Workflow Entry: Transform XML - output file by extension

Created at: 27/09/08 @ 17:36:43
Information Version 1 (of 1)

Version created on: 27/09/08 @ 17:36:43 by: Alan Williams   |   Revision comments Expand

Last edited on: 27/09/08 @ 17:36:44 by: Alan Williams

Title: Transform XML - output file by extension

Type: Taverna 1


Information Preview

(Click on the image to get the full size)

Medium


Information Description

The get_xml_file_from_web service downloads an example xml from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xml_file. The path to the temporary file is passed to the inFileURL port of Transform_XML.

The get_xslt_file_from_web service downloads an example xslt file from myExperiment. The content of that file is then saved to a temporary file by create_and_populate_xslt_file. The path to the temporary file is passed to the xslFileURL port of Transform_XML.

The Transform_XML service transforms the XML using the specified XSLT and sends the resultant XML document to its outputStr port and so to the workflow's out port. The Transform_XML_service has the default for outputExt set to 'out' so the transformed XML document is also written to the file whose path is the same as that of the inFileURL but with '.out' as the extension.

To check the content of the output file, its file path is calculated by calls of Filter_list_of_strings_extracting_match_to_a_regex and Concatenate_two_strings. The file path is passed to the Read_Text_File service. Once the Transform_XML service has finished, the Read_Text_File service reads the output file and echoes its content to the contents_of_output_file port of the workflow.


Information Download



Information Run

Run this Workflow in the Taverna Workbench...

Option 1:

Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/482/download?version=1
[ More InfoExpand ]


Information Workflow Components

Inputs (0)
Processors (8)
Beanshells (2)
Outputs (2)
Links (9)
Coordinations (1)

Information Workflow Type

Taverna 1

Information Original Uploader

Information License

All versions of this Workflow are licensed under:

Information Credits (1)

(People/Groups)

Information Attributions (0)

(Workflows/Files)

None

Information Tags (3)

Log in to add Tags

Information Shared with Groups (1)

Information Featured In Packs (1)

Log in to add to one of your Packs

Information Ratings (0)

Current:

0.0 / 5

(0 ratings)

Log in to rate and see breakdown of ratings

Information Attributed By (0)

(Workflows/Files)

None

Information Favourited By (0)

No one

 

Citations (0)

None


Version History

Earliest Version:
[1] - Transform XML - output file by extension

Created on: Saturday 27 September 2008 @ 17:36:43 (GMT)

Created by: Alan Williams

Last edited on: Saturday 27 September 2008 @ 17:36:44 (GMT)

Last edited by: Alan Williams

Revision comments:

None

This Workflow only has one version.



Reviews Reviews (0)

No reviews yet

Be the first to review!



Comments Comments (0)

No comments yet

Log in to make a comment




Workflow Other workflows that use similar services (0)

There are no workflows in myExperiment that use similar services to this Workflow.

What is this?

Linked Data

Non-Information Resource URI: http://www.myexperiment.org/workflows/482


Alternative Formats

HTML
RDF
XML

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3