Workflows

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Showing 81 results. Use the filters on the left and the search box below to refine the results.
Type: Galaxy
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Workflow BioMaS Illumina Workflow (1)

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BioMaS (Bioinformatic analysis of Metagenomic AmpliconS) is a bioinformatic pipeline designed to support biomolecular researchers involved in taxonomic studies of environmental microbial communities by a completely automated workflow, comprehensive of all the fundamental steps, from raw sequence data arrangement to final taxonomic identification, that are absolutely required in a typical Meta-barcoding HTS-based experiment. This BioMaS version allows the analysis of both bacterial a...

Created: 2014-11-27 | Last updated: 2014-11-27

Credits: User Pasquale Notarangelo

Workflow Compute and correct GC bias in NGS data (1)

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Galaxy workflow based on deepTools which will compute and correct GC bias in your NGS data. For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03

Credits: User Björn Grüning

Workflow Remove "chr" from the beginning of genomic... (1)

This Galaxy workflow will remove the 'chr' string from the beginning of every line in genomic interval files.

Created: 2014-04-03

Credits: User Björn Grüning

Workflow Add "chr" to the first column of a 6 colum... (1)

That workflow is changing the chromosome naming in your BED file. It will add the string 'chr' at the beginning of every line.

Created: 2014-04-03

Credits: User Björn Grüning

Workflow Heatmap of read coverages (single BAM file) (1)

Galaxy workflow based on deepTools which creates a clustered heatmap of the read coverage. One BAM file will be used as input and a heatmap will be the output.For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03

Credits: User Björn Grüning

Workflow Heatmap of read coverages (1)

Galaxy workflow based on deepTools which creates a clustered heatmap of the read coverage. Two BAM files will be used as input and a heatmap will be the output.For more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03

Credits: User Björn Grüning

Workflow Clustered heatmap of signals around the TSSs (1)

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Galaxy workflow based on deepTools which creates a clustered heatmap of signals around the TSS. One bigwig file is needed as input with the signal and an annotation file with your TSS regions. The output will be a heatmap. You can create such a bigwig file with the bamCorrelate toolFor more information please see the deepTools wiki. This workflow is also available via the Galaxy Tool Shed.

Created: 2014-04-03 | Last updated: 2014-04-03

Credits: User Björn Grüning

Uploader

Workflow MergePeptides (1)

A example Galaxy pipeline for removing redundancy in peptides within quantitative proteomics analysis.

Created: 2014-03-31 | Last updated: 2014-03-31

Credits: User hindlem

Uploader

Workflow NGS : Tuto SNP detection workflow single end (1)

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Generate pileup, Unify Genotypers and create a VCF file from FastQ files of two individuals

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: User Ylebras

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Workflow NGS RAD : Population Genomics on RAD data ... (1)

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Analyse clean population fastQ files (coming from Stacks : Process Radtag tool for example) without a reference genome and population information

Created: 2014-03-05

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