Microbial Metagenomic Trait Calculation and Statistical Analysis Workflow

Created: 2014-10-03 18:55:22      Last updated: 2015-06-12 13:39:16

This workflow calculates the microbial traits of your metagenome and retrieves additional traits data from the Microbial Metagenomic Trait Database http://mb3is.megx.net/mg-traits.

The list of traits:

- GC content - Variance of GC content - Dinucleotides - Number of rRNA - Codon usage - Amino acid composition - Acidic to basic amino acids ratio - % of Transcriptional factors - % of classified reads - Functional content - Functional diversity - Taxonomic content - Taxonomic diversity

As described in Barberan et al. 2012 (http://dx.doi.org/10.1111/j.1365-294X.2011.05383.x)

Furhter documentation: https://wiki.biovel.eu/display/doc/Metagenomic+Workflows

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