Workflows

Merge string list to string - colon separator (1)

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The merge string list to string service takes the list ['a','b','c'] and using the separator ':' outputs the string 'a:b:c'.

Created: 2008-09-27

Credits: Alan Williams

Get image URLs from HTML document and outp... (1)

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Retrieve the web page at http://www.mygrid.org.uk, examine it for images and output the images.

Created: 2008-09-27

Credits: Alan Williams

Get image from URL - only url specified (1)

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Retrieve the image at http://www.mygrid.org.uk/files/2008/09/dragon-workflow.png using just the url parameter

Created: 2008-09-27

Credits: Alan Williams

Fail if true - true value (1)

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The fail if true service throws an exception when passed the value true.

Created: 2008-09-27

Credits: Alan Williams

Decode base64 to byte[] (1)

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The decode base64 to byte[] service decodes the base64 string. The byte array is then converted into the string 'Hello world'.

Created: 2008-09-27

Credits: Alan Williams

echo (1)

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The workflow tests the standard-compliance of web service descriptions of ARC-1, a development of the EU project "KnowARC" to modernise the grid infrastructure ARC of the NorduGrid. Learn more about it on http://www.knowarc.eu and http://www.nordugrid.org. If you have computers in spare - join us - and help you very own and many other sciences. And you make many interesting contacts just en passent. No authorisation is required for this very experimental service.

Created: 2008-09-18

Credits: Steffen Möller

file_fetching_workflow (1)

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This workflow demonstrates interaction with an instance of an omixed server (omixed.org) hosting a very simple model and containing some sequence files.  The server is available for public access so you should be able to try this out. Notes: With the versions of Taverna and Axis2 I am using, I had to massage the WSDL emitted by Axis2 in order to keep Taverna happy.  This involved removing the sections relating to SOAP12. The workflow first connects to the server and obtains a ses...

Created: 2008-07-14 | Last updated: 2008-07-14

Credits: Tim Booth

casimir_htgt (1)

An update to the original casimir workflow. This now utilises the high throughput gene trapping biomart server that has just gone live at the Sanger which allows filtering on which genes have been selected for the various gene KO projects and which stage in the mouse KO strain production each gene has reached

Created: 2008-01-24 | Last updated: 2008-01-24

Credits: Damian

VLAM (1)

This is an experimental workflow for testing interoperability with WS VLAM workflow engine. Bean Shell Script processor is used to invoke existing WS-VLAM Topology(Workflow) which obtains parameters from previous processors in taverna.

Created: 2008-01-23 | Last updated: 2008-01-23

Credits: Wibisono

Fetch Dragon images from BioMoby v2 (1)

Use the local java plugins and some filtering operations to fetch the comic strip image from http://www.dilbert.com

Created: 2007-11-29 | Last updated: 2007-11-29

Credits: Mariebrown