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<!--WARNING: Do not change anything inside this workflow file. BioExtract won't recognize your changes, or may even refuse to import it. Instead, modify the workflow in BioExtract after importing. This workflow file can be imported into BioExtract only.-->
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<s:workflowdescription description="Bootstrapped sequences algorithm reads in a data set, and produces multiple data sets from it by bootstrap resampling. http://pro.genomics.purdue.edu/cgi-bin/emboss/help/fseqboot" author="guest guest" uid="B5F8B1F4-7771-2E6E-87EE-DD08D2F50194" title="Phylogeny Bootstrapped Algorithm"/>
<s:processor name="query"><s:stringconstant>NCBI Core Nucleotide:19 AND Definition=cadherin AND Definition=gallus</s:stringconstant></s:processor><s:processor name="Blastn"><s:description>"Nucleotide BLAST: Search nucleotide databases using a nucleotide query"</s:description><s:helpurl>"http://www.ncbi.nlm.nih.gov/BLAST/blastcgihelp.shtml"</s:helpurl><s:parameter name="Select database" value="nr"/><s:parameter name="Limit to the following organism" value="All organisms"/><s:parameter name="Expect" value="10"/><s:parameter name="Word size" value="w_11"/><s:parameter name="Filter: Low-complexity" value="checkbox-on"/><s:parameter name="Filter: Human repeats" value="checkbox-on"/><s:parameter name="Filter: Mask for lookup table only" value="checkbox-on"/><s:parameter name="Number of descriptions" value="d_10"/><s:parameter name="Number of alignments" value="a_10"/><s:parameter name="maximum number of sequences" value="10"/></s:processor><s:processor name="Xmknr"><s:description>"Reads multiple sequence records in FASTA format and removes duplicates"</s:description><s:helpurl>"http://www.vmatch.de/"</s:helpurl><s:parameter name="Sequence type (protein or DNA)" value="dna"/><s:parameter name="Minimum sequence length to include" value="1"/><s:parameter name="xdrop value for edit distance" value="2"/><s:parameter name="Small cluster value" value="90"/><s:parameter name="Large cluster value" value="90"/></s:processor><s:processor name="fseqboot"><s:description>"Bootstrapped sequences algorithm"</s:description><s:soaplabwsdl>http://www.ebi.ac.uk/soaplab/services/phylogeny_molecular_sequence.fseqboot</s:soaplabwsdl><s:helpurl>"http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/fseqboot.html"</s:helpurl><s:parameter name="test" value="b"/><s:parameter name="fracsample" value="100.0"/><s:parameter name="rewriteformat" value="p"/><s:parameter name="seqtype" value="d"/><s:parameter name="blocksize" value="1"/><s:parameter name="reps" value="100"/><s:parameter name="justweights" value="d"/><s:parameter name="seed" value="1"/><s:parameter name="snucleotide_sequence" value="checkbox-on"/></s:processor><s:processor name="Dnadist"><s:description>"DNADIST: Embossified program to compute distance matrix from nucleotide sequences"</s:description><s:helpurl>"http://humpback.bii.a-star.edu.sg/cgi-bin/emboss/emboss.pl?_action=manual&_app=dnadist"</s:helpurl><s:parameter name="Distance method to use" value="Kimura"/><s:parameter name="Transition/transversion ratio" value="2.0"/><s:parameter name="Use empirical base frequencies" value="checkbox-on"/><s:parameter name="Frequency for A" value="0.25"/><s:parameter name="Frequency for G" value="0.25"/><s:parameter name="# of categories of substitution rates" value="1"/><s:parameter name="Form of distance matrix" value="S"/></s:processor><s:processor name="fneighbor"><s:description>"Phylogenies from distance matrix by N-J or                  UPGMA method"</s:description><s:soaplabwsdl>http://www.ebi.ac.uk/soaplab/services/phylogeny_distance_matrix.fneighbor</s:soaplabwsdl><s:helpurl>"http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/fneighbor.html"</s:helpurl><s:parameter name="matrixtype" value="s"/><s:parameter name="treetype" value="n"/><s:parameter name="outgrno" value="0"/><s:parameter name="seed" value="1"/></s:processor><s:processor name="fconsense"><s:description>"Majority-rule and strict consensus tree"</s:description><s:soaplabwsdl>http://www.ebi.ac.uk/soaplab/services/phylogeny_consensus.fconsense</s:soaplabwsdl><s:helpurl>"http://emboss.sourceforge.net/apps/release/4.1/emboss/apps/fconsense.html"</s:helpurl><s:parameter name="method" value="mre"/><s:parameter name="mlfrac" value="0.5"/><s:parameter name="outgrno" value="0"/></s:processor><s:link source="query:value" sink="Blastn:sequence_usa" />
<s:link source="Blastn:outseq" sink="Xmknr:sequences_direct_data" />
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<s:sink name="Xmknr">
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