC ac938b2a-fe53-450b-8315-fd10b043ea40 2012-11-28 17:07:09.459 UTC Workflow36JobID00StatusOutputStandardOutputREST_Service_2JobID0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET http://alicegrid17.ba.infn.it:8080/INFN.Grid.FrontEnd/services/QueryJob/SelectJob?IdJob={JobID} application/xml application/xml String false false false false true JobID java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_2xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Jobs><Job><Arguments>http://webtest.ba.infn.it/vicario/FinalFusariumDB_2.nex 5700.fa 10589.fbsse se selknlk noiho niooih r </Arguments><Comment>interactive</Comment><CPUs>7</CPUs><Flag>2dbbd030-2803-43c0-a21d-369a21e17f2b</Flag><Id>349177</Id><LastCheck>2011-11-18 12:54:01.0</LastCheck><Name>MyBlasts</Name><Output/><Provenance/><Status>free</Status></Job></Jobs> /Jobs/Job/Status net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_2_2xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Jobs><Job><Arguments>http://webtest.ba.infn.it/vicario/FinalFusariumDB_2.nex 5700.fa 10589.fbsse se selknlk noiho niooih r </Arguments><Comment>interactive</Comment><CPUs>7</CPUs><Flag>2dbbd030-2803-43c0-a21d-369a21e17f2b</Flag><Id>349177</Id><LastCheck>2011-11-18 12:54:01.0</LastCheck><Name>MyBlasts</Name><Output/><Provenance/><Status>free</Status></Job></Jobs> /Jobs/Job/Output net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String_2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Service_2_2_2xml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Jobs><Job><Arguments>http://testjst.ba.infn.it/giacintoAraneaeNuc.fas 1,2,5 2e-10</Arguments><Comment>interactive</Comment><CPUs>1</CPUs><Flag>46d409fa-c716-4e69-8e2d-0286a2ddd11c</Flag><Id>454291</Id><LastCheck>2012-04-30 11:53:07.0</LastCheck><Name>ProfileFrameFinder</Name><Output/><Provenance/><StadardOutput> </StadardOutput><Status>2104118383</Status></Job></Jobs> /Jobs/Job/StadardOutput net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_Service_2JobIDJobIDXPath_Service_2xml_textREST_Service_2responseBodyMerge_String_List_to_a_StringstringlistXPath_Service_2nodelistXPath_Service_2_2xml_textREST_Service_2responseBodyMerge_String_List_to_a_String_2stringlistXPath_Service_2_2nodelistXPath_Service_2_2_2xml_textREST_Service_2responseBodyStatusMerge_String_List_to_a_StringconcatenatedOutputMerge_String_List_to_a_String_2concatenatedStandardOutputXPath_Service_2_2_2nodelist 5aef3e63-9bb3-4905-9214-52026f781425 2011-11-30 16:10:33.343 UTC a86eb045-aff2-46b1-ad28-5aaa0ca632c8 2011-11-30 17:07:17.999 UTC 7463afe8-60dd-41ae-8777-bcbed7096d16 2012-05-03 07:47:09.188 UTC cbc11548-e4ff-4019-8b24-e791c3461b38 2012-12-19 14:19:03.712 UTC b0bac118-23c2-4a39-8623-ca8608fef0a8 2012-04-30 16:07:36.554 UTC cdf36b60-31c3-441b-85ad-e8b0d3ede120 2011-11-30 16:25:32.213 UTC 6b0f9027-e279-4192-a48c-e7ebf0221d4b 2012-04-02 15:50:57.934 UTC d55f213c-926c-42e9-8661-b736e95873aa 2011-11-30 16:18:57.829 UTC b011ecbe-b67a-4fdb-b2cf-52a24af8b64c 2012-05-03 13:12:30.78 UTC Workflow1File_name00InputBody00REST_Service_responseBodyREST_Service_statusREST_Service_redirectionREST_Servicefile_name0inputBody0responseBody00status00redirection00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity PUT http://testjst.ba.infn.it/openacces/{file_name} application/xml application/xml String false true false false true file_name java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_Servicefile_nameFile_nameREST_ServiceinputBodyInputBodyREST_Service_responseBodyREST_ServiceresponseBodyREST_Service_statusREST_ServicestatusREST_Service_redirectionREST_Serviceredirection 24d62224-217d-46d0-a08a-06b0d60caec4 2012-05-02 07:59:24.107 UTC d56f22a8-96c1-4eb6-bf76-15cda0725ed8 2012-05-07 11:24:02.593 UTC 99b23eb4-ca64-4f27-b08c-bdf3864724e5 2012-05-05 05:33:41.165 UTC 5d1ef777-4da0-4af7-abc1-938cbd13b687 2012-05-05 05:39:03.774 UTC 0ad720e2-8bbd-4aed-96f5-756381173980 2012-04-24 12:19:06.97 UTC b418f0df-28b8-497e-ac5d-a4b478911bd0 2012-05-01 08:36:38.8 UTC 2ee8114d-7999-4833-ba39-97ddb6ff067c 2012-05-03 15:43:09.120 UTC 90744424-a1a0-4107-b358-5e931c677e4a 2012-05-01 08:35:44.460 UTC acb3452e-6be0-4669-9e84-22808ff471cc 2012-05-03 15:46:36.879 UTC d6bd51d4-54a3-4e41-ab79-ee29ecca40cf 2012-05-03 15:34:45.183 UTC 8d4c37f0-a10b-465e-81aa-1c09938a3473 2012-05-01 08:37:47.922 UTC 580e799c-bc6e-42d7-a347-e10430e1af0a 2012-05-05 05:36:11.643 UTC 8513ae60-119a-414f-915e-bca0bb7a7734 2012-05-05 05:31:39.298 UTC 74b3d010-9e53-4df0-8513-43a9a1c30c86 2012-05-10 07:29:59.107 UTC d5aa2bb0-c984-456c-9ec2-df78463f1914 2012-05-01 08:39:00.787 UTC 517fa4a1-06ee-4bd7-980e-5f63e13c2fb2 2012-05-04 08:52:59.585 UTC 49621bfe-01ef-4491-9a3e-d65911feb2a6 2012-05-24 16:26:53.940 UTC 288673db-e11c-4f6a-be9c-57b0c212979d 2012-04-30 14:48:27.139 UTC ffce4883-3f94-487f-9c25-e2e7bcdeb244 2012-05-06 19:42:14.223 UTC d1b49247-0c82-443c-acb1-bab1044296f4 2012-04-30 14:42:33.401 UTC aff47fd7-0af5-47c0-afc2-a6f5ab27b564 2012-04-30 14:16:40.142 UTC ce6b1735-eb91-4d53-8e9b-ff43089857cd 2012-05-02 12:54:46.975 UTC Decodebase64tobyteBase6400out application/octet-stream 2013-01-30 15:59:22.993 UTC text/plain 2013-01-30 15:59:22.993 UTC Byte___to_Stringbytes0string00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity bytes 0 'application/octet-stream' [B true string 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.ByteArrayToString net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDecode_base64_to_bytebase640bytes00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity base64 0 'text/plain' java.lang.String true bytes 0 'application/octet-stream' 0 workflow commons-codec commons-codec 1.3 1635363350 commons-codec:commons-codec:1.3 org.embl.ebi.escience.scuflworkers.java.DecodeBase64 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 0 0 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeByte___to_StringbytesDecode_base64_to_bytebytesDecode_base64_to_bytebase64Base64outByte___to_Stringstring Decode base64 to byte[] 2013-01-30 15:59:23.202 UTC 607cb62e-f538-4b10-ad4d-520d0ab55a1b 2013-01-30 15:59:27.796 UTC 71336a3e-4333-414a-854a-3ca73880f998 2013-01-30 16:08:09.844 UTC Alan R Williams 2013-01-30 15:59:23.202 UTC The decode base64 to byte[] service decodes the base64 string. The byte array is then converted into the string 'Hello world'. 2013-01-30 15:59:23.202 UTC Workflow1GenePartition00 Gene1_pos1 = 1-789\3; Gene1_pos2 = 2-789\3; Gene1_pos3 = 3-789\3; Gene2_pos1 = 790-1449\3; Gene2_pos2 = 791-1449\3; Gene2_pos3 = 792-1449\3; Gene3_pos1 = 1450-2208\3; Gene3_pos2 = 1451-2208\3; Gene3_pos3 = 1452-2208\3; 2012-11-12 15:44:26.975 UTC TestPartitionDefBLText_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity linked,unlinked net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity , net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAddLinestring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2012-11-12 16:07:38.633 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeText_constant_2value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity alignment = test.phy; net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expression_2regex0string0net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestring_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity raxml,mrbayes net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAddLine_2string10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2012-11-12 16:09:44.412 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expression_2_2regex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestring_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity AIC,AICc,BIC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAddLine_2_2string10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2012-11-12 16:09:57.482 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expression_2_2_2regex0string0split11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string 0 'text/plain' java.lang.String true regex 0 'text/plain' java.lang.String true split 1 l('text/plain') 1 workflow org.embl.ebi.escience.scuflworkers.java.SplitByRegex net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeregex_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity \n net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeAddLine_2_2_2string10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2012-11-12 16:05:42.919 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsstring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestring1_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity branchlengths = net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_strings_2string10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestring1_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity models = net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_strings_2_2string10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestring1_value_2value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity model_selection = net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBranchLengthsLinkselectionValues1message0answers11net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity selectionValues 1 text/plain java.lang.String false message 0 text/plain java.lang.String false title 0 text/plain java.lang.String false answers 1 1 http://www.mygrid.org.uk/taverna/internal/biovel/multiple_checkbox.html LocallyPresentedHtml false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeStatCriteriumselectionValues1message0answers11net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity selectionValues 1 text/plain java.lang.String false message 0 text/plain java.lang.String false title 0 text/plain java.lang.String false answers 1 1 http://www.mygrid.org.uk/taverna/internal/biovel/multiple_checkbox.html LocallyPresentedHtml false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePartitionSetsselectionValues1message0answers11net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity selectionValues 1 text/plain java.lang.String false message 0 text/plain java.lang.String false title 0 text/plain java.lang.String false answers 1 1 http://www.mygrid.org.uk/taverna/internal/biovel/multiple_checkbox.html LocallyPresentedHtml false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity inputlist 2 l(l('')) [B true outputlist 1 l('') 1 workflow org.embl.ebi.escience.scuflworkers.java.FlattenList net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1seperator0concatenated00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity stringlist 1 l('text/plain') java.lang.String true seperator 0 'text/plain' java.lang.String true concatenated 0 'text/plain' 0 workflow org.embl.ebi.escience.scuflworkers.java.StringListMerge net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeseperator_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Branch lengths are shared across partitions (linked) or independent (unlinked)? net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_value_2value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity What statistical criterium should be used to compare different models? net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_value_3value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity What partitions should be taken in consideration? Check that partitions are not overlapping. net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokestring2_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity mrbayes net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstringText_constantvalueSplit_string_into_string_list_by_regular_expressionregexregex_valuevalueAddLinestring1Text_constant_2valueAddLinestring2Concatenate_two_stringsoutputSplit_string_into_string_list_by_regular_expression_2regexregex_valuevalueSplit_string_into_string_list_by_regular_expression_2stringstring_valuevalueAddLine_2string1AddLineoutputAddLine_2string2Concatenate_two_strings_2outputSplit_string_into_string_list_by_regular_expression_2_2regexregex_valuevalueSplit_string_into_string_list_by_regular_expression_2_2stringstring_value_1valueAddLine_2_2string1AddLine_2outputAddLine_2_2string2Concatenate_two_strings_2_2outputSplit_string_into_string_list_by_regular_expression_2_2_2regexregex_value_1valueSplit_string_into_string_list_by_regular_expression_2_2_2stringGenePartitionAddLine_2_2_2string1AddLine_2_2outputAddLine_2_2_2string2Merge_String_List_to_a_StringconcatenatedConcatenate_two_stringsstring1string1_valuevalueConcatenate_two_stringsstring2BranchLengthsLinkanswersConcatenate_two_strings_2string1string1_value_1valueConcatenate_two_strings_2string2string2_valuevalueConcatenate_two_strings_2_2string1string1_value_2valueConcatenate_two_strings_2_2string2StatCriteriumanswersBranchLengthsLinkselectionValuesSplit_string_into_string_list_by_regular_expressionsplitBranchLengthsLinkmessagemessage_valuevalueStatCriteriumselectionValuesSplit_string_into_string_list_by_regular_expression_2_2splitStatCriteriummessagemessage_value_2valuePartitionSetsselectionValuesSplit_string_into_string_list_by_regular_expression_2_2_2splitPartitionSetsmessagemessage_value_3valueFlatten_ListinputlistPartitionSetsanswersMerge_String_List_to_a_StringstringlistFlatten_ListoutputlistMerge_String_List_to_a_Stringseperatorseperator_valuevalueTestAddLine_2_2_2outputPartitionDefMerge_String_List_to_a_StringconcatenatedBLBranchLengthsLinkanswers bea60039-1487-408e-ab7f-ae9fbf3d0e26 2012-11-12 15:32:00.915 UTC f2abe179-d96a-4d3b-9e4a-a360a9030520 2012-11-12 15:19:19.643 UTC 50f0cff2-6fd6-4d18-85c5-df126f1e342b 2013-01-30 09:17:38.323 UTC f56367cd-8876-40d9-b0e0-45502d85c6a0 2013-01-30 09:04:48.43 UTC 286a69c3-6302-4d1c-a787-278fad080727 2012-11-12 16:01:05.954 UTC cfb3e923-7c55-4f0a-bf14-569bd22cc752 2012-11-12 16:14:10.632 UTC 097e1982-0bac-4a21-b3a8-d7767c39fe23 2012-11-12 15:29:11.584 UTC 91948479-872a-477b-b56b-073869d927cb 2013-02-18 14:48:42.299 UTC 5295583d-9241-4c02-9979-4c2e86ba3925 2013-02-01 17:23:06.830 UTC 1f8a34d0-dc3b-4b1c-b137-b046eda1474f 2012-11-12 16:08:46.864 UTC 401434ba-30e7-4440-8bdf-ed46318b28fa 2012-11-12 17:50:35.946 UTC 9e91858b-9426-48b9-a804-644955ec199e 2012-11-12 08:22:58.858 UTC 437e3da5-f933-4b84-adee-f7b15d2be6a7 2013-01-30 13:45:17.16 UTC 70d3be26-9ac3-4d0b-a1ea-54be33c25866 2013-01-30 09:12:57.275 UTC 56efae61-d700-404c-ae00-917990e6f177 2012-11-14 11:42:15.476 UTC 7301d737-5a02-448e-9c2e-593e534260fa 2012-11-12 08:24:05.103 UTC 0c74aa00-88fe-4054-8a36-fe079271288b 2013-02-18 14:47:57.525 UTC 3f130b52-a27d-46e1-bf95-0b8901491a21 2013-02-05 07:57:16.896 UTC 5bed52c2-7274-42c2-ba5c-602a84244b10 2013-01-30 09:14:54.76 UTC 7861a683-4ce4-46a3-b3df-244b1e8f71d5 2013-02-05 09:47:42.150 UTC fb12cc76-5149-4ab6-8672-9925934d28e3 2012-11-14 11:58:50.736 UTC 6957a2cb-0985-4c20-94b7-31075e70f908 2012-11-12 16:10:04.480 UTC Workflow14jobID00StatusOutput_PathFastaFileWorkflow36JobID0Status00Output00StandardOuput11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>Status</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + ! Status.equals("done"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow36JobIDjobIDStatusWorkflow36StatusOutput_PathWorkflow36OutputFastaFileWorkflow36StandardOuput 97c8a203-1938-4e3f-90f3-87694c3a795a 2011-11-30 15:59:45.57 UTC 8a70d234-45be-42bd-8bff-039af9b1c962 2011-11-30 16:26:18.954 UTC f209eccd-51b2-48c5-ba45-48f6327a7468 2013-02-19 13:57:48.348 UTC 38b1f6f3-d29c-408a-9360-46930d61cff7 2012-05-04 09:55:44.596 UTC 3aba8bc3-36ee-473d-a504-288a1f9998df 2011-11-30 16:07:49.591 UTC 857db6d7-3775-4738-bf94-5c6a78c1fb8b 2011-11-30 16:00:08.58 UTC be8cd221-9345-4c91-9fb4-b413978b0a6a 2011-11-30 16:05:00.470 UTC eb0a0648-1196-4215-b698-acb8729bf045 2011-11-30 15:47:24.13 UTC 36001f84-a643-4173-80ee-118a0ceaecbc 2011-11-30 17:10:08.264 UTC a65689de-3539-4833-9e3e-c32aa9237d39 2011-11-30 15:52:17.202 UTC 3c9f8d96-0c37-4a18-8214-289acc1482fb 2011-11-30 16:02:25.713 UTC bcc60618-7449-4965-b39d-d0d6d90ec7db 2011-11-30 15:49:46.56 UTC 5f07e956-6857-4261-ae1e-1ab5ba32ab08 2011-11-30 16:07:05.176 UTC e2682dca-1389-49ad-a886-491fa918d268 2011-11-30 15:54:01.684 UTC 4afab38a-1fec-43b4-8a32-83eaa59e8b8d 2011-11-30 15:53:41.975 UTC a3848c5b-b720-4bc7-8e8a-d0a4e305b43f 2012-04-02 16:09:05.883 UTC bed4b280-a552-4ad9-8bfe-54a2fabae11f 2012-04-05 09:41:33.486 UTC 0ca845f5-dbee-4c11-8b69-2843a6c7e40e 2012-05-03 15:26:02.481 UTC 25d638c9-672c-498e-913b-4bceb4230f8e 2011-11-30 17:10:59.924 UTC 2bb836b5-2738-4f3f-864d-5a77e76bdd1f 2011-11-30 17:09:13.282 UTC b9cf606e-166f-471c-b51e-d2f517526ad1 2011-11-30 17:00:56.590 UTC 0b2a7cd3-3853-434d-b462-4a2d7796ea7d 2011-11-30 15:48:49.960 UTC 4cc9395d-b178-451b-aef7-a34678d0d490 2011-11-30 15:51:55.76 UTC 15c52e11-e32b-46b2-857c-89226396dc45 2011-11-30 15:41:58.998 UTC a2b6b247-c946-4883-8d6d-469ea6573f93 2011-11-30 15:51:07.192 UTC 745b7346-e8be-4864-ba02-1ae1d255f50d 2012-04-05 09:28:59.571 UTC bda5ff28-ff17-4ff2-9191-13acd55b73f3 2011-11-30 17:07:35.484 UTC 7b7863ae-a026-4317-8084-9a00049fccf8 2012-04-05 11:23:09.57 UTC Workflow14Name00Argument00StatusOutput_PathGeoKS_ResultREST_Servicename0arguments0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET http://alicegrid17.ba.infn.it:8080/INFN.Grid.FrontEnd/services/QueryJob/InsertJobs?NAME={name}&arguments={arguments} application/xml application/xml String false false false false true arguments java.lang.String name java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Job><Name>blast</Name><Flag>7772590c-d7ab-4b76-98b9-aa293c6c34fe</Flag><JobsID><JobId>454118</JobId></JobsID></Job> /Job/JobsID/JobId net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeWorkflow36JobID0Status00Output00StandardOuput11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>Status</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + ! Status.equals("done"); if ("true".matches(loop)) { Thread.sleep(5000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_ServicenameNameREST_ServiceargumentsArgumentXPath_Servicexml_textREST_ServiceresponseBodyWorkflow36JobIDXPath_ServicenodelistStatusWorkflow36StatusOutput_PathWorkflow36OutputGeoKS_ResultWorkflow36StandardOuput b9cf606e-166f-471c-b51e-d2f517526ad1 2011-11-30 17:00:56.590 UTC 2bb836b5-2738-4f3f-864d-5a77e76bdd1f 2011-11-30 17:09:13.282 UTC a2b6b247-c946-4883-8d6d-469ea6573f93 2011-11-30 15:51:07.192 UTC 172155eb-f362-4e26-a727-3dadee48b001 2012-06-08 08:32:03.597 UTC 5f07e956-6857-4261-ae1e-1ab5ba32ab08 2011-11-30 16:07:05.176 UTC 38b1f6f3-d29c-408a-9360-46930d61cff7 2012-05-04 09:55:44.596 UTC 8a70d234-45be-42bd-8bff-039af9b1c962 2011-11-30 16:26:18.954 UTC 15c52e11-e32b-46b2-857c-89226396dc45 2011-11-30 15:41:58.998 UTC 0b2a7cd3-3853-434d-b462-4a2d7796ea7d 2011-11-30 15:48:49.960 UTC 36001f84-a643-4173-80ee-118a0ceaecbc 2011-11-30 17:10:08.264 UTC 97c8a203-1938-4e3f-90f3-87694c3a795a 2011-11-30 15:59:45.57 UTC bcc60618-7449-4965-b39d-d0d6d90ec7db 2011-11-30 15:49:46.56 UTC 7b7863ae-a026-4317-8084-9a00049fccf8 2012-04-05 11:23:09.57 UTC bed4b280-a552-4ad9-8bfe-54a2fabae11f 2012-04-05 09:41:33.486 UTC 3aba8bc3-36ee-473d-a504-288a1f9998df 2011-11-30 16:07:49.591 UTC 3c9f8d96-0c37-4a18-8214-289acc1482fb 2011-11-30 16:02:25.713 UTC eb0a0648-1196-4215-b698-acb8729bf045 2011-11-30 15:47:24.13 UTC cd9f15fa-0819-4ddd-b6ab-6778ac424da1 2012-06-08 09:36:42.175 UTC 25d638c9-672c-498e-913b-4bceb4230f8e 2011-11-30 17:10:59.924 UTC a3848c5b-b720-4bc7-8e8a-d0a4e305b43f 2012-04-02 16:09:05.883 UTC a65689de-3539-4833-9e3e-c32aa9237d39 2011-11-30 15:52:17.202 UTC 745b7346-e8be-4864-ba02-1ae1d255f50d 2012-04-05 09:28:59.571 UTC be8cd221-9345-4c91-9fb4-b413978b0a6a 2011-11-30 16:05:00.470 UTC bda5ff28-ff17-4ff2-9191-13acd55b73f3 2011-11-30 17:07:35.484 UTC 0ca845f5-dbee-4c11-8b69-2843a6c7e40e 2012-05-03 15:26:02.481 UTC e2682dca-1389-49ad-a886-491fa918d268 2011-11-30 15:54:01.684 UTC 4cc9395d-b178-451b-aef7-a34678d0d490 2011-11-30 15:51:55.76 UTC 857db6d7-3775-4738-bf94-5c6a78c1fb8b 2011-11-30 16:00:08.58 UTC 4afab38a-1fec-43b4-8a32-83eaa59e8b8d 2011-11-30 15:53:41.975 UTC Workflow14Argument00StatusOutput_PathNewickTreesREST_Servicearguments0name0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET http://alicegrid17.ba.infn.it:8080/INFN.Grid.FrontEnd/services/QueryJob/InsertJobs?NAME={name}&arguments={arguments} application/xml application/xml String false false false false true arguments java.lang.String name java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Job><Name>blast</Name><Flag>7772590c-d7ab-4b76-98b9-aa293c6c34fe</Flag><JobsID><JobId>454118</JobId></JobsID></Job> /Job/JobsID/JobId net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeResultsRetrieving_ConsensusJobID0Status00Output00StandardOuput11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>Status</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + ! Status.equals("done"); if ("true".matches(loop)) { Thread.sleep(5000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeconsensus_xmlvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity consensus_xml net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_ServiceargumentsArgumentREST_Servicenameconsensus_xmlvalueXPath_Servicexml_textREST_ServiceresponseBodyResultsRetrieving_ConsensusJobIDXPath_ServicenodelistStatusResultsRetrieving_ConsensusStatusOutput_PathResultsRetrieving_ConsensusOutputNewickTreesResultsRetrieving_ConsensusStandardOuput 8a70d234-45be-42bd-8bff-039af9b1c962 2011-11-30 16:26:18.954 UTC 36001f84-a643-4173-80ee-118a0ceaecbc 2011-11-30 17:10:08.264 UTC 857db6d7-3775-4738-bf94-5c6a78c1fb8b 2011-11-30 16:00:08.58 UTC 5f07e956-6857-4261-ae1e-1ab5ba32ab08 2011-11-30 16:07:05.176 UTC a2b6b247-c946-4883-8d6d-469ea6573f93 2011-11-30 15:51:07.192 UTC 4afab38a-1fec-43b4-8a32-83eaa59e8b8d 2011-11-30 15:53:41.975 UTC 7b7863ae-a026-4317-8084-9a00049fccf8 2012-04-05 11:23:09.57 UTC 38b1f6f3-d29c-408a-9360-46930d61cff7 2012-05-04 09:55:44.596 UTC 15c52e11-e32b-46b2-857c-89226396dc45 2011-11-30 15:41:58.998 UTC 3aba8bc3-36ee-473d-a504-288a1f9998df 2011-11-30 16:07:49.591 UTC e2682dca-1389-49ad-a886-491fa918d268 2011-11-30 15:54:01.684 UTC 0b2a7cd3-3853-434d-b462-4a2d7796ea7d 2011-11-30 15:48:49.960 UTC 2bb836b5-2738-4f3f-864d-5a77e76bdd1f 2011-11-30 17:09:13.282 UTC 03dca5b4-05db-47ed-9c8c-69551b1653e8 2012-09-21 14:59:11.614 UTC bda5ff28-ff17-4ff2-9191-13acd55b73f3 2011-11-30 17:07:35.484 UTC bcc60618-7449-4965-b39d-d0d6d90ec7db 2011-11-30 15:49:46.56 UTC eb0a0648-1196-4215-b698-acb8729bf045 2011-11-30 15:47:24.13 UTC 4cc9395d-b178-451b-aef7-a34678d0d490 2011-11-30 15:51:55.76 UTC 172155eb-f362-4e26-a727-3dadee48b001 2012-06-08 08:32:03.597 UTC 745b7346-e8be-4864-ba02-1ae1d255f50d 2012-04-05 09:28:59.571 UTC 5688bad2-fad3-4ffb-847b-f17902899809 2012-09-21 10:06:17.749 UTC 3c9f8d96-0c37-4a18-8214-289acc1482fb 2011-11-30 16:02:25.713 UTC be8cd221-9345-4c91-9fb4-b413978b0a6a 2011-11-30 16:05:00.470 UTC a65689de-3539-4833-9e3e-c32aa9237d39 2011-11-30 15:52:17.202 UTC 97c8a203-1938-4e3f-90f3-87694c3a795a 2011-11-30 15:59:45.57 UTC 25d638c9-672c-498e-913b-4bceb4230f8e 2011-11-30 17:10:59.924 UTC bed4b280-a552-4ad9-8bfe-54a2fabae11f 2012-04-05 09:41:33.486 UTC b9cf606e-166f-471c-b51e-d2f517526ad1 2011-11-30 17:00:56.590 UTC 736db278-dce1-4fc7-bc82-4db29920f6b7 2012-10-01 14:31:19.648 UTC a3848c5b-b720-4bc7-8e8a-d0a4e305b43f 2012-04-02 16:09:05.883 UTC 0ca845f5-dbee-4c11-8b69-2843a6c7e40e 2012-05-03 15:26:02.481 UTC cd9f15fa-0819-4ddd-b6ab-6778ac424da1 2012-06-08 09:36:42.175 UTC Workflow14Name00Argument00JobIDREST_Servicename0arguments0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET http://alicegrid17.ba.infn.it:8080/INFN.Grid.FrontEnd/services/QueryJob/InsertJobs?NAME={name}&arguments={arguments} application/xml application/xml String false false false false true arguments java.lang.String name java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Job><Name>blast</Name><Flag>7772590c-d7ab-4b76-98b9-aa293c6c34fe</Flag><JobsID><JobId>454118</JobId></JobsID></Job> /Job/JobsID/JobId net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_ServicenameNameREST_ServiceargumentsArgumentXPath_Servicexml_textREST_ServiceresponseBodyJobIDXPath_Servicenodelist 25d638c9-672c-498e-913b-4bceb4230f8e 2011-11-30 17:10:59.924 UTC 4cc9395d-b178-451b-aef7-a34678d0d490 2011-11-30 15:51:55.76 UTC 2bb836b5-2738-4f3f-864d-5a77e76bdd1f 2011-11-30 17:09:13.282 UTC e2682dca-1389-49ad-a886-491fa918d268 2011-11-30 15:54:01.684 UTC a2b6b247-c946-4883-8d6d-469ea6573f93 2011-11-30 15:51:07.192 UTC eb0a0648-1196-4215-b698-acb8729bf045 2011-11-30 15:47:24.13 UTC 745b7346-e8be-4864-ba02-1ae1d255f50d 2012-04-05 09:28:59.571 UTC a65689de-3539-4833-9e3e-c32aa9237d39 2011-11-30 15:52:17.202 UTC 4afab38a-1fec-43b4-8a32-83eaa59e8b8d 2011-11-30 15:53:41.975 UTC 38b1f6f3-d29c-408a-9360-46930d61cff7 2012-05-04 09:55:44.596 UTC 97c8a203-1938-4e3f-90f3-87694c3a795a 2011-11-30 15:59:45.57 UTC 3aba8bc3-36ee-473d-a504-288a1f9998df 2011-11-30 16:07:49.591 UTC 0ca845f5-dbee-4c11-8b69-2843a6c7e40e 2012-05-03 15:26:02.481 UTC 857db6d7-3775-4738-bf94-5c6a78c1fb8b 2011-11-30 16:00:08.58 UTC bc601486-bec4-4b2c-a46e-ea71c6fab18e 2013-02-19 07:43:01.213 UTC 3c9f8d96-0c37-4a18-8214-289acc1482fb 2011-11-30 16:02:25.713 UTC bed4b280-a552-4ad9-8bfe-54a2fabae11f 2012-04-05 09:41:33.486 UTC a3848c5b-b720-4bc7-8e8a-d0a4e305b43f 2012-04-02 16:09:05.883 UTC 7b7863ae-a026-4317-8084-9a00049fccf8 2012-04-05 11:23:09.57 UTC 5f07e956-6857-4261-ae1e-1ab5ba32ab08 2011-11-30 16:07:05.176 UTC 36001f84-a643-4173-80ee-118a0ceaecbc 2011-11-30 17:10:08.264 UTC bda5ff28-ff17-4ff2-9191-13acd55b73f3 2011-11-30 17:07:35.484 UTC 8a70d234-45be-42bd-8bff-039af9b1c962 2011-11-30 16:26:18.954 UTC be8cd221-9345-4c91-9fb4-b413978b0a6a 2011-11-30 16:05:00.470 UTC 15c52e11-e32b-46b2-857c-89226396dc45 2011-11-30 15:41:58.998 UTC 0b2a7cd3-3853-434d-b462-4a2d7796ea7d 2011-11-30 15:48:49.960 UTC b9cf606e-166f-471c-b51e-d2f517526ad1 2011-11-30 17:00:56.590 UTC bcc60618-7449-4965-b39d-d0d6d90ec7db 2011-11-30 15:49:46.56 UTC Workflow31NewickString00DummyOutputPhylowidgetUrl_FormatNewickString0output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity NewickString 0 'text/plain' java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2012-09-27 14:39:23.133 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeOpen_web_browser_at_a_URLurl0net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity url 0 text/plain java.lang.String true workflow net.sourceforge.taverna.scuflworkers.net.BrowseUrl net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_Dummyvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Dummy net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokePhylowidgetUrl_FormatNewickStringNewickStringOpen_web_browser_at_a_URLurlPhylowidgetUrl_FormatoutputDummyOutputString_Dummyvalue 51ceffe6-96f1-4c6a-90dd-3f1592ae64ef 2012-09-19 13:43:51.58 UTC e5db23d7-2d15-4289-a578-848005d60517 2012-10-01 10:21:11.664 UTC 708f85ff-84f0-4cbf-9b1a-d51ee37546d0 2012-09-19 14:20:01.726 UTC 8466c904-a52b-4cc0-b17c-fb262ace7e2a 2012-10-01 10:20:05.561 UTC dcf9de06-cf7c-4eea-b489-02191f6ca434 2012-09-19 14:17:48.154 UTC 78ac2c65-bf08-4d50-81a5-e08a5a57a84b 2012-09-27 14:39:35.106 UTC fd4ec537-c4ae-4723-bdda-806c22763297 2012-09-19 13:53:54.502 UTC 4506e1eb-0813-4cd1-aac7-cd0b709a8037 2012-09-19 13:58:10.513 UTC b4cfd2e4-e9ce-4e4e-9682-b1121b3d5c2b 2012-09-27 14:48:25.177 UTC 173b1324-1c04-4f17-aec5-ae978e4ca45c 2012-09-19 14:15:51.875 UTC Workflow20Sentinel00DummyOutText_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Ciao net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity MCMC numerical integration failed to converge. It is recommended to run MrBayes with more generations. net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketellmessage0title0net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 tell VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketitle_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Convergence Failed net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketellmessagemessage_valuevaluetelltitletitle_valuevalueDummyOutText_constantvalue 7a13a605-e452-4af0-bb33-cff662b89278 2012-11-28 17:12:13.145 UTC 6be543cf-0a7e-4305-b7fc-1efaee8b413c 2012-11-28 17:08:36.500 UTC ac938b2a-fe53-450b-8315-fd10b043ea40 2012-11-28 17:07:09.459 UTC Selecting_EvolutionaMSA_fasta00 >ABY27676/1-453 ABY27676 ------------------------------------------------------------------------ ------------------------------------------------------------------------ ------------------------------------------------------------TTAATATTAGGA GCTCCAGATATAGCTTTTCCTCGAATAAATAATCTTAGTTTTTGGTTGCTTCCTCCTTCTTTGATTTTATTA ATAATTTCTTCAATAGTGGAGATAGGGGTTGGGGCGGGGTGAACTATTTATCCTCCTTTATCGGGTAGTCTA GGTCATTCAGGGGTTTCAGTAGATTTAGCTATTTTTAGCTTACATTTGGCGGGAGCTTCTTCAATTATAGGA GCAATTAATTTTATTTCCACTATTTTAAATATACGTTCAGTTGGGATATCTATAGATAAGGTACCTTTATTT GTGTGATCTGTATTAGTTACTGCTGTTTTATTATTATTATCTTTACCAGTTTTAGCCTGGGGTATTACGATA TTATTAACAGATCGAAATTTTAACACTTCTTTTTTTGACCCTGCGGGTGGAGGTGATCCAATTTTATTTCAA CATCTTTTT >ADW61587/1-657 ADW61587 ACGTTATATTTAATATTTGGGGCTTGAGCTGCTATAGTAGGAACAGCCATAAGAGTATTAATTCGAATTGAA TTAGGTCAACCTGGGAGGTTTATTGGGGATGATCAATTATATAATGTAATCGTTACTGCTCATGCATTTGTT ATAATTTTTTTTATAGTAATACCTATTTTGATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATATTAGGC GCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGCTACTCCCTCCTTCATTATTTTTATTA ATTATTTCTTCTATAGTAGAAATGGGAGTGGGGGCAGGATGGACGGTTTATCCTCCTTTAGCTAGTTTAGAG GGCCATGCTGGCAGGTCAGTGGATTTTGCTATTTTTTCTTTACATTTAGCGGGGGCCTCCTCTATTATGGGG GCTATTAATTTTATTTCTACTATTATTAATATACGATCGCATGGAATAACTATAGAAAAAGTACCTTTATTT GTATGATCAGTATTGATTACTGCTGTATTATTATTATTATCACTTCCAGTATTGGCGGGGGCTATCACAATA TTATTAACTGATCGAAATTTTAATACTTCGTTTTTTGACCCTTCAGGAGGGGGGGATCCAATCCTTTTCCAA CATTTATTT >AEE92862/1-657 AEE92862 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATGGTAACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATA TTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAG CATTTATTT >AEC60810/1-657 AEC60810 ACTTTGTATTTATTGTTTGGTATTTGATCTGCTATAATGGGAACGGCAATAAGAGTGATTATTCGAATTGAA TTAGGTCAAGTTGGAAGATTGTTGGGTGATGATCATTTATATAATGTAATTGTAACAGCACATGCTTTGGTT ATGATTTTTTTTATAGTTATACCGATTTTGATTGGTGGATTTGGAAATTGAATAGTTCCTTTGATGTTAGGT GCTCCAGATATAGCATTCCCACGTATAAATAATTTGAGATTTTGATTGCTTCCTCCATCATTATTTTTGTTA TTATTATCTTCTTTAACAGATGTAGGGGTTGGAGCCGGGTGAACTATTTATCCTCCTTTATCCTCTGGGGTT GGACATAGAGGGGGGGGGATGGATTTTGCTATTTTTTCTTTACATTTAGCAGGAGCTTCATCTATTATAGGG GCGATTAATTTTATTACAACAATTATTAATATGCGAAGATTTGGAATAACAATAGAACGTGTACCTTTATTT GTGTGATCAGTTCTTATTACTACTATTTTATTATTGCTTTCTTTACCTGTATTGGCTGGTGCTATTACTATA TTGTTGACTGATCGAAATTTCAATACTTCTTTTTTTGATCCTGCTGGAGGTGGTGATCCTATTTTGTTTCAA CATTTATTT >AEE92861/1-633 AEE92861 ------------------------TGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAATATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >AEE92860/1-648 AEE92860 ---------TTTGTTTTTGGAGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >ADD09384/1-555 ADD09384 ------------------------------------------------------------------------ ------------------------------TATCAGCTATACAATGTATTAATTACCGCTCATGCTATAATT ATGGTATTTTTCATGATTATGCCAGCTTTATTTGGTGGATTTGGTAATTACTTTGTACCAATTTTAATAGGT GCCCCGGATATGGCTTTTCCTAGGCTAAATAATATAAGTTTTTGGCTACTTGTCCCTGCTTTTATATTATTA ATGCTGTCAGGTTTGGTTGATGGAGGAGCTGGTACTGGCTGGACACTGTATCCTCCTCTAAGTAGTATAGTA GGGCATCCTGGCGCTGCTGTCGATATGGCTATTTTAAGCTTACATCTTACAGGGCTTTCCTCCATTCTTGGT TCAATTAATATGATTGTCACTATCTTTAATATGAGAACTGATGGTATGGGGTTATTTGAAATGCCCTTATTT GTTTGGTCAATTTTGGTTACTGCCTTCTTGCTGATACTAGCAATTCCTGTGTTAGGGGGTGCAATAACCATG TTACTGACTGATCGAAATTTTGGTACTACTTTTTTCAAGCCTGATGGTGGCGGAGATCCAGTGTTATTTCAG CATTTATTT >ADJ82639/1-645 ADJ82639 ACTTTATATTTAATGTTTGGGGTTTGGTCAGCTATAATAGGAACTGCTATAAGAGTATTAATTCGAATGGAA TTAGGGAATCCTGGTAGATTGTTAGGTGATGATCATTTGTATAATGTTATAGTTACTGCTCATGCTTTTGTA ATAATTTTTTTTATAGTAATGCCTATTCTTATTGGAGGTTTTGGAAATTGATTAGTTCCTTTAATATTAGGA GCTCCAGATATATCATTTCCTCGAATAAATAATCTTTCTTTTTGATTATTACCTCCTTCTTTATTTTTGTTA TCTATATCTTCTATAGTAGAAATAGGAGTTGGGGCTGGGTGAACTGTTTATCCTCCTTTAGCGTCTACAGTT GGGCACATAGGAAATTCAATAGATTTTGCTATTTTTTCTCTTCATTTAGCTGGAGCTTCTTCTATTATAGGA GCTGTAAATTTTATTTCTACCATTATTAATATACGAATATTAGGAATATCTATAGAGAAGGTTCCTCTTTTT GTTTGATCAGTTTTAATTACAGCAGTATTATTATTACTTTCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACAGATCGAAATTTTAATACTTCTTTTTTTGATCCTGCTGGGGGAGGAGATCCTAATTTATTT--- --------- >ADQ21240/1-648 ADQ21240 AGATTATATTTTGTTTTTGGGGCTTGAGCTGCTATAGTAGGAACAGCAATAAGAGTATTAATTCGTGTTGAG TTGGGACAAACTGGTAGTTTGTTAGGGGATGATCAGTTGTATAATGTTATTGTTACGGCTCATGCTTTTGTA ATAATTTTTTTTATAGTTATGCCTATTTTAATTGGGGGTTTTGGAAATTGGCTGATTCCACTAATACTAGGA GCTCCGGATATAGCTTTCCCTCGTATAAATAATTTGAGATTTTGGCTTTTACCCCCTTCTTTATTATTACTG TTTATTTCAAGCATAGATGAGATAGGAGTGGGGGCGGGATGAACGGTTTACCCCCCTCTTGCCTCTTTAGAG GGACATTCTGGTAGTTCAGTAGATTTTGCTATTTTTTCTTTACACTTAGCTGGAGCGTCTTCTATTATAGGG GCTATTAATTTTATTTCCACAATTTTGAATATACGGGGTTATGGAATATCTATAGAAAAAGTACCTTTATTT GTTTGGTCCGTGTTAATTACAGCTGTATTATTATTGTTATCTCTTCCTGTGTTAGCTGGGGCTATCACAATA TTACTGACGGATCGTAATTTTAATACTTCATTTTTTGATCCTTGTGGGGGGGGGGATCCTGTTTTGTTTCAA --------- >AEE92882/1-657 AEE92882 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATTGTAACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATA TTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAG CATTTATTT >ADW58691/1-657 ADW58691 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAA TTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTT ATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGT GCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTATTACCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATAGTTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTA GGTCATATGGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGA GCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTT GTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAA CATTTATTT >ADW58631/1-657 ADW58631 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAA TTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTT ATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGT GCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTACTACCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATAGCTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTA GGTCATATAGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGA GCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTT GTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATA TTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAA CATTTATTT >ACM89220/1-657 ACM89220 ACTTTATATTTTTTATTTGGTACTTGATCAGCAATAATTGGTACAGCAATAAGTGTTTTAATTCGTGTTGAA CTAGGATTTTCTGGAAGATTTTTAGGTGATGATCATTTATATAATGTAATTGTTACTGCTCATGCTTTTATT ATAATTTTTTTTATAGTTATACCTATTTTAATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAAGA GCTCCAGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGTTACTACCTCCTTCGTTATTATTGTTA TTTATTTCTTCTATGGTTGAAATCGGAGTTGGAGCAGGGTGGACTATTTATCCTCCTTTATCTTCTTCTGTG GGTCATTCTGGTGCATCTATGGATTTTGCAATTTTTTCTCTTCATTTAGCTGGTGCTTCTTCTATTATAGGT GCTATTAATTTTATTTCAACAATTATTAATATACGACCTTATGGTATAAGAATAGAAAAGATTCCTTTATTT GTATGATCTGTATTAATTACAGCTGTCTTATTATTATTATCATTACCAGTATTAGCTGGGGCTATTACTATA CTTTTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCAGCTGGGGGTGGGGATCCAATTTTATTTCAG CATTTATTT >AEE92867/1-642 AEE92867 ---------------TTTGGGGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAG TTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTA ATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGA GCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTG GTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTT GGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGG GCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTT GTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATA TTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAA CATTTATTT >ADH12119/1-645 ADH12119 ACTTTATACTTGGTTTTTGGTGCTTGAGCGGCTATGGTTGGAACTGCAATAAGTGTTTTAATTCGAATTGAG TTGGGGCAATCTGGTAGATTTATGGGAGATGATCAGTTGTATAATGTTATTGTAACTGCTCATGCTTTTGTT ATAATTTTTTTTATGGTTATGCCTATTTTGATTGGGGGCTTTGGTAATTGACTGGTTCCTTTGATGTTGGGG GCTCCTGATATGGCTTTTCCTCGCATGAATAATTTAAGGTTTTGATTATTGCCTCCTTCTTTATTTTTATTA TTTATTTCTTCTATGGTGGAAATAGGGGTTGGGGCTGGTTGAACGATCTACCCTCCTTTAGCGTCTCTAGAA GGACATTCAGGAAGTTCGGTTGATTTTGCCATTTTTTCTTTGCATTTGGCTGGGGCCTCTTCTATTATAGGG GCTATTAATTTTATTTCTACAATTTTGAATATACGGTCTTATGGGATGTCTATGGAAAAAGTTCCTTTGTTT GTTTGGTCGGTTTTAATTACTGCTGTTTTGCTCCTATTATCACTTCCGGTTTTAGCTGGGGCTATCACTATG TTATTAACTGATCGAAATTTTAATACATCGTTTTTTGATCCTTCGGGGGGAGGGGATCCTATTTTTTTT--- --------- 2013-02-05 15:52:46.438 UTC Multiple Sequence Alignment (MSA) in fasta format 2013-02-05 15:53:08.681 UTC PossiblePartition00 Gene1_pos1 = 1-657\3; Gene1_pos2 = 2-657\3; Gene1_pos3 = 3-657\3; 2013-02-05 15:53:24.969 UTC Partitioning of the MSA using nexus/raxml -like syntax 2013-02-05 15:54:20.767 UTC Path Path to obtain full folder of ouput of PartitionFinder 2013-02-05 15:58:50.495 UTC PartitionFinderOuput Best scheme according to Greedy algorithm, analysed with aic Scheme Name : 1 Scheme lnL : -3580.51738 Scheme AIC : 7267.03476 Scheme AICc : 7276.52729731 Scheme BIC : 7504.88201298 Num params : 53 Num sites : 657 Num subsets : 3 Subset | Best Model | Subset Partitions | Subset Sites | Alignment 1 | GTR+I+G | Gene1_pos1 | 1-657\3 | ./analysis/phyml/50bf1643d2a386419c9264eccd173b6b.phy 2 | GTR+G | Gene1_pos2 | 2-657\3 | ./analysis/phyml/70bf411485fb1fe3503bc4f094e24b4a.phy 3 | HKY+G | Gene1_pos3 | 3-657\3 | ./analysis/phyml/2d8c90733ab81be78313d5cf934c6639.phy Scheme Description in PartitionFinder format Scheme_1 = (Gene1_pos1) (Gene1_pos2) (Gene1_pos3); RaxML-style partition definitions DNA, p1 = 1-657\3 DNA, p2 = 2-657\3 DNA, p3 = 3-657\3 2013-02-05 15:55:19.431 UTC Text output of best model description of PartitionFinder program 2013-02-05 15:54:51.565 UTC MrBayesInput #Nexus begin data; dimensions ntax=15 nchar=657; format datatype=dna interleave=no gap=- missing=? Matchchar=.; matrix ABY27676/1-453_ABY27676 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATTAGGAGCTCCAGATATAGCTTTTCCTCGAATAAATAATCTTAGTTTTTGGTTGCTTCCTCCTTCTTTGATTTTATTAATAATTTCTTCAATAGTGGAGATAGGGGTTGGGGCGGGGTGAACTATTTATCCTCCTTTATCGGGTAGTCTAGGTCATTCAGGGGTTTCAGTAGATTTAGCTATTTTTAGCTTACATTTGGCGGGAGCTTCTTCAATTATAGGAGCAATTAATTTTATTTCCACTATTTTAAATATACGTTCAGTTGGGATATCTATAGATAAGGTACCTTTATTTGTGTGATCTGTATTAGTTACTGCTGTTTTATTATTATTATCTTTACCAGTTTTAGCCTGGGGTATTACGATATTATTAACAGATCGAAATTTTAACACTTCTTTTTTTGACCCTGCGGGTGGAGGTGATCCAATTTTATTTCAACATCTTTTT ADW61587/1-657_ADW61587 ACGTTATATTTAATATTTGGGGCTTGAGCTGCTATAGTAGGAACAGCCATAAGAGTATTAATTCGAATTGAATTAGGTCAACCTGGGAGGTTTATTGGGGATGATCAATTATATAATGTAATCGTTACTGCTCATGCATTTGTTATAATTTTTTTTATAGTAATACCTATTTTGATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATATTAGGCGCTCCTGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGCTACTCCCTCCTTCATTATTTTTATTAATTATTTCTTCTATAGTAGAAATGGGAGTGGGGGCAGGATGGACGGTTTATCCTCCTTTAGCTAGTTTAGAGGGCCATGCTGGCAGGTCAGTGGATTTTGCTATTTTTTCTTTACATTTAGCGGGGGCCTCCTCTATTATGGGGGCTATTAATTTTATTTCTACTATTATTAATATACGATCGCATGGAATAACTATAGAAAAAGTACCTTTATTTGTATGATCAGTATTGATTACTGCTGTATTATTATTATTATCACTTCCAGTATTGGCGGGGGCTATCACAATATTATTAACTGATCGAAATTTTAATACTTCGTTTTTTGACCCTTCAGGAGGGGGGGATCCAATCCTTTTCCAACATTTATTT AEE92862/1-657_AEE92862 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAGTTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATGGTAACTGCTCATGCTTTAGTAATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGAGCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTGGTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTTGGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGGGCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTTGTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATATTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAGCATTTATTT AEC60810/1-657_AEC60810 ACTTTGTATTTATTGTTTGGTATTTGATCTGCTATAATGGGAACGGCAATAAGAGTGATTATTCGAATTGAATTAGGTCAAGTTGGAAGATTGTTGGGTGATGATCATTTATATAATGTAATTGTAACAGCACATGCTTTGGTTATGATTTTTTTTATAGTTATACCGATTTTGATTGGTGGATTTGGAAATTGAATAGTTCCTTTGATGTTAGGTGCTCCAGATATAGCATTCCCACGTATAAATAATTTGAGATTTTGATTGCTTCCTCCATCATTATTTTTGTTATTATTATCTTCTTTAACAGATGTAGGGGTTGGAGCCGGGTGAACTATTTATCCTCCTTTATCCTCTGGGGTTGGACATAGAGGGGGGGGGATGGATTTTGCTATTTTTTCTTTACATTTAGCAGGAGCTTCATCTATTATAGGGGCGATTAATTTTATTACAACAATTATTAATATGCGAAGATTTGGAATAACAATAGAACGTGTACCTTTATTTGTGTGATCAGTTCTTATTACTACTATTTTATTATTGCTTTCTTTACCTGTATTGGCTGGTGCTATTACTATATTGTTGACTGATCGAAATTTCAATACTTCTTTTTTTGATCCTGCTGGAGGTGGTGATCCTATTTTGTTTCAACATTTATTT AEE92861/1-633_AEE92861 ------------------------TGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAGTTGGGGCAAGTGGGAATATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTAATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGAGCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTGGTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTTGGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGGGCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTTGTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATATTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAACATTTATTT AEE92860/1-648_AEE92860 ---------TTTGTTTTTGGAGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAGTTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTAATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGAGCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTGGTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTTGGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGGGCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTTGTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATATTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAACATTTATTT ADD09384/1-555_ADD09384 ------------------------------------------------------------------------------------------------------TATCAGCTATACAATGTATTAATTACCGCTCATGCTATAATTATGGTATTTTTCATGATTATGCCAGCTTTATTTGGTGGATTTGGTAATTACTTTGTACCAATTTTAATAGGTGCCCCGGATATGGCTTTTCCTAGGCTAAATAATATAAGTTTTTGGCTACTTGTCCCTGCTTTTATATTATTAATGCTGTCAGGTTTGGTTGATGGAGGAGCTGGTACTGGCTGGACACTGTATCCTCCTCTAAGTAGTATAGTAGGGCATCCTGGCGCTGCTGTCGATATGGCTATTTTAAGCTTACATCTTACAGGGCTTTCCTCCATTCTTGGTTCAATTAATATGATTGTCACTATCTTTAATATGAGAACTGATGGTATGGGGTTATTTGAAATGCCCTTATTTGTTTGGTCAATTTTGGTTACTGCCTTCTTGCTGATACTAGCAATTCCTGTGTTAGGGGGTGCAATAACCATGTTACTGACTGATCGAAATTTTGGTACTACTTTTTTCAAGCCTGATGGTGGCGGAGATCCAGTGTTATTTCAGCATTTATTT ADJ82639/1-645_ADJ82639 ACTTTATATTTAATGTTTGGGGTTTGGTCAGCTATAATAGGAACTGCTATAAGAGTATTAATTCGAATGGAATTAGGGAATCCTGGTAGATTGTTAGGTGATGATCATTTGTATAATGTTATAGTTACTGCTCATGCTTTTGTAATAATTTTTTTTATAGTAATGCCTATTCTTATTGGAGGTTTTGGAAATTGATTAGTTCCTTTAATATTAGGAGCTCCAGATATATCATTTCCTCGAATAAATAATCTTTCTTTTTGATTATTACCTCCTTCTTTATTTTTGTTATCTATATCTTCTATAGTAGAAATAGGAGTTGGGGCTGGGTGAACTGTTTATCCTCCTTTAGCGTCTACAGTTGGGCACATAGGAAATTCAATAGATTTTGCTATTTTTTCTCTTCATTTAGCTGGAGCTTCTTCTATTATAGGAGCTGTAAATTTTATTTCTACCATTATTAATATACGAATATTAGGAATATCTATAGAGAAGGTTCCTCTTTTTGTTTGATCAGTTTTAATTACAGCAGTATTATTATTACTTTCTTTACCTGTTTTAGCAGGTGCTATTACTATATTATTAACAGATCGAAATTTTAATACTTCTTTTTTTGATCCTGCTGGGGGAGGAGATCCTAATTTATTT------------ ADQ21240/1-648_ADQ21240 AGATTATATTTTGTTTTTGGGGCTTGAGCTGCTATAGTAGGAACAGCAATAAGAGTATTAATTCGTGTTGAGTTGGGACAAACTGGTAGTTTGTTAGGGGATGATCAGTTGTATAATGTTATTGTTACGGCTCATGCTTTTGTAATAATTTTTTTTATAGTTATGCCTATTTTAATTGGGGGTTTTGGAAATTGGCTGATTCCACTAATACTAGGAGCTCCGGATATAGCTTTCCCTCGTATAAATAATTTGAGATTTTGGCTTTTACCCCCTTCTTTATTATTACTGTTTATTTCAAGCATAGATGAGATAGGAGTGGGGGCGGGATGAACGGTTTACCCCCCTCTTGCCTCTTTAGAGGGACATTCTGGTAGTTCAGTAGATTTTGCTATTTTTTCTTTACACTTAGCTGGAGCGTCTTCTATTATAGGGGCTATTAATTTTATTTCCACAATTTTGAATATACGGGGTTATGGAATATCTATAGAAAAAGTACCTTTATTTGTTTGGTCCGTGTTAATTACAGCTGTATTATTATTGTTATCTCTTCCTGTGTTAGCTGGGGCTATCACAATATTACTGACGGATCGTAATTTTAATACTTCATTTTTTGATCCTTGTGGGGGGGGGGATCCTGTTTTGTTTCAA--------- AEE92882/1-657_AEE92882 ACGTTATATTTTGTTTTTGGAGCTTGATCTGCTATGGTAGGGACCGGAATAAGAGTAATTATTCGGTCTGAGTTGGGGCAAGTGGGGAGATTGTTGGGTGATGATCATATATATAATGTTATTGTAACTGCTCATGCTTTAGTAATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTACTGCCTTTAATAGTAGGAGCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCACCTTCTTTATTTTTGTTGGTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTTGGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGGGCGATTAATTTTATTACCACTATTATTAATATGCGTACAAATGGTATAACTATGGAGCGTGTGCCGTTGTTTGTGTGATCAGTATTAGTGACTGCTATTTTGTTATTATTGTCTTTACCAGTATTGGCGGGGGCTATTACGATATTACTAACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAGCATTTATTT ADW58691/1-657_ADW58691 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAATTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTTATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGTGCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTATTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATAGTTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTAGGTCATATGGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGAGCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTTGTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAACATTTATTT ADW58631/1-657_ADW58631 ACTTTATATTTAATATTTGGAGCTTGATCTGCTATAGTAGGGACTGCTATAAGAGTGTTAATTCGAATAGAATTAGGTCAATCTGGAAGACTTTTAGGTGATGATCATTTATATAATGTTGTAGTTACTGCACATGCTTTTGTTATAATTTTTTTTATAGTTATACCTATTTTGATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAGGTGCTCCTGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTACTACCTCCTTCTTTATTTTTATTATTTATTTCTTCTATAGCTGAAATAGGAGTTGGAGCAGGATGAACAGTTTATCCTCCATTGGCATCTAGTGTAGGTCATATAGGAAGTGCAATAGATTTTGCTATTTTTTCATTACATTTGGCTGGTGCTTCTTCTATTATAGGAGCAGTAAATTTTATTACTACTATTATTAATATACGTTCTCATGGAATAAGAATAGAAAAAGTTCCTTTATTTGTTTGATCAGTTTTAATTACAGCTATTTTGTTGTTATTATCTTTACCTGTTTTAGCAGGTGCTATTACTATATTATTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCTGCTGGAGGAGGAGATCCTATTTTATTTCAACATTTATTT ACM89220/1-657_ACM89220 ACTTTATATTTTTTATTTGGTACTTGATCAGCAATAATTGGTACAGCAATAAGTGTTTTAATTCGTGTTGAACTAGGATTTTCTGGAAGATTTTTAGGTGATGATCATTTATATAATGTAATTGTTACTGCTCATGCTTTTATTATAATTTTTTTTATAGTTATACCTATTTTAATTGGTGGTTTTGGAAATTGGTTAGTTCCTTTAATATTAAGAGCTCCAGATATAGCTTTTCCTCGTATAAATAATTTAAGATTTTGGTTACTACCTCCTTCGTTATTATTGTTATTTATTTCTTCTATGGTTGAAATCGGAGTTGGAGCAGGGTGGACTATTTATCCTCCTTTATCTTCTTCTGTGGGTCATTCTGGTGCATCTATGGATTTTGCAATTTTTTCTCTTCATTTAGCTGGTGCTTCTTCTATTATAGGTGCTATTAATTTTATTTCAACAATTATTAATATACGACCTTATGGTATAAGAATAGAAAAGATTCCTTTATTTGTATGATCTGTATTAATTACAGCTGTCTTATTATTATTATCATTACCAGTATTAGCTGGGGCTATTACTATACTTTTAACTGATCGTAATTTTAATACTTCTTTTTTTGATCCAGCTGGGGGTGGGGATCCAATTTTATTTCAGCATTTATTT AEE92867/1-642_AEE92867 ---------------TTTGGGGCTTGATCTGCTATGGTAGGTACCGGAATAAGAGTAATTATTCGGTCTGAGTTGGGGCAAGTGGGAAGATTATTAGGTGATGATCATATATATAATGTTATGGTTACTGCTCATGCTTTAGTAATGATTTTTTTTATGGTAATGCCAATCATGATTGGAGGTTTTGGTAATTGATTATTGCCTTTAATGGTAGGAGCTCCTGATATGGCTTTTCCTCGTATAAATAATTTGAGTTTTTGATTGCTTCCTCCTTCTTTATTTTTGTTGGTGTTGTCTTCTTTAACAGATGTTGGGGTAGGGGCTGGTTGAACTATTTATCCTCCTTTGTCTTCGGGAGTTGGGCATGGAGGTGGGGGTATGGATTTTGCTATTTTTTCTTTGCATTTAGCTGGGGCTTCTTCTATTATGGGGGCGATTAATTTTATTACTACTATTATTAATATGCGTACAAATGGTATGACTATGGAGCGTGTGCCGTTGTTTGTGTGATCAGTATTAGTGACTGCTATTTTGTTATTGTTGTCTTTGCCAGTATTGGCGGGGGCTATTACAATATTATTGACAGATCGTAATTTTAATACATCTTTTTTTGATCCTGCTGGAGGAGGGGATCCTGTTCTGTTTCAACATTTATTT ADH12119/1-645_ADH12119 ACTTTATACTTGGTTTTTGGTGCTTGAGCGGCTATGGTTGGAACTGCAATAAGTGTTTTAATTCGAATTGAGTTGGGGCAATCTGGTAGATTTATGGGAGATGATCAGTTGTATAATGTTATTGTAACTGCTCATGCTTTTGTTATAATTTTTTTTATGGTTATGCCTATTTTGATTGGGGGCTTTGGTAATTGACTGGTTCCTTTGATGTTGGGGGCTCCTGATATGGCTTTTCCTCGCATGAATAATTTAAGGTTTTGATTATTGCCTCCTTCTTTATTTTTATTATTTATTTCTTCTATGGTGGAAATAGGGGTTGGGGCTGGTTGAACGATCTACCCTCCTTTAGCGTCTCTAGAAGGACATTCAGGAAGTTCGGTTGATTTTGCCATTTTTTCTTTGCATTTGGCTGGGGCCTCTTCTATTATAGGGGCTATTAATTTTATTTCTACAATTTTGAATATACGGTCTTATGGGATGTCTATGGAAAAAGTTCCTTTGTTTGTTTGGTCGGTTTTAATTACTGCTGTTTTGCTCCTATTATCACTTCCGGTTTTAGCTGGGGCTATCACTATGTTATTAACTGATCGAAATTTTAATACATCGTTTTTTGATCCTTCGGGGGGAGGGGATCCTATTTTTTTT------------ ; end; begin mrbayes; set autoclose=yes; charset Gene1_pos1 = 1-657\3; charset Gene1_pos2 = 2-657\3; charset Gene1_pos3 = 3-657\3; charset p1 =Gene1_pos1; charset p2 =Gene1_pos2; charset p3 =Gene1_pos3; partition current_partition =3:p1, p2, p3; Lset applyto=(1) rates=invgamma nst=6; Lset applyto=(2) rates=gamma nst=6; Lset applyto=(3) rates=gamma nst=2; link Brlens=(all); unlink statefreq=(all); unlink shape=(all); link topology=(all); end; 2013-02-05 15:57:07.212 UTC Input file for MrBayes in nexus format both data and model using mbayes dialect 2013-02-05 15:56:42.208 UTC branchModelChoice Are the branch lengths across partition assumed to be equal in the model by the user? 2 possible value: "linked" or "unliked" 2013-02-05 15:58:18.340 UTC "linked" 2013-02-05 15:58:27.687 UTC Call_PartitionFinderName0Argument0Output_Path11Stadardouput22net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeServiceNamevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity PartitionFinder net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUploadMSAfileFile_name0InputBody0REST_Service_redirection00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeUploadConfigFileFile_name0InputBody0REST_Service_redirection00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcatenate_two_stringsstring10string20output00net.sf.taverna.t2.activitieslocalworker-activity1.4net.sf.taverna.t2.activities.localworker.LocalworkerActivity string1 0 'text/plain' java.lang.String true string2 0 'text/plain' java.lang.String true output 0 0 workflow org.embl.ebi.escience.scuflworkers.java.StringConcat UserNameHere 2013-01-30 10:36:22.209 UTC net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFile_name_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity partition_finder.cfg net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFile_name_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity test.phy net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeModelsetGUIGenePartition0BL11PartitionDef00Test22net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMrBayesParserBL0PartDef0PartFinder0MSAphy0nGen0nRun0MrBayesBlock00net.sf.taverna.t2.activitiesexternal-tool-activity1.4net.sf.taverna.t2.activities.externaltool.ExternalToolActivity 789663B8-DA91-428A-9F7D-B3F3DA185FD4 default local <?xml version="1.0" encoding="UTF-8"?> <localInvocation><shellPrefix>/bin/sh -c</shellPrefix><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand></localInvocation> 8736e2c3-d3eb-4fa2-957e-0f48330eab36 python PartitionParser.py PartDef PartFinder %%BL%% MSAphy %%nGen%% %%nRun%% 1200 1800 BL nGen nRun PartitionParser.py true false false MacRoman false def phy2mrbayes(phy, DNA=True): A=open(phy,"r").readlines() ntaxa, nseq=A[0].split() A=[x.split()[0].replace("/","_").replace("-","_")+" "+x.split()[1]+"\n" for x in A[1:]] phylip="phylip format requires that first line includes only two integers" assert int(ntaxa), phylip assert int(nseq), phylip assert DNA, "program assume sequence are nucleotides" header= '#Nexus\n\nbegin data;\ndimensions ntax={ntaxa} nchar={nseq};\nformat datatype=dna interleave=no gap=- missing=? Matchchar=.;\nmatrix\n'.format(ntaxa=ntaxa,nseq=nseq) footer=";\nend;\n" return header+"".join(A)+footer def PartitionFinder2MrBayes(PartDef, PartFinder, brlink, ngen, nrun ): matrix={"JC":1, "F81":"1", "K80":"2", "HKY":"2", "SYM":"6", "GTR":"6"} SS={"+I":"inv","+G":"gamma","+I+G":"invgamma"} pi={"JC":"equal", "F81":"Dirichlet(1.0,1.0,1.0,1.0)", "K80":"equal", "HKY":"Dirichlet(1.0,1.0,1.0,1.0)", "SYM":"equal", "GTR":"Dirichlet(1.0,1.0,1.0,1.0)"} footer="unlink statefreq=(all);\nunlink shape=(all);\nlink topology=(all);\nmcmcp ngen="+ngen+ " samplefreq=100 nchains=16 temp=0.200000 nruns="+nrun+";\nmcmc;\nquit;\nend;\n" header="begin mrbayes;\nset autoclose=yes;\n\n" Part=open(PartDef,"r").readlines() Part=["charset "+i for i in Part] flag=False #Subsets={} char="" mod="" for i in open(PartFinder,"r"): line=i.split() if len(line)==0: continue #print(line) if flag: l=[j.strip() for j in i.split("|")] if len(l)==1: break npartition=int(l[0]) Model=l[1] M=matrix[Model[:Model.find("+")]] ss=SS[Model[Model.find("+"):]] #Subsets[line[0]]={model:line[1],sets:line[2]} char+="charset p"+l[0]+" ="+l[2]+";\n" mod+="Lset applyto=("+l[0]+") rates="+ss+" nst="+M+";\n" elif line[0]=="Subset": flag=True BL="unlink Brlens=(all);\n" if flag: char+="partition current_partition ="+str(npartition)+":"+", ".join(["p"+str(i+1) for i in range(npartition)])+";\n" char+="set partition = current_partition;\n" if brlink=="linked": BL="link Brlens=(all);\n" return header+"".join(Part)+"\n"+char+mod+BL+footer if "__main__"==__name__: import sys temp=PartitionFinder2MrBayes(sys.argv[1],sys.argv[2],sys.argv[3], sys.argv[5], sys.argv[6]) temp1=phy2mrbayes(sys.argv[4]) handle=open("MrBayesBlock","w") handle.write(temp1) handle.write(temp) handle.close() nGen nGen false false false MacRoman false false false PartFinder PartFinder true false false MacRoman false false false MSAphy MSAphy true false false MacRoman false false false nRun nRun false false false MacRoman false false false PartDef PartDef true false false MacRoman false false false BL BL false false false MacRoman false false false MrBayesBlock MrBayesBlock false false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokefasta2phyMSAfasta0MSAphy00net.sf.taverna.t2.activitiesexternal-tool-activity1.4net.sf.taverna.t2.activities.externaltool.ExternalToolActivity 789663B8-DA91-428A-9F7D-B3F3DA185FD4 default local <?xml version="1.0" encoding="UTF-8"?> <localInvocation><shellPrefix>/bin/sh -c</shellPrefix><linkCommand>/bin/ln -s %%PATH_TO_ORIGINAL%% %%TARGET_NAME%%</linkCommand></localInvocation> c8c06e00-9f5a-464d-9e4e-9deb4eab8f4d python Fasta2Phy.py MSAfasta 1200 1800 Fasta2Phy.py true false false MacRoman false def Fasta2Phy(MSAfasta): msa=open(MSAfasta,"r").readlines() msa="\n".join([i[:-1] for i in msa]) records=[(i[:i.find("\n")].replace(" ","_"),i[i.find("\n"):].replace("\n","").strip()) for i in msa.split(">")[1:]] ntaxa=len(records) nseq=len(records[0][1]) assert any([len(i[1])==nseq for i in records]), "all records should have same length" body="\n".join([i[0]+" "+i[1] for i in records]) return " ".join(map(str,(ntaxa,nseq)))+"\n"+body+"\n" if "__main__"==__name__: import sys out=Fasta2Phy(sys.argv[1]) handle=open("MSAphy","w") handle.write(out) handle.close() MSAfasta MSAfasta true false false MacRoman false false false MSAphy MSAphy false false true true 0 false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeask_NGenmessage0title0answer00net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 ask VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeask_NRunmessage0answer00net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity message 0 java.lang.String true title 0 java.lang.String true answer 0 0 ask VelocityTemplate false net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Number of Generation to be used in MCMCMC intergration with MrBayes [An integer i.e 100000] net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoketitle_valuevalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Number of Generation net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokemessage_value_1value00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Number of independent Runs ( at least 2) [an integer] net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeCall_PartitionFinderNameServiceNamevalueCall_PartitionFinderArgumentConcatenate_two_stringsoutputUploadMSAfileFile_nameFile_name_value_1valueUploadMSAfileInputBodyfasta2phyMSAphyUploadConfigFileFile_nameFile_name_valuevalueUploadConfigFileInputBodyModelsetGUITestConcatenate_two_stringsstring1UploadMSAfileREST_Service_redirectionConcatenate_two_stringsstring2UploadConfigFileREST_Service_redirectionModelsetGUIGenePartitionPossiblePartitionMrBayesParserBLModelsetGUIBLMrBayesParserPartDefModelsetGUIPartitionDefMrBayesParserPartFinderCall_PartitionFinderStadardouputMrBayesParserMSAphyfasta2phyMSAphyMrBayesParsernGenask_NGenanswerMrBayesParsernRunask_NRunanswerfasta2phyMSAfastaMSA_fastaask_NGenmessagemessage_valuevalueask_NGentitletitle_valuevalueask_NRunmessagemessage_value_1valuePathCall_PartitionFinderOutput_PathPartitionFinderOuputCall_PartitionFinderStadardouputMrBayesInputMrBayesParserMrBayesBlockbranchModelChoiceModelsetGUIBL 80768ac7-2051-474c-b6ca-84b3db44164e 2013-01-30 13:45:25.256 UTC 625baf1c-821f-44df-9ce4-63f172c0f7ee 2013-01-30 16:08:31.899 UTC 1d19ca77-9351-4595-ab58-24ab59ff26c0 2013-01-30 16:23:36.508 UTC c87599a9-53f3-4f71-aa9d-a52fa46d6150 2013-02-18 17:28:31.184 UTC 6b59ee47-001c-487b-bad5-5496aef788fc 2013-01-30 11:14:31.315 UTC 878abc7e-b91f-411b-86fc-f586a420a7fa 2013-02-08 16:05:33.86 UTC 2ed8c1a7-e451-469a-a46a-11239145da5a 2013-02-05 15:45:49.815 UTC 73e0f222-ba61-4c33-b351-37ec2004695f 2013-02-05 14:03:46.335 UTC 6d66ed79-a12a-4241-b18b-c498a7d2da07 2013-02-01 14:57:44.153 UTC Selecting Evolutionary Model for a phylogenetic inference using partitionFinder program 2013-02-05 15:59:05.888 UTC saverio vicario giacinto donvito 2013-02-01 14:55:26.151 UTC 863e00c4-6cc6-4979-9acd-f720b98d7c86 2013-02-05 13:30:10.377 UTC 86d5f93b-05de-4202-90f0-ec91a695cff4 2013-02-05 16:02:05.335 UTC 45591344-1d68-4777-aef1-e3dc645624b5 2013-02-05 10:43:14.770 UTC Selecting Evolutionary Model for a phylogenetic inference using partitionFinder program. The program (http://www.robertlanfear.com/partitionfinder/) search best candidate model that satisfy need of the different partition. The program do not explore all possible model that could be implemented in mrbayes, in fact it do not allow for link of subsitution matrix but different base frequency across partitions, or to link branch lenght across some partitions but not all. For a greater fine tuning of model the user is advised to use the GUI interface present in the phylogenetic inference pipeline 2013-02-05 16:02:01.665 UTC 7597c8f7-80d3-4b3b-a269-1e09797498e2 2013-02-05 14:44:06.990 UTC 6a29d91a-01d6-4f61-b437-fb66453b7f8c 2013-01-30 16:22:17.814 UTC d80548e2-8a32-4520-a6a0-429ef1db1244 2013-01-30 16:14:06.707 UTC b11ccf00-aa73-48b0-927b-8d4ab1d845cf 2013-01-30 10:15:32.989 UTC d4627728-1123-443c-ae77-a80f54648782 2013-02-07 15:22:17.514 UTC 9e6923d1-a6aa-43ce-bffb-fa7aee07dff9 2013-02-19 10:42:25.870 UTC c610171a-5757-4944-acc2-fb83323cffbd 2013-01-30 10:34:01.370 UTC 6cfda8b0-06aa-4e11-a0ff-5c12e525d978 2013-02-05 09:13:41.823 UTC 777979a6-ecf0-48a8-a328-7bffd3efdb8c 2013-02-07 16:19:51.911 UTC 28c91d66-2c4a-476d-8d78-db869b453921 2013-02-18 22:01:20.399 UTC 866e4caf-7829-437c-b6a7-dcf0a48cd588 2013-02-07 16:17:46.706 UTC aacc5e27-15e1-4f78-be93-da93151f35d2 2013-02-18 16:03:05.530 UTC 69d2952c-d3b1-4310-97b6-d742626fa971 2013-02-18 15:53:17.645 UTC 69c8c748-98a3-4031-a1c4-e5fa4b09b601 2013-02-05 13:23:51.883 UTC fb26e251-b8e2-44f6-95ee-c90b32dec278 2013-02-18 17:16:29.896 UTC 5cd1547e-b30b-44e2-a6d3-2fe26acf61c4 2013-02-18 18:54:37.560 UTC 0ed7ac93-3ba3-4710-9f47-9639ed7f1641 2013-02-05 15:37:30.903 UTC 622bbc0f-ba1b-4f9f-b8f6-c1296931c721 2013-02-18 17:11:04.467 UTC 0258f22b-486e-4dfb-a718-ab420717d865 2013-01-30 10:36:25.295 UTC 24112111-8abf-4ffa-a503-57a6a1594a09 2013-02-05 15:11:07.370 UTC 8d886d36-113b-49b5-a914-930884e04bb5 2013-02-05 13:36:43.166 UTC 49732954-164b-4bef-b599-d5a14f5da540 2013-02-18 15:11:55.137 UTC aefd0acd-4497-4bfc-b66b-8ba2c230a966 2013-01-30 11:19:45.253 UTC 273e5c0b-5007-4ea5-83f3-6aa9a942a191 2013-02-05 14:13:04.454 UTC e23aad11-3744-4901-830c-4a4b3d646eb7 2013-02-05 07:55:19.124 UTC 784b60fc-f91f-4a16-a624-feb77ace8d10 2013-02-05 08:21:09.643 UTC ece44cfb-3667-4f51-9318-d7e6451319a9 2013-02-18 17:03:00.532 UTC f8f164be-ffd1-4937-b5b4-8c4e1fb3ccf0 2013-01-30 11:17:44.316 UTC f962b042-4d38-4192-a46d-b42669ee1ed6 2013-02-07 15:25:41.898 UTC Workflow14Name00Argument00StatusOutput_PathStadardouputJobIDREST_Servicename0arguments0responseBody00net.sf.taverna.t2.activitiesrest-activity1.4net.sf.taverna.t2.activities.rest.RESTActivity GET http://alicegrid17.ba.infn.it:8080/INFN.Grid.FrontEnd/services/QueryJob/InsertJobs?NAME={name}&arguments={arguments} application/xml application/xml String false false false false true arguments java.lang.String name java.lang.String net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_Servicexml_text0nodelist11net.sf.taverna.t2.activitiesxpath-activity1.4net.sf.taverna.t2.activities.xpath.XPathActivity <?xml version="1.0" encoding="UTF-8"?> <Job><Name>blast</Name><Flag>7772590c-d7ab-4b76-98b9-aa293c6c34fe</Flag><JobsID><JobId>454118</JobId></JobsID></Job> /Job/JobsID/JobId net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeRetrivingJobJobID0Status00Output00StandardOutput11net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Loop <activity xmlns="http://taverna.sf.net/2008/xml/t2flow"><raven><group>net.sf.taverna.t2.activities</group><artifact>beanshell-activity</artifact><version>1.3</version></raven><class>net.sf.taverna.t2.activities.beanshell.BeanshellActivity</class><inputMap /><outputMap /><configBean encoding="xstream"><net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean xmlns=""> <inputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> <name>Status</name> <depth>0</depth> <translatedElementType>java.lang.String</translatedElementType> <allowsLiteralValues>true</allowsLiteralValues> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityInputPortDefinitionBean> </inputs> <outputs> <net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> <name>loop</name> <depth>0</depth> <granularDepth>0</granularDepth> </net.sf.taverna.t2.workflowmodel.processor.activity.config.ActivityOutputPortDefinitionBean> </outputs> <classLoaderSharing>workflow</classLoaderSharing> <localDependencies /> <artifactDependencies /> <script>loop = "" + ! Status.equals("done"); if ("true".matches(loop)) { Thread.sleep(2000); }</script> <dependencies /> </net.sf.taverna.t2.activities.beanshell.BeanshellActivityConfigurationBean></configBean><annotations /></activity> true net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeDecodebase64tobyteBase640out00net.sf.taverna.t2.activitiesdataflow-activity1.4net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeREST_ServicenameNameREST_ServiceargumentsArgumentXPath_Servicexml_textREST_ServiceresponseBodyRetrivingJobJobIDXPath_ServicenodelistDecodebase64tobyteBase64RetrivingJobStandardOutputStatusRetrivingJobStatusOutput_PathRetrivingJobOutputStadardouputDecodebase64tobyteoutJobIDXPath_Servicenodelist 8b01e940-a672-4444-aa4c-ae78e228e67d 2012-04-02 15:51:30.599 UTC 4afab38a-1fec-43b4-8a32-83eaa59e8b8d 2011-11-30 15:53:41.975 UTC 14b1b68a-998f-45f6-832f-ac4f26dcac21 2012-04-05 09:40:59.398 UTC 576ddacc-c8be-437b-afb7-6dfe3059fb77 2012-05-03 13:12:35.270 UTC 8a70d234-45be-42bd-8bff-039af9b1c962 2011-11-30 16:26:18.954 UTC b19f4286-6433-4018-9f4b-1f1befc8469a 2012-05-03 07:48:58.308 UTC 36001f84-a643-4173-80ee-118a0ceaecbc 2011-11-30 17:10:08.264 UTC bda5ff28-ff17-4ff2-9191-13acd55b73f3 2011-11-30 17:07:35.484 UTC 0b2a7cd3-3853-434d-b462-4a2d7796ea7d 2011-11-30 15:48:49.960 UTC a2b6b247-c946-4883-8d6d-469ea6573f93 2011-11-30 15:51:07.192 UTC be8cd221-9345-4c91-9fb4-b413978b0a6a 2011-11-30 16:05:00.470 UTC 2bb836b5-2738-4f3f-864d-5a77e76bdd1f 2011-11-30 17:09:13.282 UTC eb0a0648-1196-4215-b698-acb8729bf045 2011-11-30 15:47:24.13 UTC dcf6d338-d587-4aa3-9541-b54bc9799d93 2012-05-03 13:14:12.544 UTC 0db568c0-c7de-4f44-972f-969fd3006341 2012-12-19 14:19:10.457 UTC bcc60618-7449-4965-b39d-d0d6d90ec7db 2011-11-30 15:49:46.56 UTC 15c52e11-e32b-46b2-857c-89226396dc45 2011-11-30 15:41:58.998 UTC 5f07e956-6857-4261-ae1e-1ab5ba32ab08 2011-11-30 16:07:05.176 UTC 6f3b0def-88bb-46b3-926c-34a82e94e0cf 2013-01-30 16:21:00.780 UTC a65689de-3539-4833-9e3e-c32aa9237d39 2011-11-30 15:52:17.202 UTC 4cc9395d-b178-451b-aef7-a34678d0d490 2011-11-30 15:51:55.76 UTC 25d638c9-672c-498e-913b-4bceb4230f8e 2011-11-30 17:10:59.924 UTC 97c8a203-1938-4e3f-90f3-87694c3a795a 2011-11-30 15:59:45.57 UTC 3c9f8d96-0c37-4a18-8214-289acc1482fb 2011-11-30 16:02:25.713 UTC 3b87511d-904e-4ec7-950d-2c9a6ea35734 2013-01-30 16:13:23.473 UTC 857db6d7-3775-4738-bf94-5c6a78c1fb8b 2011-11-30 16:00:08.58 UTC c10777b3-6ac8-4d90-826e-bf0a7325e9ee 2012-04-02 15:49:23.545 UTC 9ea02975-9bbf-4aee-b585-ee92896d3d88 2012-05-03 15:25:26.968 UTC e2682dca-1389-49ad-a886-491fa918d268 2011-11-30 15:54:01.684 UTC 3aba8bc3-36ee-473d-a504-288a1f9998df 2011-11-30 16:07:49.591 UTC 28f1caea-d426-4ba2-8cef-3fc9263e63b1 2012-04-30 16:08:07.938 UTC 7ccedf13-5087-4f13-b18e-8b1a4571827e 2013-01-30 16:18:54.540 UTC b9cf606e-166f-471c-b51e-d2f517526ad1 2011-11-30 17:00:56.590 UTC 10707355-ef1c-40d5-b452-6c9d0218e405 2012-04-05 09:28:04.523 UTC Workflow1URL00OutputFullyInteractiondestination0net.sf.taverna.t2.activitiesinteraction-activity1.0.0net.sf.taverna.t2.activities.interaction.InteractionActivity destination 0 text/plain java.lang.String false http://www.mygrid.org.uk/taverna/internal/biovel/open_url.html LocallyPresentedHtml true net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeString_constantvalue00net.sf.taverna.t2.activitiesstringconstant-activity1.4net.sf.taverna.t2.activities.stringconstant.StringConstantActivity Dummy net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize 1 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry 1.0 1000 5000 0 net.sf.taverna.t2.coreworkflowmodel-impl1.4net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInteractiondestinationURLOutputFullyString_constantvalue e67a37fd-4c95-4b40-a88e-c4c1903f2f80 2012-05-04 20:12:04.919 UTC 11f188b9-1ba3-478c-a8af-73369e0b7750 2012-05-04 20:21:24.403 UTC 8ba75a8c-c9e1-4939-a604-f832383af079 2012-05-04 20:12:33.214 UTC b584c1ec-b882-4136-a800-b3532cfab19b 2012-05-10 07:45:04.851 UTC 55542b17-acee-4db7-91d0-f98393aa66f3 2012-05-04 22:48:22.640 UTC