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This workflow takes in probesets from and AffyMetrix micorarray experiment and returns: the genes ; gene start and end positions; chromosome where genes reside; ensembl trasncripts; SwissProt ids; affy probeset identifiers for chips Mouse430_2 and Mouse430a_2.
Example ids from the Mouse430_2 affymetrix array are as follows (newline separated):
1447227_at
1440624_at
1436240_at
1454904_at
1435665_at
1418148_at
1429831_at
Created: 2007-10-03 | Last updated: 2009-12-03
Tab Parser (1)
This workflow takes in a tab separated file, and then parses specific rows and columns from the file into an Ondex Graph. Additional prarameters are provided, though these are optional:
graphId Long the ID of the Graph (REQUIRED)
input String the plugin input (REQUIRED)
skip Integer How many rows to skip at begin of document (Optional). Default value is 22.
fromCol Integer Index of concept parser id for from concept. Default value is 0. (REQUIRED)
toCol Integer Index of concept par...
Created: 2009-08-19
Credits: Paul Fisher
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