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InviteWorkflow Entry: EBI_InterProScan for Taverna 2
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 Version 1 (earliest)
(of 2)
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Version created on:
03/07/09 @ 13:59:27
by:
Stian Soiland-Reyes
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Revision comments 
Last edited on: 03/07/09 @ 14:00:55 by: Stian Soiland-Reyes
Title: EBI InterproScan (T2, looping)
Type: Taverna 2
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Description
Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default.
InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the signatures are returned, which are annotated with the corresponding InterPro and GO term assignments for these signature matches.
The checkStatus processor has looping enabled, it will continue as long as the status is RUNNING - but with a 250 ms sleep. (done as a customized Beanshell script to add the sleep, avoiding overload of the checkStatus service)
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Workflow Components
Authors (2)
Titles (3)
Descriptions (1)
Workflow Type
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EBI_InterProScan for Taverna 2
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EBI InterproScan T2
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EBI_InterProScan
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EBI InterProScan
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Earliest Version:
[1] - EBI InterproScan (T2, looping)
Latest Version:
[2] - EBI_InterProScan for Taverna 2
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Original Uploader |
Created: 26/01/10 @ 14:46:07 | Last updated: 26/01/10 @ 14:46:08
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License: Creative Commons Attribution-Share Alike 3.0 Unported License
Perform an InterProScan analysis of a protein sequence using the EBI’s WSInterProScan service (see http://www.ebi.ac.uk/Tools/webservices/services/interproscan). The input sequence to use and the user e-mail address are inputs, the other parameters for the analysis (see Job_params) are allowed to default.
InterProScan searches a protein sequence against the protein family and domain signature databases integrated into InterPro (see http://www.ebi.ac.uk/interpro/). A set of matches to the sig...
Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 162 times | Downloaded: 118 times Tags (5): |
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Original Uploader |
Created: 16/11/09 @ 12:37:25
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Attributions:
License: Creative Commons Attribution-Share Alike 3.0 Unported License
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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0 Viewed: 39 times | Downloaded: 0 times Tags (3): |
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Non-Information Resource URI: http://www.myexperiment.org/workflows/820/versions/1
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