This is a workflow to automate multiple BLASTp jobs on a large list of protein sequences in FASTA format.
org.embl.ebi.escience.scuflworkers.java.SplitByRegex
org.embl.ebi.escience.scuflworkers.java.StringConcat
blastp
>
SWISS
Execute Blast
http://xml.nig.ac.jp/wsdl/Blast.wsdl
searchSimple
String fasta = input.substring(1);
input
fasta