This workflow gets a series of information relating to a list of KEGG genes supplied to it. It also removes any null values from a list of strings.
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org.embl.ebi.escience.scuflworkers.java.StringListMerge
org.embl.ebi.escience.scuflworkers.java.StringListMerge
org.embl.ebi.escience.scuflworkers.java.StringListMerge
org.embl.ebi.escience.scuflworkers.java.StringStripDuplicates
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
http://soap.genome.jp/KEGG.wsdl
btit
http://soap.genome.jp/KEGG.wsdl
get_pathways_by_genes
http://soap.genome.jp/KEGG.wsdl
btit
String[] split = input.split("\n");
Vector nonEmpty = new Vector();
for (int i = 0; i < split.length; i++){
if (!(split[i].equals("")))
{
nonEmpty.add(split[i].trim());
}
}
String[] non_empty = new String[nonEmpty.size()];
for (int i = 0; i < non_empty.length; i ++)
{
non_empty[i] = nonEmpty.elementAt(i);
}
String output = "";
for (int i = 0; i < non_empty.length; i++)
{
output = output + (String) (non_empty[i] + "\n");
}
input
output
String[] split = input.split("\n");
Vector nonEmpty = new Vector();
for (int i = 0; i < split.length; i++){
if (!(split[i].equals("")))
{
nonEmpty.add(split[i].trim());
}
}
String[] non_empty = new String[nonEmpty.size()];
for (int i = 0; i < non_empty.length; i ++)
{
non_empty[i] = nonEmpty.elementAt(i);
}
String output = "";
for (int i = 0; i < non_empty.length; i++)
{
output = output + (String) (non_empty[i] + "\n");
}
input
output
String[] split = input.split("\n");
Vector nonEmpty = new Vector();
for (int i = 0; i < split.length; i++)
{
String trimmed = split[i].trim();
nonEmpty.add(trimmed);
}
String output = "";
for (int i = 0; i < nonEmpty.size(); i++)
{
output = output + "ncbi-gi:" + (String) (nonEmpty.elementAt(i) + "\n");
}
input
output
String[] split = input.split("\n");
Vector nonEmpty = new Vector();
for (int i = 0; i < split.length; i++)
{
String trimmed = split[i].trim();
String[] trimmedSplit = trimmed.split("\t");
if (trimmedSplit.length > 2)
{
nonEmpty.add(trimmedSplit[1].trim());
}
}
String output = "";
for (int i = 0; i < nonEmpty.size(); i++)
{
output = output + (String) (nonEmpty.elementAt(i) + "\n");
}
input
output
http://soap.genome.jp/KEGG.wsdl
bconv