Workflow119count00
20
2009-11-16 22:10:18.95 EST
50
2009-11-16 22:19:22.865 EST
graph00
http://bio2rdf
2009-11-16 22:19:42.603 EST
sparql_endpoint00
http://localhost:8890/sparql
2009-11-16 22:19:48.551 EST
sparql_query00
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
}
2009-11-17 00:41:05.80 EST
o1o2related_insert_logo3o4citation_insert_logo5Search_Pubmed_linksrelated_article_count0pubmed_bmuri_string0citation_bmuris_string00related_bmuris_string00related_ntriples11ncbi_search_pubmed_link_citation_ntriples11net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInsert_ntriplessparql_endpoint_url0graph0ntriples0sparql_insert_ntriples_log11net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeInsert_ntriples_1sparql_endpoint_url0graph0ntriples0sparql_insert_ntriples_log11net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSPARQL_querygraph0sparql_endpoint0sparql_query0bmuris_string00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSearch_Pubmed_linksrelated_article_countSearch_Pubmed_linkspubmed_bmuri_stringInsert_ntriplessparql_endpoint_urlInsert_ntriplesgraphInsert_ntriplesntriplesInsert_ntriples_1sparql_endpoint_urlInsert_ntriples_1graphInsert_ntriples_1ntriplesSPARQL_querygraphSPARQL_querysparql_endpointSPARQL_querysparql_queryo1o2related_insert_logo3o4citation_insert_logo5
FrancoisBelleau@yahoo.ca
2009-11-16 23:34:45.836 EST
Search for citations and related article in PubMed [myexperiment:pubmed_step2_link]
2009-11-16 23:35:12.286 EST
graph = http://nur77
bmuri =
http://bio2rdf.org/pubmed:18843482
http://bio2rdf.org/pubmed:18466322
http://bio2rdf.org/pubmed:17201484
http://bio2rdf.org/pubmed:14603264
http://bio2rdf.org/pubmed:12629527
2009-11-16 23:37:12.358 EST
Search for citations and related article in PubMed [myexperiment:pubmed_step2_get_link]
2009-11-17 00:47:41.540 EST
FrancoisBelleau@yahoo.ca
2009-11-16 23:35:32.794 EST
Workflow64pubmed_bmuri_string00
bio2rdf
2009-11-16 13:32:10.500 EST
http://bio2rdf.org/pubmed:18472304
2009-11-16 17:56:20.664 EST
related_article_count00
20
2009-11-16 17:42:59.370 EST
related_bmuris_stringo3citation_bmuris_stringncbi_search_pubmed_link_citation_ntripleso2related_ntriplesNCBI_links_from_Pubmedpubmed_bmuri0top_related_count0related_bmuri_list11citation_bmuri_list11related_ntriples_string00ncbi_pubmed2pubmed_citation_ntriples_string00net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
[B
true
inputlist
2
l(l(''))
1
outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
0
concatenated
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List2inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
[B
true
inputlist
2
l(l(''))
1
outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
0
concatenated
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List4inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
[B
true
inputlist
2
l(l(''))
1
outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List5inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
[B
true
inputlist
2
l(l(''))
1
outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
1
split
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeNCBI_links_from_Pubmedpubmed_bmuriNCBI_links_from_Pubmedtop_related_countFlatten_ListinputlistMerge_String_List_to_a_StringstringlistFlatten_List2inputlistMerge_String_List_to_a_String2stringlistFlatten_List4inputlistFlatten_List5inputlistSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexrelated_bmuris_stringo3citation_bmuris_stringncbi_search_pubmed_link_citation_ntripleso2related_ntriples
bio2rdf_subject_fetch_links demo example
2009-11-16 15:48:45.723 EST
FrancoisBelleau@yahoo.ca
2009-11-16 14:10:39.952 EST
bio2rdf
2009-11-16 13:30:00.651 EST
bio2rdf_subject demo example
2009-11-16 14:11:17.703 EST
Workflow2pubmed_bmuri00
18472304
2009-11-16 11:13:06.356 EST
Pubmed URI for which we search citations and related articles.
2009-11-16 13:37:59.97 EST
http://bio2rdf.org/pubmed:18472304
2009-11-16 13:37:14.101 EST
Bio2RDF: Towards a mashup to build bioinformatics knowledge systems
2009-11-16 10:49:14.433 EST
&cmd=neighbor
2009-11-16 11:12:41.143 EST
top_related_count00
20
2009-11-17 00:10:54.484 EST
o1o2citation_bmuri_listncbi_pubmed2pubmed_citation_ntriples_stringrelated_bmuri_listrelated_ntriples_stringBuild_NCBI_ELink_urlpubmed_id0elink_url00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
pubmed_id
0
text/plain
0
elink_url
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_Web_Page_from_URLurl0contents00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
url
0
'text/x-taverna-web-url'
java.lang.String
true
base
0
'text/x-taverna-web-url'
0
contents
0
'text/plain,text/html'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_From_Textxml-text0xpath0nodelistAsXML11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
dom4j:dom4j:1.6
workflow
dom4j
dom4j
1.6
716010169
java.lang.String
true
xpath
0
'text/plain'
java.lang.String
true
xml-text
0
'text/xml'
1
nodelist
1
l('text/plain')
1
nodelistAsXML
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokexpath_LinkSetDbvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
//LinkSetDb
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_List_of_Strings_by_regexstringlist1regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
1
filteredlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeLinkName_pubmed_pubmed_citedinvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
.*<LinkName>pubmed_pubmed_citedin</LinkName>.*
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_From_Text2xml-text0xpath0nodelist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
dom4j:dom4j:1.6
workflow
dom4j
dom4j
1.6
716010169
java.lang.String
true
xpath
0
'text/plain'
java.lang.String
true
xml-text
0
'text/xml'
1
nodelist
1
l('text/plain')
1
nodelistAsXML
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokexpath_Idvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
//Id
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBuild_citation_ntriplespubmed_id_reference0pubmed_id_source0ntriples00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
pubmed_id_source
0
text/plain
java.lang.String
true
pubmed_id_reference
0
text/plain
0
ntriples
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_List_of_Strings_by_regex2stringlist1regex0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
1
filteredlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeLinkName_pubmed_pubmedvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
.*<LinkName>pubmed_pubmed</LinkName>.*
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeXPath_From_Text3xml-text0xpath0nodelist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
dom4j:dom4j:1.6
workflow
dom4j
dom4j
1.6
716010169
java.lang.String
true
xpath
0
'text/plain'
java.lang.String
true
xml-text
0
'text/xml'
1
nodelist
1
l('text/plain')
1
nodelistAsXML
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBuild_citation_bmuripubmed_id0pubmed_bmuri00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
pubmed_id
0
text/plain
0
pubmed_bmuri
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBuild_related_bmuripubmed_id0pubmed_bmuri00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
pubmed_id
0
text/plain
0
pubmed_bmuri
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_Listinputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
[B
true
inputlist
2
l(l(''))
1
outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFlatten_List2inputlist2outputlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
[B
true
inputlist
2
l(l(''))
1
outputlist
1
l('')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
0
concatenated
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBuild_related_ntriplespubmed_id_source0pubmed_id_reference0ntriples00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
pubmed_id_reference
0
text/plain
java.lang.String
true
pubmed_id_source
0
text/plain
0
ntriples
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_String2stringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
0
concatenated
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_bmuribmuri0id00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
bmuri
0
text/plain
0
id
0
text/plain
0
namespace
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeTop_bmuristringlist1item_number0utility_stringlist_select_first_list11net.sf.taverna.t2.activitiesdataflow-activity0.8net.sf.taverna.t2.activities.dataflow.DataflowActivitynet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBuild_NCBI_ELink_urlpubmed_idGet_Web_Page_from_URLurlXPath_From_Textxml-textXPath_From_TextxpathFilter_List_of_Strings_by_regexstringlistFilter_List_of_Strings_by_regexregexXPath_From_Text2xml-textXPath_From_Text2xpathBuild_citation_ntriplespubmed_id_referenceBuild_citation_ntriplespubmed_id_sourceFilter_List_of_Strings_by_regex2stringlistFilter_List_of_Strings_by_regex2regexXPath_From_Text3xml-textXPath_From_Text3xpathBuild_citation_bmuripubmed_idBuild_related_bmuripubmed_idFlatten_ListinputlistFlatten_List2inputlistMerge_String_List_to_a_StringstringlistBuild_related_ntriplespubmed_id_sourceBuild_related_ntriplespubmed_id_referenceMerge_String_List_to_a_String2stringlistSplit_bmuribmuriTop_bmuristringlistTop_bmuriitem_numbero1o2citation_bmuri_listncbi_pubmed2pubmed_citation_ntriples_stringrelated_bmuri_listrelated_ntriples_string
FrancoisBelleau@yahoo.ca
2009-11-16 12:37:35.404 EST
ncbi_pubmed2pubmed
2009-11-17 00:12:48.842 EST
ncbi_pubmed2pubmed_ntriples
2009-11-16 13:14:47.361 EST
Use NCBI ELink service to get the citations list and related article list from Pubmed for a specific pubmed ID.
Returms bmuri list or ntriples for both result set.
2009-11-16 13:16:22.222 EST
Workflow5stringlist11item_number00
10
2009-11-16 14:13:23.402 EST
utility_stringlist_select_first_listSelect_first_n_stringitem_number0stringlist1outputlist11net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
stringlist
1
text/plain
java.lang.String
true
item_number
0
text/plain
1
outputlist
1
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSelect_first_n_stringitem_numberSelect_first_n_stringstringlistutility_stringlist_select_first_list
utility_select_first
2009-11-16 14:07:53.25 EST
FrancoisBelleau@yahoo.ca
2009-11-16 14:14:34.320 EST
utility_stringlist_select_first
2009-11-16 14:08:31.750 EST
Returns the first n items of a stringlist.
2009-11-16 14:15:05.878 EST
dataflow0ntriples00
<http://test> <http://test> <http://test> .
2009-11-09 19:01:39.958 EST
graph00
http://test
2009-11-09 18:55:38.421 EST
sparql_endpoint_url00
http://localhost:8890/sparql
2009-11-09 19:01:22.419 EST
sparql_insert_ntriples_logo1o2SPARQL_insert_ntriplesntriples0graph0sparql_port0sparql_host0html00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
ntriples
0
text/plain
java.lang.String
true
graph
0
text/plain
java.lang.String
true
sparql_host
0
text/plain
java.lang.String
true
sparql_port
0
text/plain
0
html
0
'text/plain,text/html'
UserNameHere
2009-01-23 00:53:10.565 EST
UserNameHere
2009-01-23 00:06:17.667 EST
UserNameHere
2009-01-23 00:06:51.677 EST
UserNameHere
2009-01-22 23:12:14.802 EST
UserNameHere
2009-11-02 14:01:31.829 EST
UserNameHere
2009-10-06 00:34:47.715 EDT
UserNameHere
2009-01-23 00:03:55.477 EST
UserNameHere
2009-01-23 00:07:17.366 EST
UserNameHere
2009-01-23 00:44:07.662 EST
UserNameHere
2009-10-06 00:28:07.839 EDT
UserNameHere
2009-01-23 00:03:19.809 EST
UserNameHere
2009-11-02 14:07:23.431 EST
UserNameHere
2009-01-23 00:05:21.845 EST
UserNameHere
2009-10-06 00:36:49.673 EDT
UserNameHere
2009-01-26 23:10:57.600 EST
UserNameHere
2009-01-23 00:08:37.503 EST
UserNameHere
2009-01-22 22:42:57.377 EST
UserNameHere
2009-10-06 00:23:08.363 EDT
UserNameHere
2009-01-25 22:32:29.783 EST
UserNameHere
2009-10-20 01:19:54.646 EDT
UserNameHere
2009-01-26 23:11:58.183 EST
UserNameHere
2009-01-25 22:33:59.715 EST
UserNameHere
2009-01-25 22:27:57.661 EST
UserNameHere
2009-01-23 00:09:42.877 EST
UserNameHere
2009-01-26 23:08:43.41 EST
UserNameHere
2009-01-25 22:17:04.902 EST
UserNameHere
2009-01-22 22:44:53.200 EST
UserNameHere
2009-11-02 14:11:03.534 EST
UserNameHere
2009-01-25 22:31:23.275 EST
UserNameHere
2009-01-23 00:08:17.891 EST
UserNameHere
2009-01-22 22:58:39.533 EST
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1regex0group0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
1
filteredlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehtml_donevalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
>, (.*?) -- done
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcat_log_messagemsg0graph0sparql_url0subject0log00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
msg
0
text/plain
java.lang.String
true
graph
0
text/plain
java.lang.String
true
sparql_url
0
text/plain
java.lang.String
true
subject
0
text/plain
0
log
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_sparql_urlsparql_url0port00host00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
sparql_url
0
text/plain
0
host
0
text/plain
0
port
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFirst_subjectntriples0subject00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
ntriples
0
text/plain
0
subject
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSPARQL_insert_ntriplesntriplesSPARQL_insert_ntriplesgraphSPARQL_insert_ntriplessparql_portSPARQL_insert_ntriplessparql_hostFilter_list_of_strings_extracting_match_to_a_regexstringlistFilter_list_of_strings_extracting_match_to_a_regexregexFilter_list_of_strings_extracting_match_to_a_regexgroupConcat_log_messagemsgConcat_log_messagegraphConcat_log_messagesparql_urlConcat_log_messagesubjectSplit_sparql_urlsparql_urlFirst_subjectntriplessparql_insert_ntriples_logo1o2
test values:
graph=http://labrie
sparql_host = localhost
sparql_port = 8890
2009-11-02 14:14:41.522 EST
FrancoisBelleau@yahoo.ca
2009-10-20 01:20:39.936 EDT
test values:
graph=http://hexokinase
2009-10-20 01:21:14.365 EDT
test values:
graph=http://hexokinase
sparql_host = localhost
sparql_port = 8890
2009-11-02 14:03:31.963 EST
sparql_insert_ntriples
2009-11-09 19:11:40.925 EST
sparql_insert_ntriples.t2flow
2009-11-02 14:00:03.250 EST
Load RDF triples in NTRIPLES format using a SPARQL insert query.
test values:
graph=http://labrie
sparql_endpoint_url = http://localhost:8890/sparql
2009-11-09 19:12:50.238 EST
dataflow0ntriples00
<http://test> <http://test> <http://test> .
2009-11-09 19:01:39.958 EST
graph00
http://test
2009-11-09 18:55:38.421 EST
sparql_endpoint_url00
http://localhost:8890/sparql
2009-11-09 19:01:22.419 EST
sparql_insert_ntriples_logo1o2SPARQL_insert_ntriplesntriples0graph0sparql_port0sparql_host0html00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
ntriples
0
text/plain
java.lang.String
true
graph
0
text/plain
java.lang.String
true
sparql_host
0
text/plain
java.lang.String
true
sparql_port
0
text/plain
0
html
0
'text/plain,text/html'
UserNameHere
2009-01-26 23:08:43.41 EST
UserNameHere
2009-01-23 00:08:37.503 EST
UserNameHere
2009-10-06 00:36:49.673 EDT
UserNameHere
2009-01-25 22:27:57.661 EST
UserNameHere
2009-01-23 00:03:55.477 EST
UserNameHere
2009-01-22 22:42:57.377 EST
UserNameHere
2009-01-22 23:12:14.802 EST
UserNameHere
2009-10-06 00:28:07.839 EDT
UserNameHere
2009-10-20 01:19:54.646 EDT
UserNameHere
2009-10-06 00:23:08.363 EDT
UserNameHere
2009-01-23 00:08:17.891 EST
UserNameHere
2009-01-23 00:05:21.845 EST
UserNameHere
2009-01-26 23:11:58.183 EST
UserNameHere
2009-01-22 22:44:53.200 EST
UserNameHere
2009-11-02 14:07:23.431 EST
UserNameHere
2009-01-25 22:32:29.783 EST
UserNameHere
2009-01-22 22:58:39.533 EST
UserNameHere
2009-11-02 14:01:31.829 EST
UserNameHere
2009-01-25 22:31:23.275 EST
UserNameHere
2009-01-23 00:07:17.366 EST
UserNameHere
2009-11-02 14:11:03.534 EST
UserNameHere
2009-01-23 00:06:17.667 EST
UserNameHere
2009-01-23 00:03:19.809 EST
UserNameHere
2009-01-26 23:10:57.600 EST
UserNameHere
2009-01-23 00:06:51.677 EST
UserNameHere
2009-01-25 22:33:59.715 EST
UserNameHere
2009-01-25 22:17:04.902 EST
UserNameHere
2009-01-23 00:44:07.662 EST
UserNameHere
2009-01-23 00:53:10.565 EST
UserNameHere
2009-10-06 00:34:47.715 EDT
UserNameHere
2009-01-23 00:09:42.877 EST
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1regex0group0filteredlist11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
1
filteredlist
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehtml_donevalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
>, (.*?) -- done
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeConcat_log_messagemsg0graph0sparql_url0subject0log00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
msg
0
text/plain
java.lang.String
true
graph
0
text/plain
java.lang.String
true
sparql_url
0
text/plain
java.lang.String
true
subject
0
text/plain
0
log
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_sparql_urlsparql_url0port00host00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
sparql_url
0
text/plain
0
host
0
text/plain
0
port
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFirst_subjectntriples0subject00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
ntriples
0
text/plain
0
subject
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSPARQL_insert_ntriplesntriplesSPARQL_insert_ntriplesgraphSPARQL_insert_ntriplessparql_portSPARQL_insert_ntriplessparql_hostFilter_list_of_strings_extracting_match_to_a_regexstringlistFilter_list_of_strings_extracting_match_to_a_regexregexFilter_list_of_strings_extracting_match_to_a_regexgroupConcat_log_messagemsgConcat_log_messagegraphConcat_log_messagesparql_urlConcat_log_messagesubjectSplit_sparql_urlsparql_urlFirst_subjectntriplessparql_insert_ntriples_logo1o2
test values:
graph=http://hexokinase
2009-10-20 01:21:14.365 EDT
test values:
graph=http://hexokinase
sparql_host = localhost
sparql_port = 8890
2009-11-02 14:03:31.963 EST
FrancoisBelleau@yahoo.ca
2009-10-20 01:20:39.936 EDT
sparql_insert_ntriples_1
2009-11-16 23:53:34.858 EST
Load RDF triples in NTRIPLES format using a SPARQL insert query.
test values:
graph=http://labrie
sparql_endpoint_url = http://localhost:8890/sparql
2009-11-09 19:12:50.238 EST
sparql_insert_ntriples.t2flow
2009-11-02 14:00:03.250 EST
test values:
graph=http://labrie
sparql_host = localhost
sparql_port = 8890
2009-11-02 14:14:41.522 EST
sparql_insert_ntriples
2009-11-09 19:11:40.925 EST
Workflow2sparql_query00
SELECT DISTINCT ?seeAlso
WHERE {
?s a <http://bio2rdf.org/ns/bio2rdf#SearchResult> .
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso .
}
2009-11-17 00:34:34.699 EST
2009-11-17 00:28:48.97 EST
SELECT ?xRelation
WHERE {
?Pathway a <http://bio2rdf.org/ns/kegg#Pathway> .
FILTER (?Pathway = <http://bio2rdf.org/path:mmu00010>) .
?Pathway <http://bio2rdf.org/ns/kegg#xRelation> ?xRelation .
}
2009-11-10 21:39:13.791 EST
The URL of a SPARQL query to be submited.
SELECT DISTINCT ?xPubMed
WHERE {
?Gene a <http://bio2rdf.org/ns/geneid#Gene> .
?Gene <http://bio2rdf.org/ns/bio2rdf#xPubMed> ?xPubMed .
}
ORDER BY DESC(count(*))
2009-11-09 11:37:58.68 EST
SELECT DISTINCT ?xPubMed
WHERE {
?Gene a <http://bio2rdf.org/ns/geneid#Gene> .
?Gene <http://bio2rdf.org/ns/bio2rdf#xPubMed> ?xPubMed .
}
ORDER BY DESC(count(*))
2009-11-09 11:29:33.239 EST
http://localhost:8890/sparql?default-graph-uri=&should-sponge=&query=SELECT+DISTINCT+%3FxPubMed%0D%0AWHERE+{%0D%0A++%3FGene+a+%3Chttp%3A%2F%2Fbio2rdf.org%2Fns%2Fgeneid%23Gene%3E+.+%0D%0A++%3FGene+%3Chttp%3A%2F%2Fbio2rdf.org%2Fns%2Fbio2rdf%23xPubMed%3E+%3FxPubMed+.%0D%0A}%0D%0AORDER+BY+DESC(count(*))&format=text%2Fhtml&debug=on&timeout=
2009-11-09 11:29:24.214 EST
SELECT DISTINCT ?seeAlso
WHERE {
?s <http://www.w3.org/2000/01/rdf-schema#seeAlso> ?seeAlso . }
2009-11-17 00:33:30.917 EST
sparql_endpoint00
http://localhost:8890/sparql
2009-11-10 21:39:50.908 EST
graph00
http://temp
2009-11-17 00:28:32.601 EST
http://kegg2go
2009-11-10 21:39:38.331 EST
o1sparql_query_bmuri_listbmuris_countbmuris_stringo2Get_Web_Page_from_URLurl0contents00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
url
0
'text/x-taverna-web-url'
java.lang.String
true
base
0
'text/x-taverna-web-url'
0
contents
0
'text/plain,text/html'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeSplit_string_into_string_list_by_regular_expressionstring0regex0split11net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
string
0
'text/plain'
java.lang.String
true
regex
0
'text/plain'
1
split
1
l('text/plain')
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeFilter_list_of_strings_extracting_match_to_a_regexstringlist1group0regex0filteredlist11count00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
regex
0
'text/plain'
java.lang.String
true
group
0
'text/plain'
1
filteredlist
1
l('text/plain')
0
count
0
text/plain
UserNameHere
2009-11-07 23:37:08.293 EST
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokeeolvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
\n
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invoke_1value00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Invokehtml_tdvalue00net.sf.taverna.t2.activitiesstringconstant-activity0.8net.sf.taverna.t2.activities.stringconstant.StringConstantActivity
<td>(.*)</td>
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeMerge_String_List_to_a_Stringstringlist1concatenated00net.sf.taverna.t2.activitieslocalworker-activity0.8net.sf.taverna.t2.activities.localworker.LocalworkerActivity
workflow
java.lang.String
true
stringlist
1
l('text/plain')
java.lang.String
true
seperator
0
'text/plain'
0
concatenated
0
'text/plain'
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeBuild_sparql_urlsparql_query0sparql_endpoint0graph0sparql_query_url00net.sf.taverna.t2.activitiesbeanshell-activity0.8net.sf.taverna.t2.activities.beanshell.BeanshellActivity
workflow
java.lang.String
true
sparql_query
0
text/plain
java.lang.String
true
sparql_endpoint
0
text/plain
java.lang.String
true
graph
0
text/plain
0
sparql_query_url
0
text/plain
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Parallelize
1
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.ErrorBouncenet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Failovernet.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.Retry
1.0
1000
5000
0
net.sf.taverna.t2.coreworkflowmodel-impl0.8net.sf.taverna.t2.workflowmodel.processor.dispatch.layers.InvokeGet_Web_Page_from_URLurlSplit_string_into_string_list_by_regular_expressionstringSplit_string_into_string_list_by_regular_expressionregexFilter_list_of_strings_extracting_match_to_a_regexstringlistFilter_list_of_strings_extracting_match_to_a_regexgroupFilter_list_of_strings_extracting_match_to_a_regexregexMerge_String_List_to_a_StringstringlistBuild_sparql_urlsparql_queryBuild_sparql_urlsparql_endpointBuild_sparql_urlgrapho1sparql_query_bmuri_listbmuris_countbmuris_stringo2
sparql_query_bmuris
2009-11-09 11:33:22.596 EST
FrancoisBelleau@yahoo.ca
2009-11-09 11:32:51.395 EST
sparql_query_bmuri_list
2009-11-09 11:37:16.669 EST
Execute a Virtuoso SPARQL query specified by the URL and return the bmuris result list.
The SPARQL query query must return only one variable, of type URI, in the SELECT statement.
2009-11-09 11:35:57.963 EST