Workflow Entry: Multi sequences NCBI BLAST

Created at: 05/12/08 @ 02:57:22

Version 1 (of 1)

Version created on: 05/12/08 @ 02:57:22 by: Whybiocc | Revision comments Expand

Title: Multi sequences NCBI BLAST

Type: Taverna 1

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Description

Run a BLAST analysis using the EBI's WSNCBIBlast service (see http://www.ebi.ac.uk/Tools/webservices/services/ncbiblast). This workflow wraps the EBI_NCBI_BLAST workflow to provide a basic user interface which prompts for the required inputs: sequence file, database, BLAST program and user e-mail. Other parameters (e.g. matrix, sort, gap penalties, etc.) are allowed to default.

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Option 1:

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Note: you need to have both the WHIP Launcher and the Taverna myExperiment/WHIP plugin installed on your machine for this to work. See here for information.

Option 2:

Copy and paste this link into File > 'Open workflow location...'
http://www.myexperiment.org/workflows/593/download?version=1
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Workflow Components

Inputs (1)

Name	Description
Sequence_file	Select sequence file of fasta format

Processors (6)

Name	Type	Description
EBI_ncbiblast	workflow
Ask_for_email_address	local	Input your E-mail address
Search_database_list	local	List of database names for select.
Select_database	local	choose database
Blast_program_list	local	List of blast program names for select.
Select_blast_program	local	choose blast program

Beanshells (0)

Outputs (2)

Name	Description
Hit_id_list
Blast_result	text format result

Links (8)

Sink	Source
EBI_ncbiblast:Email	Ask_for_email_address:answer
Select_blast_program:valueList	Blast_program_list:split
Hit_id_list	EBI_ncbiblast:Hit_id_list
Blast_result	EBI_ncbiblast:Text_result
Select_database:valueList	Search_database_list:split
EBI_ncbiblast:BLAST_program	Select_blast_program:answer
EBI_ncbiblast:Search_database	Select_database:answer
EBI_ncbiblast:Sequence	Sequence_file