myExperiment - Workflows

Results per page:

Sort by:

Showing 4 results. Use the filters on the left and the search box below to refine the results.

Tag: taxonomy

Remove all filters

Taverna 2

Uploader

Cherian Mathew

Project

Data Refinement Workflow v17 (17)

Download

The aim of the (Taxonomic) Data Refinement Workflow is to provide a streamlined workflow environment for preparing observational and specimen data sets for use in scientific analysis on the Taverna platform. The workflow has been designed in a way that, • accepts input data in a recognized format, but originating from various sources (e.g. services, local user data sets), • includes a number of graphical user interfaces to view and interact with the data, • the output of each part of the work...

Created: 2012-04-11 | Last updated: 2014-12-17

Credits: Cherian Mathew

Taverna 1

Uploader

Paul Fisher

Tab Parser (1)

This workflow takes in a tab separated file, and then parses specific rows and columns from the file into an Ondex Graph. Additional prarameters are provided, though these are optional: graphId Long the ID of the Graph (REQUIRED) input String the plugin input (REQUIRED) skip Integer How many rows to skip at begin of document (Optional). Default value is 22. fromCol Integer Index of concept parser id for from concept. Default value is 0. (REQUIRED) toCol Integer Index of concept par...

Created: 2009-08-19

Credits: Paul Fisher

Galaxy

Uploader

Peter Cock

Species of top BLAST hits (1)

Download

Galaxy workflow for counting species of top BLAST hits.This is an example workflow using the Galaxy wrappers for NCBI BLAST+, see https://github.com/peterjc/galaxy_blast and http://dx.doi.org/10.1101/014043This Galaxy workflow (file blast_top_hit_species.ga) is intended for an initial assessment of a transcriptome assembly to give a crude indication of any major contamination present based on the species of the top BLAST hit of 1000 representative sequences.Development of this workflow is und...

Created: 2015-04-08 | Last updated: 2015-04-08

Credits: Peter Cock

Taverna 2

Uploader

Francois Belleau

Bio2RDF: CPath search in taxon (1)

Download

No description

Created: 2009-02-19

Credits: Francois Belleau

Results per page:

Sort by: