Subscribe to Latest Workflows feed All Workflows

Taverna 2

Original Uploader

Workflow Convert to KEGG ID (v1)

Created: 17/03/10 @ 17:43:24 | Last updated: 17/03/10 @ 17:44:59

Credits: User White duncan100

License: Creative Commons Attribution-Share Alike 3.0 Unported License

_untitled_
Convert another database ID to a KEGG ID. Valid namespaces are NCBI_gi, GebBank, UniProt, UniGene, PMID or OMIM.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 3 times | Downloaded: 0 times

This Workflow has no tags!

Show View Download Download (v1)

Taverna 2

Original Uploader

Workflow microRNA to KEGG Pathways and Abstracts (v1)

Created: 17/03/10 @ 10:53:06 | Last updated: 17/03/10 @ 10:53:11

Credits: User Paul Fisher

Attributions: Workflow Pathways and Gene annotations for QTL region

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Microrna_to_kegg_pathways_and_abstracts
Workflow takes in a text file of microRNAs from microCOSM (at the EBI) and outputs a list of KEGG pathway information, including genes in pathways and pathway abstracts from PubMed. The results can then be used in various text mining applications/workflows to rank the results against a given disease.Workflow takes in a file of microRNAs

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 5 times | Downloaded: 0 times

Tags (21):

Show View

Taverna 2

Original Uploader

Workflow Split multi-sequence FASTA file into list (v1)

Created: 16/03/10 @ 17:46:06

License: Creative Commons Attribution 3.0 Unported License

Preview
Splits a flat file containing multiple fasta sequences into a list of fasta sequences.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 14 times | Downloaded: 11 times

This Workflow has no tags!

Show View Download Download (v1)

Taverna 2

Original Uploader

Workflow [untitled] (v1)

Created: 16/03/10 @ 16:33:37 | Last updated: 16/03/10 @ 16:33:38

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

_untitled_
No description

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 9 times | Downloaded: 1 time

Tags (6):

Show View Download Download (v1)

Taverna 2

Original Uploader

Workflow find events in xray and radio (v7)

Created: 06/11/09 @ 15:18:53 | Last updated: 16/03/10 @ 15:19:31

Credits: User Anja Le Blanc

License: Creative Commons Attribution-Share Alike 3.0 Unported License

_untitled_
instruments: hessiEC, phoenix2 attention: hessi name has changed!

Rating: 0.0 / 5 (0 ratings) | Versions: 7 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 50 times | Downloaded: 23 times

Tags (3):

Show View Download Download (v7)

SPARQL

Original Uploader

Workflow SPARQL query for QSAR data (v1)

Created: 16/03/10 @ 11:26:40 | Last updated: 16/03/10 @ 11:26:42

Credits: User Annsofie Anderssson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This query collects valuable data such as activity-, assay-, target-id's, confidence values, SMILES, activity values and units for QSAR projects.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 1 time | Downloaded: 2 times

Tags (4):

Show View Download Download (v1)

SPARQL

Original Uploader

Workflow Query chEMBL for ion channel PCM data (v1)

Created: 16/03/10 @ 09:25:26 | Last updated: 16/03/10 @ 09:25:28

Credits: User Annsofie Anderssson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 3 times | Downloaded: 0 times

Tags (4):

Show View Download Download (v1)

Taverna 2

Original Uploader

Workflow Cross-references search, duplicated genes search, cross-reference fetch (v1)

Created: 16/03/10 @ 08:13:50 | Last updated: 16/03/10 @ 08:18:08

Credits: User abretaud

License: Creative Commons Attribution-Share Alike 3.0 Unported License

_untitled_
This workflow is composed of 3 steps: -First, it search for Ensembl gene Ids matching a list of identifier, using the GenOuest Xref webservice. -Then it uses the Duplicated Genes Database webservice to search for duplication information about each found gene. -Finally, it uses the GenOuest Xref webservice to fetch external identifier for each found gene (GO term in this example).

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 5 times | Downloaded: 0 times

Tags (3):

Show View Download Download (v1)

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3