Workflow Entry: Retrieve_abstract_from_Medline

Created at: 17/09/08 @ 15:22:56 Last updated: 17/09/08 @ 15:24:22

Version 1 (of 1)

Version created on: 17/09/08 @ 15:22:56 by: Franck Tanoh | Revision comments Expand

Last edited on: 17/09/08 @ 15:24:22 by: Franck Tanoh

Title: Retrieve_abstract_from_Medline

Type: Taverna 1

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Description

This workflow retrieves Medline Abstracts given PMIDs (PubMed id)

You can use: 9879 as input example to test this workflow

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Option 1:

Launch in Taverna

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/394/download?version=1
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Workflow Components

Inputs (1)

Name	Description
PubMed_id

Processors (4)

Name	Type	Description
queryPmid	arbitrarywsdl
InputParameters	local
Outputparameters	local
PipelineName	stringconstant	possible values: whatizitSwissprotG2; whatizitChebiDict; whatizitOscars3; whatizitPathwaywiki; whatizitEBIMed; whatizitProteinInteraction; whatizitGORanked; whatizitProteinBiolexHuman; whatizitDisease; whatizitOrganisms; whatizitQbmarsdf; whatizitEBIMedDiseaseChemicals; whatizitSwissprotGo; whatizitChemicalsMeta; whatizitGODict; whatizitProteinInteractionPMID; whatizitChemicals; whatizitSwissprotDisease; whatizitDrugs; whatizitSwissprot.

Outputs (1)

Name	Description
MedlineAbstract

Links (5)

Sink	Source
queryPmid:parameters	InputParameters:output
InputParameters:pmid	PubMed_id
InputParameters:pipelineName	PipelineName:value
MedlineAbstract	Outputparameters:return
Outputparameters:input	queryPmid:parameters