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Showing 81 results. Use the filters on the left and the search box below to refine the results.
Type: Galaxy
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Workflow NGS RAD : Population Genomics on RAD data ... (1)

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Analyse clean population SAM files (coming from alignment of FastQ from Stacks : Process Radtag tool for example) with a reference genome and population information

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: User Ylebras

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Workflow NGS : Group and filter mapped reads (1)

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Filter and group reads from a mapping Bam file

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: User Ylebras

Uploader

Workflow Tuto Galaxy 2013 : GenOuest, from Fasta to... (1)

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Create a tree from a multifastafile using ClustalW, PhylipDNAdist, PhylipNeighbor, PhylipDrawtree and Treevector, for interactive visualization in Phyloviz or static on pdf or svg format. Then, using the same multifasta file, handling sequences file, use blast on a reference genome and filter results to have sequences with more than 90% identity.

Created: 2014-03-05 | Last updated: 2014-06-10

Credits: User Ylebras

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Workflow NGS : Tuto SNP detection workflow single end (1)

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Generate pileup, Unify Genotypers and create a VCF file from FastQ files of two individuals

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: User Ylebras

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Workflow Transcritomics : eQTL after data extractio... (1)

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Format raw files from Feature extraction output (Agilent array matrix file) to have individual in columns and genes in rows

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: User Ylebras

Uploader

Workflow NGS : RNAseq workflow part 1 from Tophat t... (1)

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Remove duplicates from Tophat BAM output files and filter

Created: 2014-03-04 | Last updated: 2014-06-10

Credits: User Ylebras

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Workflow NGS : Mini assembly from FastQ files using... (1)

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Assemble FastQ reads with minia

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Uploader

Workflow NGS : Filter contamination in raw reads by ID (1)

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Filter FastQ sequences by ID

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Uploader

Workflow NGS : Bowtie2 using built-in genome to dep... (1)

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Reads mapping using a built-in genome from your history, then generate pileup, base coverage, depth of coverage and summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

Uploader

Workflow NGS : Bowtie2 with a genome in fasta forma... (1)

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Reads mapping using a reference genome in fasta format from your history, then generate pileup, base coverage, depth of coverage and summary statistics

Created: 2014-02-28 | Last updated: 2014-06-10

Credits: User Ylebras

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