Workflows

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Showing 8 results. Use the filters on the left and the search box below to refine the results.
Type: Bioinformatics

Workflow Integrated workflow for MSA, Similarity sc... (3)

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Integrated workflow for MSA, Similarity score estimation, and gaps trimming using Clustal Omega and web services at http://bioservices.sci.psu.ac.th/ We demonstrate the workflow using example fasta seqs.

Created: 2016-02-28 | Last updated: 2017-08-16

Credits: User Kasikrit Damkliang

Workflow The automatic integrated workflow for Phyl... (2)

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update server address

Created: 2016-11-08 | Last updated: 2016-11-24

Credits: User Kasikrit Damkliang

Workflow Analysis of TE family sequencing read quan... (1)

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This workflow is used to quantify the sequencing reads mapped to the transposable element families within Drosophila Transposon Sequences Canonical set v9.411 (Ashburner et al., 2016). For each sample, the reads of the sequencing data are clipped of their adapters and trimmed to 35bp using the Trimmomatic tool (Lohse et al., 2012). The reads are then aligned to the Drosophila Transposon Sequences Canonical set v9.411 (Ashburner et al., 2016) with Bowtie2 (Langmead & Salzberg, 2012). ...

Created: 2016-09-10 | Last updated: 2016-09-11

Credits: User Portia Hollyoak

Workflow An example BRAIN api call (1)

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An example brain API call.Note: This workflow require RServe library. Please refer to this link for the instructions to install RServer    

Created: 2016-07-11 | Last updated: 2016-07-11

Credits: User Rajireturn

Workflow MSA Gaps Trimming Workflow (1)

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The workflow for prefix and suffix gaps trimming of MSA result in the Phylip format.Input: MSA result in the Phylip format.Output: Trimmed prefix and suffix of the MSA result.

Created: 2016-02-28

Credits: User Kasikrit Damkliang

Workflow MSA Similarity Score Estimation (1)

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The workflow for MSA Similarity Score Estimation 

Created: 2016-02-28

Credits: User Kasikrit Damkliang

Workflow Get all PSICQUIC (1)

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Workflow to retrive all PSICQUIC services 

Created: 2015-11-04 | Last updated: 2015-11-04

Credits: User Maximilian Koch

Workflow SNP identification and evaluation for Diab... (1)

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This workflow gathers SNP information for a gene set of Diabetes Type II phenotype using BioMart queries. Furthermore, GO Terms and functional annotation clustering are defined for this gene set using FunctionalClusterDavid workflow. 

Created: 2015-06-23

Credits: User Nikolaos Bismpikos User Katy Wolstencroft

Attributions: Workflow FunctionalClusterDavid

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