Workflow Entry: Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Created at: 14/03/10 @ 21:26:05      Last updated: 23/06/10 @ 20:20:41
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Version created on: 23/06/10 @ 20:20:40 by: Egon Willighagen   |   Revision comments Expand

Title: Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Type: Bioclipse Scripting Language


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Information Description

Queries Bio2RDF for proteins of which the title contains 'HIV', downloads them using the EMBL webservices and opens them in Bioclipse for visualization with Jmol.


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Version History

Earliest Version:
[1] - Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Created on: Sunday 11 October 2009 @ 21:25:58 (GMT)

Created by: Egon Willighagen

Revision comments:

None

Previous Versions:
[2] - Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Created on: Sunday 14 March 2010 @ 21:26:05 (GMT)

Created by: Egon Willighagen

Revision comments:

Version for Bioclipse 2.4. Use version 1 for Bioclipse 2.2.

Latest Version:
[3] - Open PDB entries in Jmol for hits found for HIV in Bio2RDF

Created on: Wednesday 23 June 2010 @ 20:20:40 (GMT)

Created by: Egon Willighagen

Revision comments:

 Updated URI for Bio2RDF SPARQL end point.



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Review Title: Another way to do this

Rating: not yet rated

Created: 11/05/10 @ 00:40:53 | Updated: 11/05/10 @ 00:40:53

Have you tried using the following URL? http://bio2rdf.org/searchns/pdb/HIV Cheers, Peter

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